Pregenerated sensors for SNF8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006058Ensembl transcript IDs: ENSMUST00000006217.10, ENSMUST00000107700.4
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCATGCCTCCCACAGGGATaGTGCCGAATCCAGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PGLFTDRASSGLLLSTPPCLPQG*CRIQCP Trigger: TGGGCACTGGATTCGGCATCATCCCTGTGGGAGGCA...TGGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | GTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCTGCCTCCCACAGGGATaGTGCCGAATCCAGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: VQVYSQTGHLLACCCLPLCLPQG*CRIQCP Trigger: TGGGCACTGGATTCGGCATCATCCCTGTGGGAGGCA...GAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | TCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCGTTTCTTCTTGGCAATaGCGCCAGCTCCCACCCCGC | + |
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Preference number: 4 (lower is better) Translates to: SRFIHRQGIFWPAAVYPSVSSWQ*RQLPPR Trigger: GCGGGGTGGGAGCTGGCGCCATTGCCAAGAAGAAAC...GGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | CAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCACCGGGAACAGACTGGATaGGGTAAGTGCCTCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: QVYSQTGHLLACCCLPLHREQTG*GKCLPQ Trigger: CTGTGGGAGGCACTTACCTCATCCAGTCTGTTCCCG...GTGGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | TGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTGTTTCTTCTTGGCAATaGCGCCAGCTCCCACCCCGC | + |
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Preference number: 4 (lower is better) Translates to: CPGLFTDRASSGLLLSTPVSSWQ*RQLPPR Trigger: GCGGGGTGGGAGCTGGCGCCATTGCCAAGAAGAAAC...AGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | TTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCCGGGAACAGACTGGATaGGGTAAGTGCCTCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: LSRFIHRQGIFWPAAVYPREQTG*GKCLPQ Trigger: CTGTGGGAGGCACTTACCTCATCCAGTCTGTTCCCG...GGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | GTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCAGCTGTTTTGACATCTaGGCCAGCTGGTCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: VQVYSQTGHLLACCCLPLSCFDI*ASWSSA Trigger: GGCTGAGGACCAGCTGGCCCAGATGTCAAAACAGCT...GAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTTCCAGCACTTGCCGTaGTCGCTCCGTCTCCCATTT | + |
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Preference number: 4 (lower is better) Translates to: LSRFIHRQGIFWPAAVYPFQHLP*SLRLPF Trigger: AAATGGGAGACGGAGCGAGCACGGCAAGTGCTGGAA...GGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006217.10 |
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| CDS-3UTR CCA 90 bp | TGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCTGCGAGTTTCTTCTTaGCAATGGCGCCAGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: CPGLFTDRASSGLLLSTPLRVSS*QWRQLP Trigger: TGGGAGCTGGCGCCATTGCCAAGAAGAAACTCGCAG...AGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | GTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTGCGAGTTTCTTCTTaGCAATGGCGCCAGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: VVQVYSQTGHLLACCCLPLRVSS*QWRQLP Trigger: TGGGAGCTGGCGCCATTGCCAAGAAGAAACTCGCAG...GGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | AGTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCATGTCCAGCTGTTTTaGCATCTGGGCCAGCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: SCPGLFTDRASSGLLLSTHVQLF*HLGQLV Trigger: GACCAGCTGGCCCAGATGTCAAAACAGCTGGACATG...GGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | GTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCTGCAGCACAACAGTGTaGTCCATATTGAGCTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: VQVYSQTGHLLACCCLPLCSTTV*SILSSA Trigger: CGCTGAGCTCAATATGGATCACACTGTTGTGCTGCA...GAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | GTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCCTTTTAACACCTGCTaGTGTAGCTCCTCCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: VQVYSQTGHLLACCCLPLPFNTC*CSSSRV Trigger: AACTCTGGAGGAGCTACATCAGCAGGTGTTAAAAGG...GAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | TTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTGCAGCACAACAGTGTaGTCCATATTGAGCTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LSRFIHRQGIFWPAAVYPCSTTV*SILSSA Trigger: CGCTGAGCTCAATATGGATCACACTGTTGTGCTGCA...GGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR GCA 90 bp | CAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCACATCCACCCCAATGGTTaGACACATGTCTTGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: QVYSQTGHLLACCCLPLHIHPNG*THVLEL Trigger: CAGTTCCAAGACATGTGTGCAACCATTGGGGTGGAT...GTGGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | GTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCAAGGGAAGGCTTCTTTaGCCTCCTCAGCTGATATCT | + |
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Preference number: 4 (lower is better) Translates to: VQVYSQTGHLLACCCLPLKGRLL*PPQLIS Trigger: AGATATCAGCTGAGGAGGCCAAAGAAGCCTTCCCTT...GAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | TCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCCTTGCTTGTGCTTGCTaGCAAATTCTTCTAGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: SRFIHRQGIFWPAAVYPSLACAC*QILLGW Trigger: CCAACCTAGAAGAATTTGCCAGCAAGCACAAGCAAG...GGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | GTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCTTGCTTGTGCTTGCTaGCAAATTCTTCTAGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: VQVYSQTGHLLACCCLPLLACAC*QILLGW Trigger: CCAACCTAGAAGAATTTGCCAGCAAGCACAAGCAAG...GAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CCA 90 bp | GTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCAAGGGAAGGCTTCTTTaGCCTCCTCAGCTGATATCT | + |
