Pregenerated sensors for SNCB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034891Ensembl transcript IDs: ENSMUST00000036825.14, ENSMUST00000134110.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTaGGGGGACTCTCCATGCCACAATCACAACAAACGACGCCCGCGC | + |
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Preference number: 1 (lower is better) Translates to: GSGLAAHPGTRSHGG*GDSPCHNHNKRRPR Trigger: GCGCGGGCGTCGTTTGTTGTGATTGTGGCATGGAGAGTCCCCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR TCA 90 bp | TCCCAGCCGGACCTCTCTGCCCGACTCCAGTCCACGCCTCAGGGATaGACGCGGGCAAGTAGGACAGACGGAAGGGCAGGGCAGACACTA | + |
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Preference number: 1 (lower is better) Translates to: SQPDLSARLQSTPQG*TRASRTDGRAGQTL Trigger: TAGTGTCTGCCCTGCCCTTCCGTCTGTCCTACTTGCCCGCGTTCATCCCTGAGGCGTGGACTGGAGTCGGGCAGAGAGGTCCGGCTGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR TCA 90 bp | CATAGAACATGCTACATCCGAGCAGACACTGGACCAAATGGAGGGTaGGGGGCAACACTGGTAGGGCGGGGCTCCCAGCCGGACCTCTCT | + |
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Preference number: 1 (lower is better) Translates to: HRTCYIRADTGPNGG*GATLVGRGSQPDLS Trigger: AGAGAGGTCCGGCTGGGAGCCCCGCCCTACCAGTGTTGCCCCTCACCCTCCATTTGGTCCAGTGTCTGCTCGGATGTAGCATGTTCTATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR-3UTR CCA 90 bp | ACTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGGCTGAGGGAGGGGGCATaGCACGACCTGGCTCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: TGERLGRPPRDTLTRWVGLREGA*HDLAPG Trigger: ACCAGGAGCCAGGTCGTGCCATGCCCCCTCCCTCAG...CCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR-3UTR TCA 90 bp | ACTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGGGGACCAAATGGAGGGTaGGGGGCAACACTGGTAGGG | + |
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Preference number: 2 (lower is better) Translates to: TGERLGRPPRDTLTRWVGGPNGG*GATLVG Trigger: CCCTACCAGTGTTGCCCCTCACCCTCCATTTGGTCC...CCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGT 70% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR-3UTR CCA 90 bp | ACTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGGAAGGAATTGTGCTGCTaGTGCGAGGCCCTCCTGGAC | + |
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Preference number: 2 (lower is better) Translates to: TGERLGRPPRDTLTRWVGKELCC*CEALLD Trigger: GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTT...CCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR GCA 72 bp | AACACTGGTAGGGCGGGGCTCCCAGCCGGACCTCTCTaGCCGACTCCAGTCCACGCCTCAGGGATGAACGCG | + |
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Preference number: 3 (lower is better) Translates to: NTGRAGLPAGPL*PTPVHASGMNA Trigger: CGCGTTCATCCCTGAGGCGTGGACTGGAGTCGGGCAGAGAGGTCCGGCTGGGAGCCCCGCCCTACCAGTGTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR TCA 72 bp | GACCTCTCTGCCCGACTCCAGTCCACGCCTCAGGGATaGACGCGGGCAAGTAGGACAGACGGAAGGGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: DLSARLQSTPQG*TRASRTDGRAG Trigger: CCCTGCCCTTCCGTCTGTCCTACTTGCCCGCGTTCATCCCTGAGGCGTGGACTGGAGTCGGGCAGAGAGGTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR-3UTR CAA 90 bp | CACTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGAGGAAGATCTCGTGTTaGGGGGAAAAGGTAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: HWGAAWPPTPGHAHTVGGRKISC*GEKVEG Trigger: TCCTTCTACCTTTTCCCCCAAACACGAGATCTTCCT...CCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR TCA 72 bp | TGCTACATCCGAGCAGACACTGGACCAAATGGAGGGTaGGGGGCAACACTGGTAGGGCGGGGCTCCCAGCCG | + |
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Preference number: 3 (lower is better) Translates to: CYIRADTGPNGG*GATLVGRGSQP Trigger: CGGCTGGGAGCCCCGCCCTACCAGTGTTGCCCCTCACCCTCCATTTGGTCCAGTGTCTGCTCGGATGTAGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR CCA 72 bp | TTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTaGGGGGACTCTCCATGCCACAATCACAACAAACGA | + |
