Pregenerated sensors for SNCA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025889Ensembl transcript IDs: ENSMUST00000114268.5, ENSMUST00000163779.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATTTAAGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTaGTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGGGATGCT | + |
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Preference number: 1 (lower is better) Translates to: NLSVKPQQYPQHTRP*YQVFTVVRGEHRDA Trigger: AGCATCCCGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACTTAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR-3UTR TCA 90 bp | ACAGCACACAAGACCCTGCTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGTTTGAGAAAAGGTCATaGCTGGGCACATTGGAACTG | + |
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Preference number: 2 (lower is better) Translates to: TAHKTLLPGFHCSERGAPFEKRS*LGTLEL Trigger: CAGTTCCAATGTGCCCAGTCATGACCTTTTCTCAAA...CGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCTTGTGTGCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR-3UTR TCA 90 bp | GGACGCCGATCACTGCTGATGGAAGACTTTGAAACACACTGTACAGCTTTGAGATGGGCACATTGGAACTaGGCACTTGTACGCCATGGA | + |
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Preference number: 2 (lower is better) Translates to: GRRSLLMEDFETHCTALRWAHWN*ALVRHG Trigger: TCCATGGCGTACAAGTGCTCAGTTCCAATGTGCCCA...TCTCAAAGCTGTACAGTGTGTTTCAAAGTCTTCCATCAGCAGTGATCGGCGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR-3UTR TCA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCCACACTGTACAGCTTTaGGAAAAGGTCATGACTGGG | + |
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Preference number: 2 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFHTVQL*EKVMTG Trigger: CCCAGTCATGACCTTTTCTCAAAGCTGTACAGTGTG...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR TCA 72 bp | GCTTTGAGAAAAGGTCATGACTGGGCACATTGGAACTaGGCACTTGTACGCCATGGAAGAGCAGCCGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: ALRKGHDWAHWN*ALVRHGRAAGR Trigger: TCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTGCCCAGTCATGACCTTTTCTCAAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR-3UTR CAA 90 bp | GGACGCCGATCACTGCTGATGGAAGACTTTGAAACACACTGTACAGCTTTGAGAATTGGAACTGAGCACTaGTACGCCATGGAAGAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: GRRSLLMEDFETHCTALRIGTEH*YAMEEQ Trigger: CTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAAT...TCTCAAAGCTGTACAGTGTGTTTCAAAGTCTTCCATCAGCAGTGATCGGCGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR-3UTR CAA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCACACACTGTACAGCTTaGAGAAAAGGTCATGACTGG | + |
|
Preference number: 3 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFTHCTA*RKGHDW Trigger: CCAGTCATGACCTTTTCTCAAAGCTGTACAGTGTGT...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR-3UTR CAA 90 bp | TCATTCTTAGACAGAAAGAGTCATTCAGGACACCTAAAACTCTTGGAGCAAATCACACACTGTACAGCTTaGAGAAAAGGTCATGACTGG | + |
|
Preference number: 3 (lower is better) Translates to: SFLDRKSHSGHLKLLEQITHCTA*RKGHDW Trigger: CCAGTCATGACCTTTTCTCAAAGCTGTACAGTGTGT...GATTTGCTCCAAGAGTTTTAGGTGTCCTGAATGACTCTTTCTGTCTAAGAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | CACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGCCCTCCACTGTCTTCTaGGCGACTGCTGTCACACCA | + |
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Preference number: 4 (lower is better) Translates to: HIGTEHLYAMEEQPADLRPSTVF*ATAVTP Trigger: TGGTGTGACAGCAGTCGCTCAGAAGACAGTGGAGGG...CCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | CACAAGACCCTGCTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGGGATGCTGTCTTCTGAGCGACTaGTGTCACACCAGTCACCAC | + |
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Preference number: 4 (lower is better) Translates to: HKTLLPGFHCSERGAPGCCLLSD*CHTSHH Trigger: GTGGTGACTGGTGTGACAGCAGTCGCTCAGAAGACA...GCATCCCGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCTTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CCA 90 bp | ACTGGGCACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTGCCACACCCTGCTTaGTTTTCTCAGCAGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TGHIGTEHLYAMEEQPADLPHPA*FSQQQP Trigger: TGGCTGCTGCTGAGAAAACCAAGCAGGGTGTGGCAG...ATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTGCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CCA 90 bp | TTCACTGTAGTGAGAGGGGAGCACCGGGATGCTGAGGGGCAGGTACAGGACGCCTTGTCACTTGCTCTTTaGTCTTCTCAGCCACTGTTG | + |
