Pregenerated sensors for SNHG11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044349Ensembl transcript IDs: ENSMUST00000109488.8
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAATGAAGCAATGTGACCAAGACAATGAAAGCCCTGAACAATCCTaGCTGGTCATCCTCCAGGTGGCTTCTGCGGAGCGCCAGCAGCGG | + |
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Preference number: 1 (lower is better) Translates to: TMKQCDQDNESPEQS*LVILQVASAERQQR Trigger: CCGCTGCTGGCGCTCCGCAGAAGCCACCTGGAGGATGACCAGCCAGGATTGTTCAGGGCTTTCATTGTCTTGGTCACATTGCTTCATTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR GCA 90 bp | CTGGAGCCCCCAGGACCCTATGCCATGCTTGGGGCTGTATTCTCCTaGTGTCTAATTAGGGAGAGGCATAATACATGCCTGCAGTGTACA | + |
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Preference number: 1 (lower is better) Translates to: LEPPGPYAMLGAVFS*CLIRERHNTCLQCT Trigger: TGTACACTGCAGGCATGTATTATGCCTCTCCCTAATTAGACAGCAGGAGAATACAGCCCCAAGCATGGCATAGGGTCCTGGGGGCTCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 90 bp | GAGTCCATTACAGCGGTAAGGCATGAGAGCACACAGCAGGCATGGTaGCAGGGGCATGAAACTGAGCAATCACACCTTGAAGGTCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: ESITAVRHESTQQAW*QGHETEQSHLEGQA Trigger: AGCTTGACCTTCAAGGTGTGATTGCTCAGTTTCATGCCCCTGCCACCATGCCTGCTGTGTGCTCTCATGCCTTACCGCTGTAATGGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 90 bp | CTCTTGATGGGTTTGTCGTCTAGCTTCAACCCCTTGCTTGTCTGGTaGTCTCTGGGATGCAGTCCTTGTCTGAAATGTCACAGCAGGAGC | + |
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Preference number: 1 (lower is better) Translates to: LLMGLSSSFNPLLVW*SLGCSPCLKCHSRS Trigger: GCTCCTGCTGTGACATTTCAGACAAGGACTGCATCCCAGAGACCACCAGACAAGCAAGGGGTTGAAGCTAGACGACAAACCCATCAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR TCA 90 bp | ACAACCTGCGTGTTTAACACGGCTGGTTTCCCGAGTGCTTATTTGTaGGAGCAAGAACCTCAGTGCCACGTGGCATTCTGTGGCTCTAAA | + |
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Preference number: 1 (lower is better) Translates to: TTCVFNTAGFPSAYL*EQEPQCHVAFCGSK Trigger: TTTAGAGCCACAGAATGCCACGTGGCACTGAGGTTCTTGCTCTCACAAATAAGCACTCGGGAAACCAGCCGTGTTAAACACGCAGGTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 90 bp | TTCCCACTTACCTGTTACCTCCTGGGTGAGAGCACGCACTGCTCCTaGGTGACTAGAGAAAAATTCTCTTACCTACTCCAAGACTGGAGA | + |
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Preference number: 1 (lower is better) Translates to: FPLTCYLLGESTHCS*VTREKFSYLLQDWR Trigger: TCTCCAGTCTTGGAGTAGGTAAGAGAATTTTTCTCTAGTCACCCAGGAGCAGTGCGTGCTCTCACCCAGGAGGTAACAGGTAAGTGGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR GCA 90 bp | AAGGGACTGAATCTGACTGACACTTGTGCAGAGCTGCAGCTCTGTTaGTCTAACTATTTCCCTCCTCTGGATCTTAACCAACAGCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: KGLNLTDTCAELQLC*SNYFPPLDLNQQLS Trigger: ACTGAGCTGTTGGTTAAGATCCAGAGGAGGGAAATAGTTAGAGCAACAGAGCTGCAGCTCTGCACAAGTGTCAGTCAGATTCAGTCCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR TCA 90 bp | TGTTATACTGTGTCCTATTACAGGTGCACCCTTTATCCCTCCTTTTaGCAAAAGGCATTTGGATTCTGCACCGACAGGCTGAGAATCAAC | + |
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Preference number: 1 (lower is better) Translates to: CYTVSYYRCTLYPSF*QKAFGFCTDRLRIN Trigger: GTTGATTCTCAGCCTGTCGGTGCAGAATCCAAATGCCTTTTGTCAAAAGGAGGGATAAAGGGTGCACCTGTAATAGGACACAGTATAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR TCA 90 bp | AAAGAAATGTGTAAAGAGCTATCTGACAAAGTCAAGTTGAAGATATaGCAGAATGGTGTTTTCCTGGAGCCCCCAGGACCCTATGCCATG | + |
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Preference number: 1 (lower is better) Translates to: KEMCKELSDKVKLKI*QNGVFLEPPGPYAM Trigger: CATGGCATAGGGTCCTGGGGGCTCCAGGAAAACACCATTCTGTCATATCTTCAACTTGACTTTGTCAGATAGCTCTTTACACATTTCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 90 bp | GAGAATCAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTaGGGTCAGCAGTATCAGGTCCTTCTTGCTTCCCCAAAGTCTTGG | + |
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Preference number: 1 (lower is better) Translates to: ENQHEIQSVNITASF*GQQYQVLLASPKSW Trigger: CCAAGACTTTGGGGAAGCAAGAAGGACCTGATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTGATTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR TCA 90 bp | TGTGAAAGAACATGTCCGGTTGACACTGCAAACAAAACAAACATGTaGACAGTATCGAAGAATAACATTTCCATGGAAGAAGAACTTTCT | + |