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Preference number: 3 (lower is better) Translates to: LAAHPGTRSHGG*GDSPCHNHNKR Trigger: TCGTTTGTTGTGATTGTGGCATGGAGAGTCCCCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR GCA 72 bp | AGGGCAGGGCAGACACTAACACAGGCCCTGAGGAAGTaGCTCAGAGCCGAAGGAAGATCTCGTGTTTGGGGG | + |
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Preference number: 3 (lower is better) Translates to: RAGQTLTQALRK*LRAEGRSRVWG Trigger: CCCCCAAACACGAGATCTTCCTTCGGCTCTGAGGCACTTCCTCAGGGCCTGTGTTAGTGTCTGCCCTGCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR GCA 90 bp | CACTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGCAGGCCCGTGGCTGCTaGAATGTTCCCAGCCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: HWGAAWPPTPGHAHTVGGQARGC*NVPSPR Trigger: TCTGGGGCTGGGAACATTGCAGCAGCCACGGGCCTG...CCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR TCA 90 bp | CTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGGGGTATTCCTCCTGGGGTaGGTCCTCATAACTTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: LGSGLAAHPGTRSHGGWGVFLLG*VLITFP Trigger: GGGGAAAGTTATGAGGACTCACCCCAGGAGGAATAC...CCCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAG 68% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR GCA 90 bp | CACTGGGGAGCGGCTTGGCCGCCCACCCCGGGACACGCTCACACGGTGGGTGGGTCCTCCCAGATGCGATaGCTGCTCCTTGGTTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: HWGAAWPPTPGHAHTVGGSSQMR*LLLGFL Trigger: GAGAAAACCAAGGAGCAGGCATCGCATCTGGGAGGA...CCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| 3UTR CAA 72 bp | AGATTGGCTTTATTCATGGACACACTGGGGAGCGGCTaGGCCGCCCACCCCGGGACACGCTCACACGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RLALFMDTLGSG*AAHPGTRSHGG Trigger: CCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGCCGCTCCCCAGTGTGTCCATGAATAAAGCCAATCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR GCA 90 bp | GACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCAGGCCCGTGGCTGCTaGAATGTTCCCAGCCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: DRDRDRRNCAAGARPSWTQARGC*NVPSPR Trigger: TCTGGGGCTGGGAACATTGCAGCAGCCACGGGCCTG...GGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | GACTCTCCATGCCACAATCACAACAAACGACGCCCGCGCTCGGACCGAGCGGGCAGAGGACGCCTTCCTTaGTCTTCTCTGCTGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: DSPCHNHNKRRPRSDRAGRGRLP*SSLLPR Trigger: CCGAGGCAGCAGAGAAGACCAAGGAAGGCGTCCTCT...GCCCGCTCGGTCCGAGCGCGGGCGTCGTTTGTTGTGATTGTGGCATGGAGAGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CCA 90 bp | GACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCTCCTCAGCGGCTTCTTaGGCCACCTCCTCTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: DRDRDRRNCAAGARPSWTSSAAS*ATSSGF Trigger: GAAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGA...GGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | GGACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACAGAGGACGCCTTCCTTaGTCTTCTCTGCTGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GQGQGQKELCCWCEALLDRGRLP*SSLLPR Trigger: CCGAGGCAGCAGAGAAGACCAAGGAAGGCGTCCTCT...GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCTTGGGCCACCTCCTCTaGCTTCAGGTCTGTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: TGTGTEGIVLLVRGPPGPLGHLL*LQVCGE Trigger: TTCCCCACAGACCTGAAGCCAGAGGAGGTGGCCCAA...GGGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR GCA 90 bp | GACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCCACTCCACTGGTCTTaGTTCCGACATAGAGGACGC | + |