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Preference number: 4 (lower is better) Translates to: FTVVRGEHRDAEGQVQDALSLAL*SSQPLL Trigger: CAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAA...GGCGTCCTGTACCTGCCCCTCAGCATCCCGGTGCTCCCCTCTCACTACAGTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | CACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGGCCTCTGCCACACCCTaGTTGGTTTTCTCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HIGTEHLYAMEEQPADLRASATP*LVFSAA Trigger: TGCTGCTGAGAAAACCAAGCAGGGTGTGGCAGAGGC...CCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | ACAGCACACAAGACCCTGCTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGTGTCTTCTGAGCGACTaGTGTCACACCAGTCACCAC | + |
|
Preference number: 4 (lower is better) Translates to: TAHKTLLPGFHCSERGAPCLLSD*CHTSHH Trigger: GTGGTGACTGGTGTGACAGCAGTCGCTCAGAAGACA...CGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCTTGTGTGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CCA 90 bp | GAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGAGATTGGCAGGATTCCTTCCTGTaGGTACCCCTCCTCACCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ELSTCTPWKSSRQILGDWQDSFL*VPLLTL Trigger: AAGGGTGAGGAGGGGTACCCACAGGAAGGAATCCTG...CCAATCTCCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | CACAAGACCCTGCTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGGGATGCTTGGTAGCCTTCCTCTaGAGGCATTTCATAAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: HKTLLPGFHCSERGAPGCLVAFL*RHFISL Trigger: GAGGCTTATGAAATGCCTTCAGAGGAAGGCTACCAA...GCATCCCGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | CACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGCTTTCCAGCTGCCTCTaGCACACCCTGCTTGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: HIGTEHLYAMEEQPADLRLSSCL*HTLLGF Trigger: AAAACCAAGCAGGGTGTGGCAGAGGCAGCTGGAAAG...CCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| 3UTR CAA 72 bp | GAAAAGGTCATGACTGGGCACATTGGAACTGAGCACTaGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: EKVMTGHIGTEH*YAMEEQPADLR Trigger: CCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTGCCCAGTCATGACCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | ACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGACTTTCCAGCTGCCTCTaGCACACCCTGCTTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: TLELSTCTPWKSSRQILGLSSCL*HTLLGF Trigger: AAAACCAAGCAGGGTGTGGCAGAGGCAGCTGGAAAG...TCCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CCA 90 bp | AGACCCTGCTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGGGATGCTGAGTTGTCACTTGCTCTTTaGTCTTCTCAGCCACTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RPCYQVFTVVRGEHRDAELSLAL*SSQPLL Trigger: CAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAA...CTCAGCATCCCGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | CACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGTCCCTCCTTGGCCTTTaGAAGTCCTTTCATGAACAC | + |
|
Preference number: 4 (lower is better) Translates to: HIGTEHLYAMEEQPADLRSLLGL*KSFHEH Trigger: GTGTTCATGAAAGGACTTTCAAAGGCCAAGGAGGGA...CCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | GGACGCCGATCACTGCTGATGGAAGACTTTGAAACACACTGTACAGCTTTGAGAGCCTCTGCCACACCCTaGTTGGTTTTCTCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GRRSLLMEDFETHCTALRASATP*LVFSAA Trigger: TGCTGCTGAGAAAACCAAGCAGGGTGTGGCAGAGGC...TCTCAAAGCTGTACAGTGTGTTTCAAAGTCTTCCATCAGCAGTGATCGGCGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | CACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGTTTCATAAGCCTCACTaGCAGGATCCACAGGCATGT | + |
|