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Preference number: 4 (lower is better) Translates to: VVQVYSQTGHLLACCCLPKGRLL*PPQLIS Trigger: AGATATCAGCTGAGGAGGCCAAAGAAGCCTTCCCTT...GGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR TCA 90 bp | AGTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTTTTAACACCTGCTaGTGTAGCTCCTCCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: SCPGLFTDRASSGLLLSTPFNTC*CSSSRV Trigger: AACTCTGGAGGAGCTACATCAGCAGGTGTTAAAAGG...GGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCCTTATACTTGGCCTCTaGGAGTTTCTTCTTGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: LSRFIHRQGIFWPAAVYPLILGL*EFLLGN Trigger: ATTGCCAAGAAGAAACTCGCAGAGGCCAAGTATAAG...GGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR GCA 90 bp | TGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCTTATACTTGGCCTCTaGGAGTTTCTTCTTGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: CPGLFTDRASSGLLLSTPLILGL*EFLLGN Trigger: ATTGCCAAGAAGAAACTCGCAGAGGCCAAGTATAAG...AGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCTCTTGCTTGTGCTTaGTGGCAAATTCTTCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: LSRFIHRQGIFWPAAVYPSLACA*WQILLG Trigger: ACCTAGAAGAATTTGCCAGCAAGCACAAGCAAGAGA...GGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR GCA 90 bp | AGTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCTCTCTTGCTTGTGCTTaGTGGCAAATTCTTCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: SCPGLFTDRASSGLLLSTSLACA*WQILLG Trigger: ACCTAGAAGAATTTGCCAGCAAGCACAAGCAAGAGA...GGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | CAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCACTCTGCGAGTTTCTTCTaGGCAATGGCGCCAGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: QVYSQTGHLLACCCLPLHSASFF*AMAPAP Trigger: GGGAGCTGGCGCCATTGCCAAGAAGAAACTCGCAGA...GTGGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | GTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCTCTGCGAGTTTCTTCTaGGCAATGGCGCCAGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: VVQVYSQTGHLLACCCLPSASFF*AMAPAP Trigger: GGGAGCTGGCGCCATTGCCAAGAAGAAACTCGCAGA...GGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | CAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCACCCTCGCTCCTTATACTaGGCCTCTGCGAGTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: QVYSQTGHLLACCCLPLHPRSLY*ASASFF Trigger: GAAGAAACTCGCAGAGGCCAAGTATAAGGAGCGAGG...GTGGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | TCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCCCTCGCTCCTTATACTaGGCCTCTGCGAGTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SRFIHRQGIFWPAAVYPSPRSLY*ASASFF Trigger: GAAGAAACTCGCAGAGGCCAAGTATAAGGAGCGAGG...GGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | TGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCTCCATTCCGATGTTaGAGGGCCAGGCACACTTCA | + |
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Preference number: 5 (lower is better) Translates to: CPGLFTDRASSGLLLSTPPPFRC*RARHTS Trigger: TGAAGTGTGCCTGGCCCTCAAACATCGGAATGGAGG...AGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | CCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCACAAGGGAAGGCTTCTTaGGCCTCCTCAGCTGATATC | + |
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Preference number: 5 (lower is better) Translates to: PGLFTDRASSGLLLSTPPQGKAS*ASSADI Trigger: GATATCAGCTGAGGAGGCCAAAGAAGCCTTCCCTTG...TGGAGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | GTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCACATGTCCAGCTGTTTaGACATCTGGGCCAGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: VVQVYSQTGHLLACCCLPTCPAV*TSGPAG Trigger: ACCAGCTGGCCCAGATGTCAAAACAGCTGGACATGT...GGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | AGTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCCATTCCGATGTTaGAGGGCCAGGCACACTTCA | + |
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Preference number: 5 (lower is better) Translates to: SCPGLFTDRASSGLLLSTPPFRC*RARHTS Trigger: TGAAGTGTGCCTGGCCCTCAAACATCGGAATGGAGG...GGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | TTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCCCTGATCAGGTCGTCTaGGCTGACATCCTGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: LSRFIHRQGIFWPAAVYPPDQVV*ADILSK Trigger: TTTGCTCAGGATGTCAGCCAAGACGACCTGATCAGG...GGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAA 53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | GTTGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCCTGATCAGGTCGTCTaGGCTGACATCCTGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: VVQVYSQTGHLLACCCLPPDQVV*ADILSK Trigger: TTTGCTCAGGATGTCAGCCAAGACGACCTGATCAGG...GGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS-3UTR CAA 90 bp | TGTCCAGGTTTATTCACAGACAGGGCATCTTCTGGCCTGCTGCTGTCTACCCCTCAAGGGAAGGCTTCTTaGGCCTCCTCAGCTGATATC | + |
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Preference number: 5 (lower is better) Translates to: CPGLFTDRASSGLLLSTPQGKAS*ASSADI Trigger: GATATCAGCTGAGGAGGCCAAAGAAGCCTTCCCTTG...AGGGGTAGACAGCAGCAGGCCAGAAGATGCCCTGTCTGTGAATAAACCTGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS CAA 72 bp | CCTCGCTCCTTATACTTGGCCTCTGCGAGTTTCTTCTaGGCAATGGCGCCAGCTCCCACCCCGCGCCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: PRSLYLASASFF*AMAPAPTPRRC Trigger: GCACCGGCGCGGGGTGGGAGCTGGCGCCATTGCCAAGAAGAAACTCGCAGAGGCCAAGTATAAGGAGCGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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| CDS CAA 72 bp | AGCTCCTCCAGAGTTATCAGACCTCCATTCCGATGTTaGAGGGCCAGGCACACTTCAATAATCTGGACACCC | + |
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Preference number: 6 (lower is better) Translates to: SSSRVIRPPFRC*RARHTSIIWTP Trigger: GGGTGTCCAGATTATTGAAGTGTGCCTGGCCCTCAAACATCGGAATGGAGGTCTGATAACTCTGGAGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006217.10 ENSMUST00000107700.4 |
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