Pregenerated sensors for SNAPIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001018Ensembl transcript IDs: ENSMUST00000149884.2, ENSMUST00000184877.8, ENSMUST00000185005.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACGGGCCCGTGCTTATTTGCTTGGAGAACCAGGAGGGTAAACTCCTaGATCCAGCATAGCTCTCCTGCGAGCTGTTTCCTTGGCCACGCT | + |
|
Preference number: 1 (lower is better) Translates to: TGPCLFAWRTRRVNS*IQHSSPASCFLGHA Trigger: AGCGTGGCCAAGGAAACAGCTCGCAGGAGAGCTATGCTGGATTCAGGAGTTTACCCTCCTGGTTCTCCAAGCAAATAAGCACGGGCCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 90 bp | ATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTaGGTTCCCCTGGAGCTGGAGTTAGAGGCTGCTGTGAGTCACCAT | + |
|
Preference number: 1 (lower is better) Translates to: IICVCVLGQKARQGH*VPLELELEAAVSHH Trigger: ATGGTGACTCACAGCAGCCTCTAACTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR GCA 90 bp | AGCTGTCAAGGCTCTGCCTTGACCTTGGATCCTCGCTATCTGGCATaGTCTCCTTGGGTAGCAATGAAGGCAACAGTTGCGAAACTTGTT | + |
|
Preference number: 1 (lower is better) Translates to: SCQGSALTLDPRYLA*SPWVAMKATVAKLV Trigger: AACAAGTTTCGCAACTGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGTCAAGGCAGAGCCTTGACAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 90 bp | GGCTCTGCCTTGACCTTGGATCCTCGCTATCTGGCATGCTCTCCTTaGGTAGCAATGAAGGCAACAGTTGCGAAACTTGTTAATAGGAGT | + |
|
Preference number: 1 (lower is better) Translates to: GSALTLDPRYLACSP*VAMKATVAKLVNRS Trigger: ACTCCTATTAACAAGTTTCGCAACTGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGTCAAGGCAGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 90 bp | GAATCCAGCATAGCTCTCCTGCGAGCTGTTTCCTTGGCCACGCTGTaGTTTAACCGCCTTAGTCGTTCCTGTGCATTCTGTAAAATATTG | + |
|
Preference number: 1 (lower is better) Translates to: ESSIALLRAVSLATL*FNRLSRSCAFCKIL Trigger: CAATATTTTACAGAATGCACAGGAACGACTAAGGCGGTTAAACCACAGCGTGGCCAAGGAAACAGCTCGCAGGAGAGCTATGCTGGATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 90 bp | CTGCCCAGCCCCAGTAATAGGAGTAACAGGATGGTTAACACTGGCTaGCTAAGCCTGGAAAGGATGGCGCTTAAATATGTAACTTTTAAA | + |
|
Preference number: 1 (lower is better) Translates to: LPSPSNRSNRMVNTG*LSLERMALKYVTFK Trigger: TTTAAAAGTTACATATTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACTCCTATTACTGGGGCTGGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGCTGGAGTTAGAGGCTGCTGTGCCAGACAAGGGCATTaGGTTCCCCTGGAGCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: KGQTRALGSPGAGVRGCCARQGH*VPLELE Trigger: CTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGC...ACAGCAGCCTCTAACTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR GCA 90 bp | ATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGCTGGAGTTAGAGGCTaGTGTGAGTCACCATGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: MCVCAGPKGQTRALGSPGAGVRG*CESPCG Trigger: CCCACATGGTGACTCACAGCAGCCTCTAACTCCAGC...TCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | TGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGCTGGAGCTGGCATGCTCTCCTTaGGTAGCAATGAAGGCAACA | + |
|
Preference number: 2 (lower is better) Translates to: CVLGQKARQGHWVPLELELACSP*VAMKAT Trigger: TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAG...CTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | TCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGGCCAGACAAGGGCATTaGGTTCCCCTGGAGCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: SASYVCVCWAKRPDKGIGARQGH*VPLELE Trigger: CTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGC...CCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 90 bp | CATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATaGGGTTCCCCTGGAGCTGGAGTTAGAGGCTGCTGTGAGTCACCA | + |