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Preference number: 1 (lower is better) Translates to: CERTCPVDTANKTNM*TVSKNNISMEEELS Trigger: AGAAAGTTCTTCTTCCATGGAAATGTTATTCTTCGATACTGTTCACATGTTTGTTTTGTTTGCAGTGTCAACCGGACATGTTCTTTCACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | ACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGCGAGACTGGGATTAAAGGCGTaGGCCACCATCGCCCGGCTA | + |
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Preference number: 2 (lower is better) Translates to: TDRRQGPRHSCRCHTDARLGLKA*ATIARL Trigger: TAGCCGGGCGATGGTGGCGCACGCCTTTAATCCCAG...TCTCGCATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | CTGACTGCTCTTCTGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTACTCTGGGTGGGGTTTaGTCTCTGGGTGCCAAAACG | + |
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Preference number: 2 (lower is better) Translates to: LTALLKVRSSNPSNHMVATLGGV*SLGAKT Trigger: CGTTTTGGCACCCAGAGACCAAACCCCACCCAGAGT...AGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCAGAAGAGCAGTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CAA 90 bp | CACAGCAGGCATGGTGGCAGGGGCATGAAACTGAGCAATCACACCTaGAAGGTCAAGCTTAGAGCAGAGACTACACTGGAAGCAAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: HSRHGGRGMKLSNHT*KVKLRAETTLEARR Trigger: TCGCCTTGCTTCCAGTGTAGTCTCTGCTCTAAGCTTGACCTTCAAGGTGTGATTGCTCAGTTTCATGCCCCTGCCACCATGCCTGCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CAA 90 bp | CGCTCCCAGCCTTCTGGGAGGAAAACAGGATATATGTCTCTCCCTTaGAAGAGACAACCTGCGTGTTTAACACGGCTGGTTTCCCGAGTG | + |
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Preference number: 2 (lower is better) Translates to: RSQPSGRKTGYMSLP*KRQPACLTRLVSRV Trigger: CACTCGGGAAACCAGCCGTGTTAAACACGCAGGTTGTCTCTTCAAAGGGAGAGACATATATCCTGTTTTCCTCCCAGAAGGCTGGGAGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | AGATTTCTCTGTGTAGTCCTGGCTGACCTGGACTCACTCTGTAGACCAGGCTGGAACCTCAGTGCCACGTaGCATTCTGTGGCTCTAAAG | + |
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Preference number: 2 (lower is better) Translates to: RFLCVVLADLDSLCRPGWNLSAT*HSVALK Trigger: CTTTAGAGCCACAGAATGCCACGTGGCACTGAGGTT...CCAGCCTGGTCTACAGAGTGAGTCCAGGTCAGCCAGGACTACACAGAGAAATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CAA 90 bp | TTGGGACGTCTCCTCTTGATGGGTTTGTCGTCTAGCTTCAACCCCTaGCTTGTCTGGTGGTCTCTGGGATGCAGTCCTTGTCTGAAATGT | + |
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Preference number: 2 (lower is better) Translates to: LGRLLLMGLSSSFNP*LVWWSLGCSPCLKC Trigger: ACATTTCAGACAAGGACTGCATCCCAGAGACCACCAGACAAGCAAGGGGTTGAAGCTAGACGACAAACCCATCAAGAGGAGACGTCCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | CTGACTGCTCTTCTGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCGCACTGCTCCTGGGTaGCTAGAGAAAAATTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: LTALLKVRSSNPSNHMVARTAPG*LEKNSL Trigger: AAGAGAATTTTTCTCTAGTCACCCAGGAGCAGTGCG...AGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCAGAAGAGCAGTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | GACCGTCACCACCACCTGGCTGCATTTCCAATTTTCAACATCAATCATTTCTTGGCGTGCCAGCAACCTTaGTCTTCCTGGGTACCACCA | + |
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Preference number: 2 (lower is better) Translates to: DRHHHLAAFPIFNINHFLACQQP*SSWVPP Trigger: TGGTGGTACCCAGGAAGAGCAAGGTTGCTGGCACGC...CAAGAAATGATTGATGTTGAAAATTGGAAATGCAGCCAGGTGGTGGTGACGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | TTTGGGGTCAGCAGTATCAGGTCCTTCTTGCTTCCCCAAAGTCTTGGCTTGACCGAGCTGCAGCTCTGTTaGTCTAACTATTTCCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: FGVSSIRSFLLPQSLGLTELQLC*SNYFPP Trigger: AGGAGGGAAATAGTTAGAGCAACAGAGCTGCAGCTC...GGTCAAGCCAAGACTTTGGGGAAGCAAGAAGGACCTGATACTGCTGACCCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | TTTGGGGTCAGCAGTATCAGGTCCTTCTTGCTTCCCCAAAGTCTTGGCTTGACCATATGTCTCTCCCTTTaGAGAGACAACCTGCGTGTT | + |
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Preference number: 2 (lower is better) Translates to: FGVSSIRSFLLPQSLGLTICLSL*RDNLRV Trigger: AACACGCAGGTTGTCTCTTCAAAGGGAGAGACATAT...GGTCAAGCCAAGACTTTGGGGAAGCAAGAAGGACCTGATACTGCTGACCCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | TTTGGGGTCAGCAGTATCAGGTCCTTCTTGCTTCCCCAAAGTCTTGGCTTGACCCAAGGCCCTTCCCTCTaGATACCTACCAAAGTAAAA | + |