Preference number: 4 (lower is better) Translates to: HIGTEHLYAMEEQPADLRFHKPH*QDPQAC Trigger: ACATGCCTGTGGATCCTGGCAGTGAGGCTTATGAAA...CCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CCA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCCTGCCACACCCTGCTTaGTTTTCTCAGCAGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFLPHPA*FSQQQP Trigger: TGGCTGCTGCTGAGAAAACCAAGCAGGGTGTGGCAG...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | ACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGACCAACATTTGTCACTTaGTCTTTGGTCTTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TLELSTCTPWKSSRQILGPTFVT*SLVFSA Trigger: GGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGG...TCCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCTCCCTCCTTGGCCTTTaGAAGTCCTTTCATGAACAC | + |
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Preference number: 4 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFSLLGL*KSFHEH Trigger: GTGTTCATGAAAGGACTTTCAAAGGCCAAGGAGGGA...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCTTGGTAGCCTTCCTCTaGAGGCATTTCATAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFLVAFL*RHFISL Trigger: GAGGCTTATGAAATGCCTTCAGAGGAAGGCTACCAA...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCTTTCATAAGCCTCACTaGCAGGATCCACAGGCATGT | + |
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Preference number: 4 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFFHKPH*QDPQAC Trigger: ACATGCCTGTGGATCCTGGCAGTGAGGCTTATGAAA...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCTACCAGGTTTTCACTGTTGTCACTCCATaGACCACTCCTTCCTTAGTT | + |
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Preference number: 4 (lower is better) Translates to: SVKPQQYPQHTRPCYQVFTVVTP*TTPSLV Trigger: AACTAAGGAAGGAGTGGTTCATGGAGTGACAACAGT...GAAAACCTGGTAGCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | TTTGAAACACACTGTACAGCTTTGAGAAAAGGTCATGACTGGGCACATTGGAACTTTTGTCTTTCCAGCTaGCTCTGCCACACCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: FETHCTALRKGHDWAHWNFCLSS*LCHTLL Trigger: AAGCAGGGTGTGGCAGAGGCAGCTGGAAAGACAAAA...GTTCCAATGTGCCCAGTCATGACCTTTTCTCAAAGCTGTACAGTGTGTTTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR TCA 90 bp | TTTGAAACACACTGTACAGCTTTGAGAAAAGGTCATGACTGGGCACATTGGAACACTGTTGTCACTCCATaGACCACTCCTTCCTTAGTT | + |
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Preference number: 4 (lower is better) Translates to: FETHCTALRKGHDWAHWNTVVTP*TTPSLV Trigger: AACTAAGGAAGGAGTGGTTCATGGAGTGACAACAGT...GTTCCAATGTGCCCAGTCATGACCTTTTCTCAAAGCTGTACAGTGTGTTTCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR GCA 90 bp | TCATTCTTAGACAGAAAGAGTCATTCAGGACACCTAAAACTCTTGGAGCAAATCCCAACATTTGTCACTTaGTCTTTGGTCTTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SFLDRKSHSGHLKLLEQIPTFVT*SLVFSA Trigger: GGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGG...GATTTGCTCCAAGAGTTTTAGGTGTCCTGAATGACTCTTTCTGTCTAAGAATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CAA 90 bp | TTCACTGTAGTGAGAGGGGAGCACCGGGATGCTGAGGGGCAGGTACAGGACGCCGCCACAACTCCCTCCTaGGCCTTTGAAAGTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: FTVVRGEHRDAEGQVQDAATTPS*AFESPF Trigger: GAAAGGACTTTCAAAGGCCAAGGAGGGAGTTGTGGC...GGCGTCCTGTACCTGCCCCTCAGCATCCCGGTGCTCCCCTCTCACTACAGTGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS GCA 90 bp | GGCAGCAGCTATATTCCCAGCTCCCTCCACTGTCTTCTGAGCGACTaGTGTCACACCAGTCACCACTGCTCCTCCAACATTTGTCACTTG | + |
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Preference number: 5 (lower is better) Translates to: GSSYIPSSLHCLLSD*CHTSHHCSSNICHL Trigger: CAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGTGACAGCAGTCGCTCAGAAGACAGTGGAGGGAGCTGGGAATATAGCTGCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CAA 90 bp | ACAGCACACAAGACCCTGCTACCAGGTTTTCACTGTAGTGAGAGGGGAGCACCGAGAGGACTCCCTCTTTaGTCTTTCCAGCTGCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: TAHKTLLPGFHCSERGAPRGLPL*SFQLPL Trigger: CAGAGGCAGCTGGAAAGACAAAAGAGGGAGTCCTCT...CGGTGCTCCCCTCTCACTACAGTGAAAACCTGGTAGCAGGGTCTTGTGTGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CAA 90 bp | ACTGGGCACATTGGAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATAGAGGACTCCCTCTTTaGTCTTTCCAGCTGCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: TGHIGTEHLYAMEEQPADRGLPL*SFQLPL Trigger: CAGAGGCAGCTGGAAAGACAAAAGAGGGAGTCCTCT...ATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTCCAATGTGCCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CAA 90 bp | GAACTGAGCACTTGTACGCCATGGAAGAGCAGCCGGCAGATCTTAGGAGATTGGCCCATCTGGTCCTTCTaGACAAAGCCAGTGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: ELSTCTPWKSSRQILGDWPIWSF*TKPVAA Trigger: TGCTGCCACTGGCTTTGTCAAGAAGGACCAGATGGG...CCAATCTCCTAAGATCTGCCGGCTGCTCTTCCATGGCGTACAAGTGCTCAGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS GCA 90 bp | CATAGTCTTGGTAGCCTTCCTCTGAAGGCATTTCATAAGCCTCACTaGCAGGATCCACAGGCATGTCTTCCAGGATTCCTTCCTGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: HSLGSLPLKAFHKPH*QDPQACLPGFLPVG Trigger: ACCCACAGGAAGGAATCCTGGAAGACATGCCTGTGGATCCTGGCAGTGAGGCTTATGAAATGCCTTCAGAGGAAGGCTACCAAGACTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS CCA 90 bp | TCACACCAGTCACCACTGCTCCTCCAACATTTGTCACTTGCTCTTTaGTCTTCTCAGCCACTGTTGTCACTCCATGAACCACTCCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: SHQSPLLLQHLSLAL*SSQPLLSLHEPLLP Trigger: AGGAAGGAGTGGTTCATGGAGTGACAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS-3UTR CAA 90 bp | TCTAACAATTTAAGTGTGAAGCCACAACAATATCCACAGCACACAAGACCCTGCGCCACAACTCCCTCCTaGGCCTTTGAAAGTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SNNLSVKPQQYPQHTRPCATTPS*AFESPF Trigger: GAAAGGACTTTCAAAGGCCAAGGAGGGAGTTGTGGC...GCAGGGTCTTGTGTGCTGTGGATATTGTTGTGGCTTCACACTTAAATTGTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS CAA 90 bp | CCTTCCTGTGGGTACCCCTCCTCACCCTTGCCCATCTGGTCCTTCTaGACAAAGCCAGTGGCAGCAGCTATATTCCCAGCTCCCTCCACT | + |
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Preference number: 6 (lower is better) Translates to: PSCGYPSSPLPIWSF*TKPVAAAIFPAPST Trigger: AGTGGAGGGAGCTGGGAATATAGCTGCTGCCACTGGCTTTGTCAAGAAGGACCAGATGGGCAAGGGTGAGGAGGGGTACCCACAGGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS CAA 90 bp | GACTGCTGTCACACCAGTCACCACTGCTCCTCCAACATTTGTCACTaGCTCTTTGGTCTTCTCAGCCACTGTTGTCACTCCATGAACCAC | + |
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Preference number: 6 (lower is better) Translates to: DCCHTSHHCSSNICH*LFGLLSHCCHSMNH Trigger: GTGGTTCATGGAGTGACAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGTGACAGCAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS CAA 90 bp | TCTGAGCGACTGCTGTCACACCAGTCACCACTGCTCCTCCAACATTaGTCACTTGCTCTTTGGTCTTCTCAGCCACTGTTGTCACTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SERLLSHQSPLLLQH*SLALWSSQPLLSLH Trigger: ATGGAGTGACAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGTGACAGCAGTCGCTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS GCA 72 bp | GGTAGCCTTCCTCTGAAGGCATTTCATAAGCCTCACTaGCAGGATCCACAGGCATGTCTTCCAGGATTCCTT | + |
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Preference number: 6 (lower is better) Translates to: GSLPLKAFHKPH*QDPQACLPGFL Trigger: AAGGAATCCTGGAAGACATGCCTGTGGATCCTGGCAGTGAGGCTTATGAAATGCCTTCAGAGGAAGGCTACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS CAA 72 bp | CACACCAGTCACCACTGCTCCTCCAACATTTGTCACTaGCTCTTTGGTCTTCTCAGCCACTGTTGTCACTCC | + |
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Preference number: 6 (lower is better) Translates to: HTSHHCSSNICH*LFGLLSHCCHS Trigger: GGAGTGACAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS CAA 72 bp | CTGCTGTCACACCAGTCACCACTGCTCCTCCAACATTaGTCACTTGCTCTTTGGTCTTCTCAGCCACTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LLSHQSPLLLQH*SLALWSSQPLL Trigger: CAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGTGACAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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| CDS GCA 72 bp | ACACCAGTCACCACTGCTCCTCCAACATTTGTCACTTaGTCTTTGGTCTTCTCAGCCACTGTTGTCACTCCA | + |
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Preference number: 6 (lower is better) Translates to: TPVTTAPPTFVT*SLVFSATVVTP Trigger: TGGAGTGACAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTGGTGACTGGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114268.5 ENSMUST00000163779.8 |
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