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Preference number: 4 (lower is better) Translates to: DRDRDRRNCAAGARPSWTPLHWS*FRHRGR Trigger: GCGTCCTCTATGTCGGAAGCAAGACCAGTGGAGTGG...GGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR GCA 90 bp | GACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCCCAGATGCGATGCCTaGTCCTTGGTTTTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: DRDRDRRNCAAGARPSWTPRCDA*SLVFSA Trigger: GGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGG...GGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR GCA 90 bp | ACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCCCCAGATGCGATGCCTaGTCCTTGGTTTTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TGTGTEGIVLLVRGPPGPPRCDA*SLVFSA Trigger: GGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGG...GGGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGT 60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | CGGGCAAGTAGGACAGACGGAAGGGCAGGGCAGACACTAACACAGGCCCTGAGGGCGATGCCTGCTCCTTaGTTTTCTCAGCCACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RASRTDGRAGQTLTQALRAMPAP*FSQPLR Trigger: CCTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGC...CCTCAGGGCCTGTGTTAGTGTCTGCCCTGCCCTTCCGTCTGTCCTACTTGCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CCA 90 bp | GGACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACGCGATGCCTGCTCCTTaGTTTTCTCAGCCACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GQGQGQKELCCWCEALLDAMPAP*FSQPLR Trigger: CCTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGC...GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | CGGGCAAGTAGGACAGACGGAAGGGCAGGGCAGACACTAACACAGGCCCTGAGGTTTTCACCAGGCCCGTaGCTGCTGCAATGTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: RASRTDGRAGQTLTQALRFSPGP*LLQCSQ Trigger: CTGGGAACATTGCAGCAGCCACGGGCCTGGTGAAAA...CCTCAGGGCCTGTGTTAGTGTCTGCCCTGCCCTTCCGTCTGTCCTACTTGCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR TCA 90 bp | GACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCGGTTTTCTCAGCCACTaGGGCTACACCTTGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: DRDRDRRNCAAGARPSWTGFLSH*GYTLYH Trigger: GTGGTACAAGGTGTAGCCTCAGTGGCTGAGAAAACC...GGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR TCA 90 bp | GGACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACGGTTTTCTCAGCCACTaGGGCTACACCTTGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: GQGQGQKELCCWCEALLDGFLSH*GYTLYH Trigger: GTGGTACAAGGTGTAGCCTCAGTGGCTGAGAAAACC...GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR TCA 90 bp | ACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCGTATTCCTCCTGGGGTaGGTCCTCATAACTTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: TGTGTEGIVLLVRGPPGPVFLLG*VLITFP Trigger: GGGGAAAGTTATGAGGACTCACCCCAGGAGGAATAC...GGGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | GCCCTGAGGAAGTGCCTCAGAGCCGAAGGAAGATCTCGTGTTTGGGGGAAAAGGTCCTCAGCGGCTTCTTaGGCCACCTCCTCTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: ALRKCLRAEGRSRVWGKRSSAAS*ATSSGF Trigger: GAAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGA...CCTTTTCCCCCAAACACGAGATCTTCCTTCGGCTCTGAGGCACTTCCTCAGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CCA 90 bp | GGACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACTCTGGCTCGTATTCCTaGTATTCCTCCTGGGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: GQGQGQKELCCWCEALLDSGSYS*YSSWGE Trigger: CTCACCCCAGGAGGAATACCAGGAATACGAGCCAGA...GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCTCTGGCTCGTATTCCTaGTATTCCTCCTGGGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: TGTGTEGIVLLVRGPPGPSGSYS*YSSWGE Trigger: CTCACCCCAGGAGGAATACCAGGAATACGAGCCAGA...GGGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | CTGCCCGACTCCAGTCCACGCCTCAGGGATGAACGCGGGCAAGTAGGACAGACGCTGGCTTCAGGTCTGTaGGGAACTCTTCCTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LPDSSPRLRDERGQVGQTLASGL*GTLPFS Trigger: TGAAAAAGGAAGAGTTCCCCACAGACCTGAAGCCAG...CGTCTGTCCTACTTGCCCGCGTTCATCCCTGAGGCGTGGACTGGAGTCGGGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CCA 90 bp | AACACAGGCCCTGAGGAAGTGCCTCAGAGCCGAAGGAAGATCTCGTGTTTGGGGTTGGGCCACCTCCTCTaGCTTCAGGTCTGTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: NTGPEEVPQSRRKISCLGLGHLL*LQVCGE Trigger: TTCCCCACAGACCTGAAGCCAGAGGAGGTGGCCCAA...CCCCAAACACGAGATCTTCCTTCGGCTCTGAGGCACTTCCTCAGGGCCTGTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CCA 90 bp | GACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCTGGCTTCAGGTCTGTaGGGAACTCTTCCTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: DRDRDRRNCAAGARPSWTLASGL*GTLPFS Trigger: TGAAAAAGGAAGAGTTCCCCACAGACCTGAAGCCAG...GGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| 3UTR CAA 72 bp | GAGGAAGTGCCTCAGAGCCGAAGGAAGATCTCGTGTTaGGGGGAAAAGGTAGAAGGACAGCCCTGGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: EEVPQSRRKISC*GEKVEGQPWLW Trigger: CCAGAGCCAGGGCTGTCCTTCTACCTTTTCCCCCAAACACGAGATCTTCCTTCGGCTCTGAGGCACTTCCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR GCA 90 bp | CTAACACAGGCCCTGAGGAAGTGCCTCAGAGCCGAAGGAAGATCTCGTGTTTGGCCACTCCACTGGTCTTaGTTCCGACATAGAGGACGC | + |
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Preference number: 4 (lower is better) Translates to: LTQALRKCLRAEGRSRVWPLHWS*FRHRGR Trigger: GCGTCCTCTATGTCGGAAGCAAGACCAGTGGAGTGG...CCAAACACGAGATCTTCCTTCGGCTCTGAGGCACTTCCTCAGGGCCTGTGTTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CCA 90 bp | GGACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACATAACTTTCCCCTTCTaGTTCCATCAGAGGCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: GQGQGQKELCCWCEALLDITFPF*FHQRLN Trigger: ATTGAGCCTCTGATGGAACCAGAAGGGGAAAGTTAT...GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CCA 90 bp | AGTAGGACAGACGGAAGGGCAGGGCAGACACTAACACAGGCCCTGAGGAAGTGCATAACTTTCCCCTTCTaGTTCCATCAGAGGCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: SRTDGRAGQTLTQALRKCITFPF*FHQRLN Trigger: ATTGAGCCTCTGATGGAACCAGAAGGGGAAAGTTAT...GCACTTCCTCAGGGCCTGTGTTAGTGTCTGCCCTGCCCTTCCGTCTGTCCTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CAA 90 bp | GGACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACGCCACAACGCCCTCCTaGGCCATGGACAGGCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: GQGQGQKELCCWCEALLDATTPS*AMDRPF Trigger: GAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGC...GTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CAA 90 bp | CTCTCCATGCCACAATCACAACAAACGACGCCCGCGCTCGGACCGAGCGGGCTGCTCCTCAGCGGCTTCTaGGGCCACCTCCTCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: LSMPQSQQTTPALGPSGLLLSGF*GHLLWL Trigger: AAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAG...CAGCCCGCTCGGTCCGAGCGCGGGCGTCGTTTGTTGTGATTGTGGCATGGAGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CAA 90 bp | CTGCCCGACTCCAGTCCACGCCTCAGGGATGAACGCGGGCAAGTAGGACAGACGTGCGATGCCTGCTCCTaGGTTTTCTCAGCCACTGAG | + |
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Preference number: 5 (lower is better) Translates to: LPDSSPRLRDERGQVGQTCDACS*VFSATE Trigger: CTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGCA...CGTCTGTCCTACTTGCCCGCGTTCATCCCTGAGGCGTGGACTGGAGTCGGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS-3UTR CAA 90 bp | ACAGGGACAGGGACAGAAGGAATTGTGCTGCTGGTGCGAGGCCCTCCTGGACCCTGCGATGCCTGCTCCTaGGTTTTCTCAGCCACTGAG | + |
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Preference number: 5 (lower is better) Translates to: TGTGTEGIVLLVRGPPGPCDACS*VFSATE Trigger: CTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGCA...GGGTCCAGGAGGGCCTCGCACCAGCAGCACAATTCCTTCTGTCCCTGTCCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CCA 90 bp | CAGCCCCAGAGAACACAGCTCCTCCCAGATGCGATGCCTGCTCCTTaGTTTTCTCAGCCACTGAGGCTACACCTTGTACCACTCCACTGG | + |
