Pregenerated sensors for SNCG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023064Ensembl transcript IDs: ENSMUST00000023826.5
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCCAGCAGGGGGTGCTGGCGCTGGCAGTAGCGTGTGTGGACTTGTaGCACTGGGCTAGGGACAGAGAACTTGGGCAACCTGCAGGGCAC | + |
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Preference number: 1 (lower is better) Translates to: SQQGVLALAVACVDL*HWARDRELGQPAGH Trigger: GTGCCCTGCAGGTTGCCCAAGTTCTCTGTCCCTAGCCCAGTGCCACAAGTCCACACACGCTACTGCCAGCGCCAGCACCCCCTGCTGGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| 3UTR CAA 90 bp | AGGAGCCAGCAGGGGGTGCTGGCGCTGGCAGTAGCGTGTGTGGACTaGTGGCACTGGGCTAGGGACAGAGAACTTGGGCAACCTGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: RSQQGVLALAVACVD*WHWARDRELGQPAG Trigger: CCCTGCAGGTTGCCCAAGTTCTCTGTCCCTAGCCCAGTGCCACAAGTCCACACACGCTACTGCCAGCGCCAGCACCCCCTGCTGGCTCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| 3UTR-3UTR TCA 90 bp | GCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTaGGCCTCTGTGGTTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: AGHSRQGIQCARLRQGPRQRGVP*ASVVGW Trigger: CCAGCCAACCACAGAGGCTCAAGGGACACCCCTCTG...CCTTGGACCCTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| 3UTR CCA 72 bp | CTGGCGCTGGCAGTAGCGTGTGTGGACTTGTGGCACTaGGCTAGGGACAGAGAACTTGGGCAACCTGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: LALAVACVDLWH*ARDRELGQPAG Trigger: CCCTGCAGGTTGCCCAAGTTCTCTGTCCCTAGCCCAGTGCCACAAGTCCACACACGCTACTGCCAGCGCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| 3UTR-3UTR CAA 90 bp | TGTGTGGACTTGTGGCACTGGGCTAGGGACAGAGAACTTGGGCAACCTGCAGGGATTCAGTGTGCCAGGTaGAGACAGGGTCCAAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: CVDLWHWARDRELGQPAGIQCAR*RQGPRQ Trigger: CTGCCTTGGACCCTGTCTCAACCTGGCACACTGAAT...CCCTGCAGGTTGCCCAAGTTCTCTGTCCCTAGCCCAGTGCCACAAGTCCACACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| 3UTR CAA 72 bp | CAGGGGGTGCTGGCGCTGGCAGTAGCGTGTGTGGACTaGTGGCACTGGGCTAGGGACAGAGAACTTGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: QGVLALAVACVD*WHWARDRELGQ Trigger: TTGCCCAAGTTCTCTGTCCCTAGCCCAGTGCCACAAGTCCACACACGCTACTGCCAGCGCCAGCACCCCCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR TCA 90 bp | AGAGAACTTGGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGGCACCACCCCGGTGGTaGCCACGATGTTTTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: RELGQPAGHSRQGIQCARAPPRW*PRCFQP Trigger: AGGCTGAAAACATCGTGGTCACCACCGGGGTGGTGC...CCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCCAAGTTCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR GCA 90 bp | GGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCAGCTCACGGCATTGGCCTaGTCCTTGGTCTTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GHSRQGIQCARLRQGPRQLTALA*SLVFSA Trigger: GGCTGAGAAGACCAAGGAGCAGGCCAATGCCGTGAG...CTGCCTTGGACCCTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CCA 90 bp | GTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTGAGCCTCTGTGGTTGGCTGCATTGGCCTGCTCCTTaGTCTTCTCAGCCACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: VETGSKAEGCPLSLCGWLHWPAP*SSQPLR Trigger: CCTCAGTGGCTGAGAAGACCAAGGAGCAGGCCAATG...CAGCCAACCACAGAGGCTCAAGGGACACCCCTCTGCCTTGGACCCTGTCTCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR TCA 90 bp | TCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTGAGCCTCGGTCTTCTCAGCCACTaGGGTGACACTTTGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: SVCQVETGSKAEGCPLSLGLLSH*GDTLYH Trigger: GTGGTACAAAGTGTCACCTCAGTGGCTGAGAAGACC...GAGGCTCAAGGGACACCCCTCTGCCTTGGACCCTGTCTCAACCTGGCACACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR GCA 90 bp | GTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTGAGCCTCTGTGGTTGGCTGCTTGGTCTTCTCAGCTaGCTCCGTTACTCCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: VETGSKAEGCPLSLCGWLLGLLS*LRYSLL Trigger: AAGCAGGGAGTAACGGAGGCAGCTGAGAAGACCAAG...CAGCCAACCACAGAGGCTCAAGGGACACCCCTCTGCCTTGGACCCTGTCTCAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CCA 90 bp | GTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTGAGCCTCTGTGGTTGGCTGCTTCACTCACGGCATTaGCCTGCTCCTTGGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VETGSKAEGCPLSLCGWLLHSRH*PAPWSS Trigger: AGAAGACCAAGGAGCAGGCCAATGCCGTGAGTGAAG...CAGCCAACCACAGAGGCTCAAGGGACACCCCTCTGCCTTGGACCCTGTCTCAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CCA 90 bp | TGTGTGGACTTGTGGCACTGGGCTAGGGACAGAGAACTTGGGCAACCTGCAGGGTGCTCTTTGGCTTCTTaGTCCTGTGCAGGGGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: CVDLWHWARDRELGQPAGCSLAS*SCAGGS Trigger: GGAACCCCCTGCACAGGACCAAGAAGCCAAAGAGCA...CCCTGCAGGTTGCCCAAGTTCTCTGTCCCTAGCCCAGTGCCACAAGTCCACACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR TCA 90 bp | TCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTGAGCCTCTCTCAGCCACTGAGGTaGCACTTTGTACCACGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SVCQVETGSKAEGCPLSLSQPLR*HFVPRS Trigger: AGAACGTGGTACAAAGTGTCACCTCAGTGGCTGAGA...GAGGCTCAAGGGACACCCCTCTGCCTTGGACCCTGTCTCAACCTGGCACACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CCA 90 bp | GGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGTCTCCTCTTGCTCTTTaGCTTCTTGGTCCTGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GQPAGHSRQGIQCARLRQSPLAL*LLGPVQ Trigger: CTGCACAGGACCAAGAAGCCAAAGAGCAAGAGGAGA...CTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CCA 90 bp | GGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGCCACAACACCTTCCTTaGCAATGGAGAAGCCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GQPAGHSRQGIQCARLRQPQHLP*QWRSLS Trigger: AGAAAGGCTTCTCCATTGCCAAGGAAGGTGTTGTGG...CTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR GCA 90 bp | TCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCAGAGGGGTGTCCCTTGAGCCTCTCTTCATTCTCCTCTTaGTCTTTGGCTTCTTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SVCQVETGSKAEGCPLSLSSFSS*SLASWS Trigger: GGACCAAGAAGCCAAAGAGCAAGAGGAGAATGAAGA...GAGGCTCAAGGGACACCCCTCTGCCTTGGACCCTGTCTCAACCTGGCACACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CCA 90 bp | GCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGGGTCCAAGGAGTCTTCTCCACTCTTaGCCTCTTCATTCTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: AGHSRQGIQCARLRQGPRSLLHS*PLHSPL Trigger: AAGAGGAGAATGAAGAGGCCAAGAGTGGAGAAGACT...CCTTGGACCCTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GACAGAGAACTTGGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCGGTTCCAAGTCCTCCTaGCGCACCACCCCGGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: DRELGQPAGHSRQGIQCAGSKSS*RTTPVV Trigger: CACCACCGGGGTGGTGCGCAAGGAGGACTTGGAACC...GGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCCAAGTTCTCTGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGGCATTGGCCTGCTCCTaGGTCTTCTCAGCCACTGAG | + |