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Preference number: 2 (lower is better) Translates to: FGVSSIRSFLLPQSLGLTQGPSL*IPTKVK Trigger: TTTTACTTTGGTAGGTATGCAGAGGGAAGGGCCTTG...GGTCAAGCCAAGACTTTGGGGAAGCAAGAAGGACCTGATACTGCTGACCCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCTACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGGGTTTGGTCTCTGGGTaGCAAAACGGCTTGAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: SLQTEDKAPDTVVDVTLMGLVSG*QNGLKS Trigger: AGACTTCAAGCCGTTTTGGCACCCAGAGACCAAACC...CATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGTAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCTACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGGGCTGGTTTCCCGAGTaGTTATTTGTGAGAGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: SLQTEDKAPDTVVDVTLMGWFPE*LFVRAR Trigger: TCTTGCTCTCACAAATAAGCACTCGGGAAACCAGCC...CATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGTAGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAAAAATTCTCTTACCTACTCCAAGACTGGAGACTCTCATGTTGGTCGCCATCCGCTCCCAGCCTTCTaGGAGGAAAACAGGATATAT | + |
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Preference number: 2 (lower is better) Translates to: EKNSLTYSKTGDSHVGRHPLPAF*EENRIY Trigger: ATATATCCTGTTTTCCTCCCAGAAGGCTGGGAGCGG...ATGGCGACCAACATGAGAGTCTCCAGTCTTGGAGTAGGTAAGAGAATTTTTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | ATAACCTCTCCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACACATAATAACCTGAACAATCCTGGCTaGTCATCCTCCAGGTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: ITSPGVSEDSYSVLTHNNLNNPG*SSSRWL Trigger: AAGCCACCTGGAGGATGACCAGCCAGGATTGTTCAG...GTTATTATGTGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGGAGAGGTTAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATAACAGCATCAAGGGCTaGAGGCATGTTGCGTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYNSIKG*RHVACQ Trigger: CTGGCACGCAACATGCCTGCAGCCCTTGATGCTGTT...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATCCCTTGCTTGTCTGGTaGTCTCTGGGATGCAGTCCT | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYPLLVW*SLGCSP Trigger: AGGACTGCATCCCAGAGACCACCAGACAAGCAAGGG...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CAA 90 bp | ATGTTATACTGTGTCCTATTACAGGTGCACCCTTTATCCCTCCTTTaGACAAAAGGCATTTGGATTCTGCACCGACAGGCTGAGAATCAA | + |
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Preference number: 2 (lower is better) Translates to: MLYCVLLQVHPLSLL*TKGIWILHRQAENQ Trigger: TTGATTCTCAGCCTGTCGGTGCAGAATCCAAATGCCTTTTGTCAAAAGGAGGGATAAAGGGTGCACCTGTAATAGGACACAGTATAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCTACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGCTCAGTAGCCAGTGTTaGTTCAAATGTCTTTATTAC | + |
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Preference number: 2 (lower is better) Translates to: SLQTEDKAPDTVVDVTLMLSSQC*FKCLYY Trigger: GTAATAAAGACATTTGAATCAACACTGGCTACTGAG...CATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGTAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATTTACCTGTTACCTCCTaGGTGAGAGCACGCACTGCT | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYLPVTS*VRARTA Trigger: AGCAGTGCGTGCTCTCACCCAGGAGGTAACAGGTAA...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAAATTCTCTTACCTACTCCAAGACTGGAGACTCTCATGTTGGTCGCCATGTGACTGATTACATATaGCATCTTAAGGGTTTAGGA | + |
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Preference number: 2 (lower is better) Translates to: EKNSLTYSKTGDSHVGRHVTDYI*HLKGLG Trigger: TCCTAAACCCTTAAGATGTCATATGTAATCAGTCAC...ATGGCGACCAACATGAGAGTCTCCAGTCTTGGAGTAGGTAAGAGAATTTTTCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATCATTTCTGGGGTGTCTaGAGACAGCTACAGTGTACT | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYHFWGV*RQLQCT Trigger: AGTACACTGTAGCTGTCTTCAGACACCCCAGAAATG...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATACACTTGTGCAGAGCTaGAGCTCTGTTGCTCTAACT | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYTLVQS*SSVALT Trigger: AGTTAGAGCAACAGAGCTGCAGCTCTGCACAAGTGT...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR GCA 90 bp | ATAACCTCTCCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACACATAATAACTCACCACCACCTGGCTaGATTTCCAATTTTCAACAT | + |