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Preference number: 5 (lower is better) Translates to: QPQRTQLLPDAMPAP*FSQPLRLHLVPLHW Trigger: CCAGTGGAGTGGTACAAGGTGTAGCCTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGGAGGAGCTGTGTTCTCTGGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CCA 90 bp | TCTGGTTCCATCAGAGGCTCAATCAGGGGCTCCTCAGCGGCTTCTTaGGCCACCTCCTCTGGCTTCAGGTCTGTGGGGAACTCTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: SGSIRGSIRGSSAAS*ATSSGFRSVGNSSF Trigger: AAAGGAAGAGTTCCCCACAGACCTGAAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAGCCCCTGATTGAGCCTCTGATGGAACCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS-3UTR CAA 90 bp | ATAGAACATGCTACATCCGAGCAGACACTGGACCAAATGGAGGGTGAGGGGCAAGCCACAACGCCCTCCTaGGCCATGGACAGGCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: IEHATSEQTLDQMEGEGQATTPS*AMDRPF Trigger: GAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGC...TTGCCCCTCACCCTCCATTTGGTCCAGTGTCTGCTCGGATGTAGCATGTTCTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036825.14 |
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| CDS GCA 90 bp | ATGTTCCCAGCCCCAGAGAACACAGCTCCTCCCAGATGCGATGCCTaGTCCTTGGTTTTCTCAGCCACTGAGGCTACACCTTGTACCACT | + |
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Preference number: 5 (lower is better) Translates to: MFPAPENTAPPRCDA*SLVFSATEATPCTT Trigger: AGTGGTACAAGGTGTAGCCTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGGAGGAGCTGTGTTCTCTGGGGCTGGGAACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CCA 90 bp | CCTTGGTTTTCTCAGCCACTGAGGCTACACCTTGTACCACTCCACTaGTCTTGCTTCCGACATAGAGGACGCCTTCCTTGGTCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: PWFSQPLRLHLVPLH*SCFRHRGRLPWSSL Trigger: CAGAGAAGACCAAGGAAGGCGTCCTCTATGTCGGAAGCAAGACCAGTGGAGTGGTACAAGGTGTAGCCTCAGTGGCTGAGAAAACCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CCA 72 bp | ATCAGAGGCTCAATCAGGGGCTCCTCAGCGGCTTCTTaGGCCACCTCCTCTGGCTTCAGGTCTGTGGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: IRGSIRGSSAAS*ATSSGFRSVGN Trigger: GTTCCCCACAGACCTGAAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAGCCCCTGATTGAGCCTCTGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CAA 72 bp | CATCAGAGGCTCAATCAGGGGCTCCTCAGCGGCTTCTaGGGCCACCTCCTCTGGCTTCAGGTCTGTGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: HQRLNQGLLSGF*GHLLWLQVCGE Trigger: TTCCCCACAGACCTGAAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAGCCCCTGATTGAGCCTCTGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CAA 90 bp | TTCTGGTTCCATCAGAGGCTCAATCAGGGGCTCCTCAGCGGCTTCTaGGGCCACCTCCTCTGGCTTCAGGTCTGTGGGGAACTCTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: FWFHQRLNQGLLSGF*GHLLWLQVCGELFL Trigger: AAGGAAGAGTTCCCCACAGACCTGAAGCCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAGCCCCTGATTGAGCCTCTGATGGAACCAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS GCA 72 bp | GCCCCAGAGAACACAGCTCCTCCCAGATGCGATGCCTaGTCCTTGGTTTTCTCAGCCACTGAGGCTACACCT | + |
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Preference number: 6 (lower is better) Translates to: APENTAPPRCDA*SLVFSATEATP Trigger: AGGTGTAGCCTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGGAGGAGCTGTGTTCTCTGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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| CDS CCA 72 bp | TCTCAGCCACTGAGGCTACACCTTGTACCACTCCACTaGTCTTGCTTCCGACATAGAGGACGCCTTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SQPLRLHLVPLH*SCFRHRGRLPW Trigger: CCAAGGAAGGCGTCCTCTATGTCGGAAGCAAGACCAGTGGAGTGGTACAAGGTGTAGCCTCAGTGGCTGAGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036825.14 ENSMUST00000134110.2 |
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