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Preference number: 5 (lower is better) Translates to: GQPAGHSRQGIQCARLRQALACS*VFSATE Trigger: CTCAGTGGCTGAGAAGACCAAGGAGCAGGCCAATGC...CTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GACAGAGAACTTGGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCGCCTCCTCCACGGTCTaGTTGGCCACTGTGTTGACG | + |
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Preference number: 5 (lower is better) Translates to: DRELGQPAGHSRQGIQCAASSTV*LATVLT Trigger: CGTCAACACAGTGGCCAACAAGACCGTGGAGGAGGC...GGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCCAAGTTCTCTGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS GCA 90 bp | CTTGGCCTCTTCATTCTCCTCTTGCTCTTTGGCTTCTTGGTCCTGTaGAGGGGGTTCCAAGTCCTCCTTGCGCACCACCCCGGTGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: LGLFILLLLFGFLVL*RGFQVLLAHHPGGD Trigger: GTCACCACCGGGGTGGTGCGCAAGGAGGACTTGGAACCCCCTGCACAGGACCAAGAAGCCAAAGAGCAAGAGGAGAATGAAGAGGCCAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGTTGTTGGCCACTGTGTaGACGCTGCTGACCACAGCT | + |
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Preference number: 5 (lower is better) Translates to: GQPAGHSRQGIQCARLRQLLATV*TLLTTA Trigger: AGCTGTGGTCAGCAGCGTCAACACAGTGGCCAACAA...CTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCCCACAACACCTTCCTaGGCAATGGAGAAGCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: AGHSRQGIQCARLRQGPRPTTPS*AMEKPF Trigger: GAAAGGCTTCTCCATTGCCAAGGAAGGTGTTGTGGG...CCTTGGACCCTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GACAGAGAACTTGGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCTACATAACCCCCTCCTaGGTCTTCTCAGCTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: DRELGQPAGHSRQGIQCAYITPS*VFSAAS Trigger: GGAGGCAGCTGAGAAGACCAAGGAGGGGGTTATGTA...GGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCCAAGTTCTCTGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | TCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGGGTCCAAGGCAGAGGGGTTCCGTTACTCCCTGCTaGGTCTTTTCTACAGCACCC | + |
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Preference number: 5 (lower is better) Translates to: SRQGIQCARLRQGPRQRGSVTPC*VFSTAP Trigger: GGGTGCTGTAGAAAAGACCAAGCAGGGAGTAACGGA...ACCCCTCTGCCTTGGACCCTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS GCA 90 bp | ACTGTGTTGACGCTGCTGACCACAGCTTCACTCACGGCATTGGCCTaGTCCTTGGTCTTCTCAGCCACTGAGGTGACACTTTGTACCACG | + |
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Preference number: 5 (lower is better) Translates to: TVLTLLTTASLTALA*SLVFSATEVTLCTT Trigger: CGTGGTACAAAGTGTCACCTCAGTGGCTGAGAAGACCAAGGAGCAGGCCAATGCCGTGAGTGAAGCTGTGGTCAGCAGCGTCAACACAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCAGGTTGAGACAGACGTTCTCCTTGGTTTaGGTGCCCACATACATAACC | + |
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Preference number: 5 (lower is better) Translates to: GQPAGHSRQGIQCARLRQTFSLV*VPTYIT Trigger: GGTTATGTATGTGGGCACCAAAACCAAGGAGAACGT...CTGTCTCAACCTGGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS-3UTR CAA 90 bp | GACAGAGAACTTGGGCAACCTGCAGGGCACTCTAGGCAGGGCATTCAGTGTGCCTTCTCCTCTTGCTCTTaGGCTTCTTGGTCCTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: DRELGQPAGHSRQGIQCAFSSCS*ASWSCA Trigger: TGCACAGGACCAAGAAGCCAAAGAGCAAGAGGAGAA...GGCACACTGAATGCCCTGCCTAGAGTGCCCTGCAGGTTGCCCAAGTTCTCTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 90 bp | ACCACCCCGGTGGTGACCACGATGTTTTCAGCCTCCTCCACGGTCTaGTTGGCCACTGTGTTGACGCTGCTGACCACAGCTTCACTCACG | + |