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Preference number: 2 (lower is better) Translates to: ITSPGVSEDSYSVLTHNNSPPPG*ISNFQH Trigger: ATGTTGAAAATTGGAAATGCAGCCAGGTGGTGGTGA...GTTATTATGTGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGGAGAGGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATGAATACTGTGTAACATaGGCCTTGAACAGAAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYEYCVT*ALNRRQ Trigger: CTGCCTTCTGTTCAAGGCTCATGTTACACAGTATTC...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATCCAGCAACCACATGGTaGCTCACAACCATCTATAAT | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYPATTW*LTTIYN Trigger: ATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGG...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CAA 90 bp | TCAAGTAATCTAACTCCTATCGACTACACTTCTGTTTTTCAGTCCTaGGCCACCGTATTATCCATAAGAAATATTCCTTCTTGGTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: SSNLTPIDYTSVFQS*ATVLSIRNIPSWFQ Trigger: TTGGAACCAAGAAGGAATATTTCTTATGGATAATACGGTGGCCAAGGACTGAAAAACAGAAGTGTAGTCGATAGGAGTTAGATTACTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR TCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATTGCTCGGCTCTAAAGTaGAAAAATTTAGAGTTAGCC | + |
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Preference number: 2 (lower is better) Translates to: QHEIQSVNITASFWGQQYCSALK*KNLELA Trigger: GGCTAACTCTAAATTTTTTCACTTTAGAGCCGAGCA...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CAA 90 bp | CTTTCTAAAGAGTTCTGCATTAAGCTAAAATCTGTATTATTACATTaGAACGACTCAGTTAGTCTAACCAAGCTGCCACCCATTCATGTG | + |
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Preference number: 2 (lower is better) Translates to: LSKEFCIKLKSVLLH*NDSVSLTKLPPIHV Trigger: CACATGAATGGGTGGCAGCTTGGTTAGACTAACTGAGTCGTTCAAATGTAATAATACAGATTTTAGCTTAATGCAGAACTCTTTAGAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 72 bp | AAAGCCCTGAACAATCCTGGCTGGTCATCCTCCAGGTaGCTTCTGCGGAGCGCCAGCAGCGGAGTCCACGGC | + |
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Preference number: 3 (lower is better) Translates to: KALNNPGWSSSR*LLRSASSGVHG Trigger: GCCGTGGACTCCGCTGCTGGCGCTCCGCAGAAGCCACCTGGAGGATGACCAGCCAGGATTGTTCAGGGCTTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR GCA 72 bp | CTGGTGAGCCAACAGCATCAAGGGCTGCAGGCATGTTaGGTGCCAGCAACCTTGCTCTTCCTGGGTACCACC | + |
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Preference number: 3 (lower is better) Translates to: LVSQQHQGLQAC*VPATLLFLGTT Trigger: GGTGGTACCCAGGAAGAGCAAGGTTGCTGGCACGCAACATGCCTGCAGCCCTTGATGCTGTTGGCTCACCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 72 bp | GTCCTGGCTGACCTGGACTCACTCTGTAGACCAGGCTaGCCTCGAACTCAGAGATCCACCCACCTTTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: VLADLDSLCRPG*PRTQRSTHLCH Trigger: GTGGCAAAGGTGGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTCCAGGTCAGCCAGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR GCA 72 bp | GTAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCTCTaGCTCCCAAGTGCTGGGACTAAAGGCGTGTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: VGWPRTQKSACL*LPSAGTKGVCH Trigger: GTGGCACACGCCTTTAGTCCCAGCACTTGGGAGGCAGAGACAGGCAGATTTCTGAGTTCGAGGCCAGCCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR CCA 72 bp | GTGACCAAGACAATGAAAGCCCTGAACAATCCTGGCTaGTCATCCTCCAGGTGGCTTCTGCGGAGCGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: VTKTMKALNNPG*SSSRWLLRSAS Trigger: GCTGGCGCTCCGCAGAAGCCACCTGGAGGATGACCAGCCAGGATTGTTCAGGGCTTTCATTGTCTTGGTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR GCA 72 bp | CCAGGCTGGCCTCGAACTCAGAGATCCACCCACCTTTaGCACCCAAGTCCTGGAAATAAAGGCATGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: PGWPRTQRSTHL*HPSPGNKGMHH Trigger: GTGGTGCATGCCTTTATTTCCAGGACTTGGGTGGCAAAGGTGGGTGGATCTCTGAGTTCGAGGCCAGCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| 3UTR-3UTR CAA 90 bp | CTGACTGCTCTTCTGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTGACTCTGGGTGGGGTTaGGTCTCTGGGTGCCAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: LTALLKVRSSNPSNHMVADSGWG*VSGCQN Trigger: GTTTTGGCACCCAGAGACCAAACCCCACCCAGAGTC...AGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCAGAAGAGCAGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR GCA 72 bp | GGCCCTTCCCTCTGCATACCTACCAAAGTAAAAAGGTaGTCCGTGCTGGTGAGCCAACAGCATCAAGGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: GPSLCIPTKVKR*SVLVSQQHQGL Trigger: CAGCCCTTGATGCTGTTGGCTCACCAGCACGGAGCACCTTTTTACTTTGGTAGGTATGCAGAGGGAAGGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | CTCCAAGACTGGAGACTCTCATGTTGGTCGCCATTGTaGGGGGTCCTTGCAGGTATCTCAAACAGCCAGGGT | + |