|
Preference number: 2 (lower is better) Translates to: HHMCVCAGPKGQTRA*GSPGAGVRGCCESP Trigger: TGGTGACTCACAGCAGCCTCTAACTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | GCATTGGGTTCCCCTGGAGCTGGAGTTAGAGGCTGCTGTGAGTCACCATGTGGGATGGTTAACACTGGCTaGCTAAGCCTGGAAAGGATG | + |
|
Preference number: 2 (lower is better) Translates to: ALGSPGAGVRGCCESPCGMVNTG*LSLERM Trigger: CATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCAT...CCCACATGGTGACTCACAGCAGCCTCTAACTCCAGCTCCAGGGGAACCCAATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR TCA 90 bp | ACCTTGGATCCTCGCTATCTGGCATGCTCTCCTTGGGTAGCAATGAAGGCAACAGCAAGAGGACATGTTTaGGGCCAGCCGGGACTACAT | + |
|
Preference number: 2 (lower is better) Translates to: TLDPRYLACSPWVAMKATARGHV*GQPGLH Trigger: ATGTAGTCCCGGCTGGCCTCAAACATGTCCTCTTGC...TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR TCA 90 bp | AGGAGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTGCAAGAGGACATGTTTaGGGCCAGCCGGGACTACAT | + |
|
Preference number: 2 (lower is better) Translates to: RSNRMVNTGWLSLERMALARGHV*GQPGLH Trigger: ATGTAGTCCCGGCTGGCCTCAAACATGTCCTCTTGC...AAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR TCA 90 bp | TGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGCTGGAGTCTGTAAAATATTGTTaGCCAAGACAACTCGTCGCC | + |
|
Preference number: 2 (lower is better) Translates to: CVLGQKARQGHWVPLELESVKYC*PRQLVA Trigger: GGCGACGAGTTGTCTTGGTCAACAATATTTTACAGA...CTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR GCA 90 bp | AGGAGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTGCTGGAGTTAGAGGCTaGTGTGAGTCACCATGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: RSNRMVNTGWLSLERMALAGVRG*CESPCG Trigger: CCCACATGGTGACTCACAGCAGCCTCTAACTCCAGC...AAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR GCA 90 bp | AGGAAACTGCCCAGCCCCAGTAATAGGAGTAACAGGATGGTTAACACTGGCTGGGGGCCCGTGCTTATTTaGTTGGAGAACCAGGAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: RKLPSPSNRSNRMVNTGWGPVLI*LENQEG Trigger: ACCCTCCTGGTTCTCCAAGCAAATAAGCACGGGCCC...CCAGCCAGTGTTAACCATCCTGTTACTCCTATTACTGGGGCTGGGCAGTTTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 90 bp | TCGCAAAAGCTTAGGACTCTTAGCTGTCAAGGCTCTGCCTTGACCTaGGATCCTCGCTATCTGGCATGCTCTCCTTGGGTAGCAATGAAG | + |
|
Preference number: 2 (lower is better) Translates to: SQKLRTLSCQGSALT*DPRYLACSPWVAMK Trigger: CTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGTCAAGGCAGAGCCTTGACAGCTAAGAGTCCTAAGCTTTTGCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR TCA 90 bp | AGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAATCCAGGGCCACTTTCTaGTCCTCATTGATCCGGCAC | + |
|
Preference number: 2 (lower is better) Translates to: SNRMVNTGWLSLERMALKSRATF*SSLIRH Trigger: GTGCCGGATCAATGAGGATCAGAAAGTGGCCCTGGA...TTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184877.8 |
||
| 3UTR-3UTR GCA 90 bp | ATATATCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCAGGGCCCGTGCTTATTTaGTTGGAGAACCAGGAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: IYLHHMCVCAGPKGQTRAGPVLI*LENQEG Trigger: ACCCTCCTGGTTCTCCAAGCAAATAAGCACGGGCCC...TGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGATATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR GCA 90 bp | AGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAACAGGTCACGGGCCCGTaGTTATTTGCTTGGAGAACC | + |
|
Preference number: 2 (lower is better) Translates to: SNRMVNTGWLSLERMALKQVTGP*LFAWRT Trigger: GGTTCTCCAAGCAAATAAGCACGGGCCCGTGACCTG...TTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR TCA 90 bp | ATATATATCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGGTCAAGGCTCTGCCTTaGCCTTGGATCCTCGCTATC | + |