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Preference number: 6 (lower is better) Translates to: TTPVVTTMFSASSTV*LATVLTLLTTASLT Trigger: CGTGAGTGAAGCTGTGGTCAGCAGCGTCAACACAGTGGCCAACAAGACCGTGGAGGAGGCTGAAAACATCGTGGTCACCACCGGGGTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 90 bp | TTCTCCACTCTTGGCCTCTTCATTCTCCTCTTGCTCTTTGGCTTCTaGGTCCTGTGCAGGGGGTTCCAAGTCCTCCTTGCGCACCACCCC | + |
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Preference number: 6 (lower is better) Translates to: FSTLGLFILLLLFGF*VLCRGFQVLLAHHP Trigger: GGGGTGGTGCGCAAGGAGGACTTGGAACCCCCTGCACAGGACCAAGAAGCCAAAGAGCAAGAGGAGAATGAAGAGGCCAAGAGTGGAGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS GCA 72 bp | TTCATTCTCCTCTTGCTCTTTGGCTTCTTGGTCCTGTaGAGGGGGTTCCAAGTCCTCCTTGCGCACCACCCC | + |
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Preference number: 6 (lower is better) Translates to: FILLLLFGFLVL*RGFQVLLAHHP Trigger: GGGGTGGTGCGCAAGGAGGACTTGGAACCCCCTGCACAGGACCAAGAAGCCAAAGAGCAAGAGGAGAATGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 72 bp | GTGGTGACCACGATGTTTTCAGCCTCCTCCACGGTCTaGTTGGCCACTGTGTTGACGCTGCTGACCACAGCT | + |
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Preference number: 6 (lower is better) Translates to: VVTTMFSASSTV*LATVLTLLTTA Trigger: AGCTGTGGTCAGCAGCGTCAACACAGTGGCCAACAAGACCGTGGAGGAGGCTGAAAACATCGTGGTCACCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 90 bp | TTGACGCTGCTGACCACAGCTTCACTCACGGCATTGGCCTGCTCCTaGGTCTTCTCAGCCACTGAGGTGACACTTTGTACCACGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LTLLTTASLTALACS*VFSATEVTLCTTFS Trigger: GGAGAACGTGGTACAAAGTGTCACCTCAGTGGCTGAGAAGACCAAGGAGCAGGCCAATGCCGTGAGTGAAGCTGTGGTCAGCAGCGTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 90 bp | TTGGCCACTGTGTTGACGCTGCTGACCACAGCTTCACTCACGGCATaGGCCTGCTCCTTGGTCTTCTCAGCCACTGAGGTGACACTTTGT | + |
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Preference number: 6 (lower is better) Translates to: LATVLTLLTTASLTA*ACSLVFSATEVTLC Trigger: ACAAAGTGTCACCTCAGTGGCTGAGAAGACCAAGGAGCAGGCCAATGCCGTGAGTGAAGCTGTGGTCAGCAGCGTCAACACAGTGGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 72 bp | TCCTTGGTTTTGGTGCCCACATACATAACCCCCTCCTaGGTCTTCTCAGCTGCCTCCGTTACTCCCTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLVLVPTYITPS*VFSAASVTPCL Trigger: CAAGCAGGGAGTAACGGAGGCAGCTGAGAAGACCAAGGAGGGGGTTATGTATGTGGGCACCAAAACCAAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 72 bp | TCAGCCACTGAGGTGACACTTTGTACCACGTTCTCCTaGGTTTTGGTGCCCACATACATAACCCCCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SATEVTLCTTFS*VLVPTYITPSL Trigger: CAAGGAGGGGGTTATGTATGTGGGCACCAAAACCAAGGAGAACGTGGTACAAAGTGTCACCTCAGTGGCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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| CDS CAA 90 bp | TTGGTCTTCTCAGCCACTGAGGTGACACTTTGTACCACGTTCTCCTaGGTTTTGGTGCCCACATACATAACCCCCTCCTTGGTCTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LVFSATEVTLCTTFS*VLVPTYITPSLVFS Trigger: TGAGAAGACCAAGGAGGGGGTTATGTATGTGGGCACCAAAACCAAGGAGAACGTGGTACAAAGTGTCACCTCAGTGGCTGAGAAGACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023826.5 |
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