|
Preference number: 3 (lower is better) Translates to: LQDWRLSCWSPL*GVLAGISNSQG Trigger: ACCCTGGCTGTTTGAGATACCTGCAAGGACCCCCCACAATGGCGACCAACATGAGAGTCTCCAGTCTTGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | CAATGTGACCAAGACAATGAAAGCCCTGAACAATCCTaGCTGGTCATCCTCCAGGTGGCTTCTGCGGAGCGC | + |
|
Preference number: 3 (lower is better) Translates to: QCDQDNESPEQS*LVILQVASAER Trigger: GCGCTCCGCAGAAGCCACCTGGAGGATGACCAGCCAGGATTGTTCAGGGCTTTCATTGTCTTGGTCACATTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | CTGACTGCTCTTCTGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTGAGATCCACCCACCTTaGCCACCCAAGTCCTGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: LTALLKVRSSNPSNHMVAEIHPP*PPKSWK Trigger: TTTCCAGGACTTGGGTGGCAAAGGTGGGTGGATCTC...AGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCAGAAGAGCAGTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR GCA 72 bp | TGGTCCCCAAGTCTCCAGAGTCAAGGCCCTTCCCTCTaGATACCTACCAAAGTAAAAAGGTGCTCCGTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: WSPSLQSQGPSL*IPTKVKRCSVL Trigger: CAGCACGGAGCACCTTTTTACTTTGGTAGGTATGCAGAGGGAAGGGCCTTGACTCTGGAGACTTGGGGACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | ATTACAGCGGTAAGGCATGAGAGCACACAGCAGGCATaGTGGCAGGGGCATGAAACTGAGCAATCACACCTT | + |
|
Preference number: 3 (lower is better) Translates to: ITAVRHESTQQA*WQGHETEQSHL Trigger: AAGGTGTGATTGCTCAGTTTCATGCCCCTGCCACCATGCCTGCTGTGTGCTCTCATGCCTTACCGCTGTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | AATAAATCTTTAAAAAGAAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGGCTGCAGGCATGTaGCGTGCCAGCAACCTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: NKSLKRRRRRRRRRRRRRRAAGM*RASNLA Trigger: AGCAAGGTTGCTGGCACGCAACATGCCTGCAGCCCT...CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTTCTTTTTAAAGATTTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | TTTGGGGTCAGCAGTATCAGGTCCTTCTTGCTTCCCCAAAGTCTTGGCTTGACCTCTGGGATGCAGTCCTaGTCTGAAATGTCACAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: FGVSSIRSFLLPQSLGLTSGMQS*SEMSQQ Trigger: CTGCTGTGACATTTCAGACAAGGACTGCATCCCAGA...GGTCAAGCCAAGACTTTGGGGAAGCAAGAAGGACCTGATACTGCTGACCCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR GCA 72 bp | CCAGGACCCTATGCCATGCTTGGGGCTGTATTCTCCTaGTGTCTAATTAGGGAGAGGCATAATACATGCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PGPYAMLGAVFS*CLIRERHNTCL Trigger: CAGGCATGTATTATGCCTCTCCCTAATTAGACAGCAGGAGAATACAGCCCCAAGCATGGCATAGGGTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | GGAACCATCACAGAACATCCCGAAGTGGGAAACAACTaGGTTGTCCCACGAGAGTGTGAAAGAACATGTCCG | + |
|
Preference number: 3 (lower is better) Translates to: GTITEHPEVGNN*VVPRECERTCP Trigger: CGGACATGTTCTTTCACACTCTCGTGGGACAACCCAGTTGTTTCCCACTTCGGGATGTTCTGTGATGGTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | GGTTTGTCGTCTAGCTTCAACCCCTTGCTTGTCTGGTaGTCTCTGGGATGCAGTCCTTGTCTGAAATGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: GLSSSFNPLLVW*SLGCSPCLKCH Trigger: GTGACATTTCAGACAAGGACTGCATCCCAGAGACCACCAGACAAGCAAGGGGTTGAAGCTAGACGACAAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR TCA 72 bp | GTTACCTCCTGGGTGAGAGCACGCACTGCTCCTGGGTaGCTAGAGAAAAATTCTCTTACCTACTCCAAGACT | + |
|
Preference number: 3 (lower is better) Translates to: VTSWVRARTAPG*LEKNSLTYSKT Trigger: AGTCTTGGAGTAGGTAAGAGAATTTTTCTCTAGTCACCCAGGAGCAGTGCGTGCTCTCACCCAGGAGGTAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR GCA 72 bp | CCACTTACCTGTTACCTCCTGGGTGAGAGCACGCACTaGTCCTGGGTGACTAGAGAAAAATTCTCTTACCTA | + |
|
Preference number: 3 (lower is better) Translates to: PLTCYLLGESTH*SWVTREKFSYL Trigger: TAGGTAAGAGAATTTTTCTCTAGTCACCCAGGAGCAGTGCGTGCTCTCACCCAGGAGGTAACAGGTAAGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | ACCTGTTACCTCCTGGGTGAGAGCACGCACTGCTCCTaGGTGACTAGAGAAAAATTCTCTTACCTACTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: TCYLLGESTHCS*VTREKFSYLLQ Trigger: TTGGAGTAGGTAAGAGAATTTTTCTCTAGTCACCCAGGAGCAGTGCGTGCTCTCACCCAGGAGGTAACAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | ATGGGTTTGTCGTCTAGCTTCAACCCCTTGCTTGTCTaGTGGTCTCTGGGATGCAGTCCTTGTCTGAAATGT | + |
|
Preference number: 3 (lower is better) Translates to: MGLSSSFNPLLV*WSLGCSPCLKC Trigger: ACATTTCAGACAAGGACTGCATCCCAGAGACCACCAGACAAGCAAGGGGTTGAAGCTAGACGACAAACCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR TCA 72 bp | ACCACATGGTGGCTCACAACCATCTATAATGGGACCTaGTGTCCATTTCTGGGGTGTCTGAAGACAGCTACA | + |
|
Preference number: 3 (lower is better) Translates to: TTWWLTTIYNGT*CPFLGCLKTAT Trigger: TGTAGCTGTCTTCAGACACCCCAGAAATGGACATCAGGTCCCATTATAGATGGTTGTGAGCCACCATGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR TCA 72 bp | GTGTCCTATTACAGGTGCACCCTTTATCCCTCCTTTTaGCAAAAGGCATTTGGATTCTGCACCGACAGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: VSYYRCTLYPSF*QKAFGFCTDRL Trigger: CAGCCTGTCGGTGCAGAATCCAAATGCCTTTTGTCAAAAGGAGGGATAAAGGGTGCACCTGTAATAGGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTCTACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGTATATGTCTCTCCCTTaGAAGAGACAACCTGCGTGT | + |
|
Preference number: 3 (lower is better) Translates to: SLQTEDKAPDTVVDVTLMYMSLP*KRQPAC Trigger: ACACGCAGGTTGTCTCTTCAAAGGGAGAGACATATA...CATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGTAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | ACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGCGAGAAACATCAATCATTTCTaGTTCAGGAAGCCAAGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: TDRRQGPRHSCRCHTDARNINHF*FRKPRD Trigger: GTCCCTTGGCTTCCTGAACAAGAAATGATTGATGTT...TCTCGCATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR TCA 72 bp | GCATGCACCACCACCACCCAGGTGACTGATTACATATaGCATCTTAAGGGTTTAGGAGAAGAATACCGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: ACTTTTQVTDYI*HLKGLGEEYRK Trigger: CTTCCGGTATTCTTCTCCTAAACCCTTAAGATGTCATATGTAATCAGTCACCTGGGTGGTGGTGGTGCATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR TCA 72 bp | CTCTCCTATCAGGTTAACAGGAGATTACAAAGTACCTaGGGAACCATCACAGAACATCCCGAAGTGGGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: LSYQVNRRLQST*GTITEHPEVGN Trigger: GTTTCCCACTTCGGGATGTTCTGTGATGGTTCCTCAGGTACTTTGTAATCTCCTGTTAACCTGATAGGAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | GTGCACCCTTTATCCCTCCTTTTGACAAAAGGCATTTaGATTCTGCACCGACAGGCTGAGAATCAACATGAA | + |
|
Preference number: 3 (lower is better) Translates to: VHPLSLLLTKGI*ILHRQAENQHE Trigger: TTCATGTTGATTCTCAGCCTGTCGGTGCAGAATCCAAATGCCTTTTGTCAAAAGGAGGGATAAAGGGTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTCTACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGAAAGAACATGTCCGGTaGACACTGCAAACAAAACAA | + |
|
Preference number: 3 (lower is better) Translates to: SLQTEDKAPDTVVDVTLMKEHVR*TLQTKQ Trigger: TTGTTTTGTTTGCAGTGTCAACCGGACATGTTCTTT...CATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGTAGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | AATAAATCTTTAAAAAGAAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGTCTGTTTTTCAGTCCTaGGCCACCGTATTATCCATA | + |
|
Preference number: 3 (lower is better) Translates to: NKSLKRRRRRRRRRRRRRSVFQS*ATVLSI Trigger: TATGGATAATACGGTGGCCAAGGACTGAAAAACAGA...CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTTCTTTTTAAAGATTTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR GCA 72 bp | GGTAGTCCTGTCTATAGACCGTCACCACCACCTGGCTaGATTTCCAATTTTCAACATCAATCATTTCTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: GSPVYRPSPPPG*ISNFQHQSFLV Trigger: AACAAGAAATGATTGATGTTGAAAATTGGAAATGCAGCCAGGTGGTGGTGACGGTCTATAGACAGGACTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR-3UTR CAA 90 bp | GAGAAAAATTCTCTTACCTACTCCAAGACTGGAGACTCTCATGTTGGTCGCCATTACTTAATTCTATGTTaGAGACAGGGTTTCTCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: EKNSLTYSKTGDSHVGRHYLILC*RQGFSV Trigger: CACAGAGAAACCCTGTCTCAAACATAGAATTAAGTA...ATGGCGACCAACATGAGAGTCTCCAGTCTTGGAGTAGGTAAGAGAATTTTTCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CCA 72 bp | CAAACATGTGAACAGTATCGAAGAATAACATTTCCATaGAAGAAGAACTTTCTGGACCGTTCTATTCCTTAC | + |
|
Preference number: 3 (lower is better) Translates to: QTCEQYRRITFP*KKNFLDRSIPY Trigger: GTAAGGAATAGAACGGTCCAGAAAGTTCTTCTTCCATGGAAATGTTATTCTTCGATACTGTTCACATGTTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | GCTGGTGAGCCAACAGCATCAAGGGCTGCAGGCATGTaGCGTGCCAGCAACCTTGCTCTTCCTGGGTACCAC | + |
|
Preference number: 4 (lower is better) Translates to: AGEPTASRAAGM*RASNLALPGYH Trigger: GTGGTACCCAGGAAGAGCAAGGTTGCTGGCACGCAACATGCCTGCAGCCCTTGATGCTGTTGGCTCACCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS-3UTR GCA 90 bp | TCTCTACAGACAGAAGACAAGGCCCCAGACACAGTTGTAGATGTCACACTGATGGCACCCACCAGTGAGTaGGGAGAGTGGGGAGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLQTEDKAPDTVVDVTLMAPTSE*GEWGEG Trigger: CCCCTCTCCCCACTCTCCGCACTCACTGGTGGGTGC...CATCAGTGTGACATCTACAACTGTGTCTGGGGCCTTGTCTTCTGTCTGTAGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | CTCCTCTTGATGGGTTTGTCGTCTAGCTTCAACCCCTaGCTTGTCTGGTGGTCTCTGGGATGCAGTCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LLLMGLSSSFNP*LVWWSLGCSPC Trigger: ACAAGGACTGCATCCCAGAGACCACCAGACAAGCAAGGGGTTGAAGCTAGACGACAAACCCATCAAGAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | TTCCTTGTCCTCTTGGGACGTCTCCTCTTGATGGGTTaGTCGTCTAGCTTCAACCCCTTGCTTGTCTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FLVLLGRLLLMG*SSSFNPLLVWW Trigger: CCACCAGACAAGCAAGGGGTTGAAGCTAGACGACAAACCCATCAAGAGGAGACGTCCCAAGAGGACAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS-3UTR CCA 90 bp | AGCTGCAGCTCTGTTGCTCTAACTATTTCCCTCCTCTGGATCTTAACCAACAGCTCCTTGGGAGCGCTGTaGTCCAGCTGCTTCCTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SCSSVALTISLLWILTNSSLGAL*SSCFLA Trigger: AGCTAGGAAGCAGCTGGACCACAGCGCTCCCAAGGA...GCTGTTGGTTAAGATCCAGAGGAGGGAAATAGTTAGAGCAACAGAGCTGCAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS-3UTR CCA 90 bp | GAGAAAAATTCTCTTACCTACTCCAAGACTGGAGACTCTCATGTTGGTCGCCATAGTGAGTGCGGAGAGTaGGGAGAGGGGTGTTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: EKNSLTYSKTGDSHVGRHSECGE*GEGCWL Trigger: CAGCCAACACCCCTCTCCCCACTCTCCGCACTCACT...ATGGCGACCAACATGAGAGTCTCCAGTCTTGGAGTAGGTAAGAGAATTTTTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | CCATCACAGAACATCCCGAAGTGGGAAACAACTGGGTaGTCCCACGAGAGTGTGAAAGAACATGTCCGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: PSQNIPKWETTG*SHESVKEHVRL Trigger: CAACCGGACATGTTCTTTCACACTCTCGTGGGACAACCCAGTTGTTTCCCACTTCGGGATGTTCTGTGATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS-3UTR GCA 90 bp | GACCGTCACCACCACCTGGCTGCATTTCCAATTTTCAACATCAATCATTTCTTGGCGCTGTGGTCCAGCTaGTTCCTAGCTGGACAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: DRHHHLAAFPIFNINHFLALWSS*FLAGQR Trigger: TCTCTGTCCAGCTAGGAAGCAGCTGGACCACAGCGC...CAAGAAATGATTGATGTTGAAAATTGGAAATGCAGCCAGGTGGTGGTGACGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS-3UTR CCA 90 bp | AGCTGCAGCTCTGTTGCTCTAACTATTTCCCTCCTCTGGATCTTAACCAACAGCTACTTGCTTCCTGGATaGTGGCACCCACCAGTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SCSSVALTISLLWILTNSYLLPG*WHPPVS Trigger: ACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTA...GCTGTTGGTTAAGATCCAGAGGAGGGAAATAGTTAGAGCAACAGAGCTGCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | CATGGTGGCAGGGGCATGAAACTGAGCAATCACACCTaGAAGGTCAAGCTTAGAGCAGAGACTACACTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: HGGRGMKLSNHT*KVKLRAETTLE Trigger: TTCCAGTGTAGTCTCTGCTCTAAGCTTGACCTTCAAGGTGTGATTGCTCAGTTTCATGCCCCTGCCACCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS-3UTR TCA 90 bp | CAACATGAAATACAGTCAGTAAACATAACAGCATCATTTTGGGGTCAGCAGTATGGTGGCACCCACCAGTaGGTGCGGAGAGTGGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QHEIQSVNITASFWGQQYGGTHQ*VRRVGR Trigger: TCTCCCCACTCTCCGCACTCACTGGTGGGTGCCACC...ATACTGCTGACCCCAAAATGATGCTGTTATGTTTACTGACTGTATTTCATGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | CCTTCTGGGAGGAAAACAGGATATATGTCTCTCCCTTaGAAGAGACAACCTGCGTGTTTAACACGGCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: PSGRKTGYMSLP*KRQPACLTRLV Trigger: AACCAGCCGTGTTAAACACGCAGGTTGTCTCTTCAAAGGGAGAGACATATATCCTGTTTTCCTCCCAGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | TGTGTCCTATTACAGGTGCACCCTTTATCCCTCCTTTaGACAAAAGGCATTTGGATTCTGCACCGACAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CVLLQVHPLSLL*TKGIWILHRQA Trigger: AGCCTGTCGGTGCAGAATCCAAATGCCTTTTGTCAAAAGGAGGGATAAAGGGTGCACCTGTAATAGGACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | CTAACCAAGCTGCCACCCATTCATGTGTCTAAATGTTaGGATACTCTTCTTTTTGCCTGGACAGCTGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LTKLPPIHVSKC*DTLLFAWTAGP Trigger: GGGACCAGCTGTCCAGGCAAAAAGAAGAGTATCCAAACATTTAGACACATGAATGGGTGGCAGCTTGGTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| 3UTR CAA 72 bp | CTAACTCCTATCGACTACACTTCTGTTTTTCAGTCCTaGGCCACCGTATTATCCATAAGAAATATTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LTPIDYTSVFQS*ATVLSIRNIPS Trigger: AGAAGGAATATTTCTTATGGATAATACGGTGGCCAAGGACTGAAAAACAGAAGTGTAGTCGATAGGAGTTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CCA 90 bp | ATACTTGCTTCCTGGATGGTGGCACCCACCAGTGAGTGCGGAGAGTaGGGAGAGGGGTGTTGGCTGCCGCAGGTTTTGCGTCGTCATCCT | + |
|
Preference number: 5 (lower is better) Translates to: ILASWMVAPTSECGE*GEGCWLPQVLRRHP Trigger: AGGATGACGACGCAAAACCTGCGGCAGCCAACACCCCTCTCCCCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CCA 90 bp | CCTCTGCACCAAGCTGTCAATTCGGGATACTTGCTTCCTGGATGGTaGCACCCACCAGTGAGTGCGGAGAGTGGGGAGAGGGGTGTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PLHQAVNSGYLLPGW*HPPVSAESGERGVG Trigger: GCCAACACCCCTCTCCCCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTATCCCGAATTGACAGCTTGGTGCAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CCA 90 bp | CATGTCCCCTCTGCACCAAGCTGTCAATTCGGGATACTTGCTTCCTaGATGGTGGCACCCACCAGTGAGTGCGGAGAGTGGGGAGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: HVPSAPSCQFGILAS*MVAPTSECGEWGEG Trigger: CCCCTCTCCCCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTATCCCGAATTGACAGCTTGGTGCAGAGGGGACATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS TCA 90 bp | CTGTCAATTCGGGATACTTGCTTCCTGGATGGTGGCACCCACCAGTaGGTGCGGAGAGTGGGGAGAGGGGTGTTGGCTGCCGCAGGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: LSIRDTCFLDGGTHQ*VRRVGRGVLAAAGF Trigger: AAAACCTGCGGCAGCCAACACCCCTCTCCCCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTATCCCGAATTGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CCA 90 bp | GGGAGTACGTTCCTTGGGAGCGCTGTGGTCCAGCTGCTTCCTAGCTaGACAGAGACACCTCTCATGTCCCCTCTGCACCAAGCTGTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: GSTFLGSAVVQLLPS*TETPLMSPLHQAVN Trigger: ATTGACAGCTTGGTGCAGAGGGGACATGAGAGGTGTCTCTGTCCAGCTAGGAAGCAGCTGGACCACAGCGCTCCCAAGGAACGTACTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CCA 72 bp | TCCTGGATGGTGGCACCCACCAGTGAGTGCGGAGAGTaGGGAGAGGGGTGTTGGCTGCCGCAGGTTTTGCGT | + |
|
Preference number: 6 (lower is better) Translates to: SWMVAPTSECGE*GEGCWLPQVLR Trigger: ACGCAAAACCTGCGGCAGCCAACACCCCTCTCCCCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CAA 90 bp | AGTGAGTGCGGAGAGTGGGGAGAGGGGTGTTGGCTGCCGCAGGTTTaGCGTCGTCATCCTTGGTGTCAAGAGGGCCTTGCGGCAAAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: SECGEWGEGCWLPQV*RRHPWCQEGLAAKA Trigger: AGCCTTTGCCGCAAGGCCCTCTTGACACCAAGGATGACGACGCAAAACCTGCGGCAGCCAACACCCCTCTCCCCACTCTCCGCACTCACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
||
| CDS CAA 90 bp | ACACCTCTCATGTCCCCTCTGCACCAAGCTGTCAATTCGGGATACTaGCTTCCTGGATGGTGGCACCCACCAGTGAGTGCGGAGAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: TPLMSPLHQAVNSGY*LPGWWHPPVSAESG Trigger: CCCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTATCCCGAATTGACAGCTTGGTGCAGAGGGGACATGAGAGGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| CDS CCA 72 bp | TCTGCACCAAGCTGTCAATTCGGGATACTTGCTTCCTaGATGGTGGCACCCACCAGTGAGTGCGGAGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SAPSCQFGILAS*MVAPTSECGEW Trigger: CCACTCTCCGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTATCCCGAATTGACAGCTTGGTGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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| CDS CAA 72 bp | ATGTCCCCTCTGCACCAAGCTGTCAATTCGGGATACTaGCTTCCTGGATGGTGGCACCCACCAGTGAGTGCG | + |
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Preference number: 6 (lower is better) Translates to: MSPLHQAVNSGY*LPGWWHPPVSA Trigger: CGCACTCACTGGTGGGTGCCACCATCCAGGAAGCAAGTATCCCGAATTGACAGCTTGGTGCAGAGGGGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109488.8 |
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