|
Preference number: 2 (lower is better) Translates to: IYICIICVCVLGQKARQGVKALP*PWILAI Trigger: GATAGCGAGGATCCAAGGTCAAGGCAGAGCCTTGAC...CCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGATATATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | TGTTTTGCCTGCATATATATCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTaGGTTCCCCTGGAGCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: CFACIYICIICVCVLGQKARQGH*VPLELE Trigger: CTCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGC...CTTTTGGCCCAGCACACACACACATATGATGCAGATATATATGCAGGCAAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | AGGAGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTCCGTGCTTATTTGCTTaGAGAACCAGGAGGGTAAAC | + |
|
Preference number: 2 (lower is better) Translates to: RSNRMVNTGWLSLERMALPCLFA*RTRRVN Trigger: GTTTACCCTCCTGGTTCTCCAAGCAAATAAGCACGG...AAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | TATATCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATGCACTGGACGCCATCTaGAAGAATCACCAGTGTTCT | + |
|
Preference number: 2 (lower is better) Translates to: YICIICVCVLGQKARQGHALDAI*KNHQCS Trigger: AGAACACTGGTGATTCTTCCAGATGGCGTCCAGTGC...ATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGATATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | AGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAATATGTACTGGCATGCTCTCCTTaGGTAGCAATGAAGGCAACA | + |
|
Preference number: 2 (lower is better) Translates to: RMVNTGWLSLERMALKYVLACSP*VAMKAT Trigger: TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAG...TACATATTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAAATGGTTAACACTGGCTaGCTAAGCCTGGAAAGGATG | + |
|
Preference number: 2 (lower is better) Translates to: SNRMVNTGWLSLERMALKMVNTG*LSLERM Trigger: CATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCAT...TTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGATGATCCTGGAAAGGTTATTACCTTCTGAGAGGAACTGTGGTGAAGCAGAGTGCGAGCTGTTTCCTTaGCCACGCTGTGGTTTAACC | + |
|
Preference number: 2 (lower is better) Translates to: KMILERLLPSERNCGEAECELFP*PRCGLT Trigger: GGTTAAACCACAGCGTGGCCAAGGAAACAGCTCGCA...CTCTGCTTCACCACAGTTCCTCTCAGAAGGTAATAACCTTTCCAGGATCATCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 90 bp | CTGTGGTTTAACCGCCTTAGTCGTTCCTGTGCATTCTGTAAAATATaGTTGACCAAGACAACTCGTCGCCTGGCATTAAGCAGCTTCTTA | + |
|
Preference number: 2 (lower is better) Translates to: LWFNRLSRSCAFCKI*LTKTTRRLALSSFL Trigger: TAAGAAGCTGCTTAATGCCAGGCGACGAGTTGTCTTGGTCAACAATATTTTACAGAATGCACAGGAACGACTAAGGCGGTTAAACCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR TCA 90 bp | AGCCAGGGTGGCCAAGAGGATAAATTATTTACCTTGACTTTACCTAAGTCCTCATTGAGCCCGGCACTCTaGCACATGCCTATTATAATC | + |
|
Preference number: 2 (lower is better) Translates to: SQGGQEDKLFTLTLPKSSLSPAL*HMPIII Trigger: GATTATAATAGGCATGTGTCAGAGTGCCGGGCTCAA...TGAGGACTTAGGTAAAGTCAAGGTAAATAATTTATCCTCTTGGCCACCCTGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | GAATCTTCTCGTGTCTACCAGACAAAGCCGTTGGAGAATTGTACTTGTATACTCAGGCTCTTTCTTGGATaGACAAGCTGTGATGGAGGT | + |
|
Preference number: 2 (lower is better) Translates to: ESSRVYQTKPLENCTCILRLFLG*TSCDGG Trigger: ACCTCCATCACAGCTTGTCCATCCAAGAAAGAGCCT...GAGTATACAAGTACAATTCTCCAACGGCTTTGTCTGGTAGACACGAGAAGATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 90 bp | TGGTTTAACCGCCTTAGTCGTTCCTGTGCATTCTGTAAAATATTGTaGACCAAGACAACTCGTCGCCTGGCATTAAGCAGCTTCTTAACA | + |
|
Preference number: 2 (lower is better) Translates to: WFNRLSRSCAFCKIL*TKTTRRLALSSFLT Trigger: TGTTAAGAAGCTGCTTAATGCCAGGCGACGAGTTGTCTTGGTCAACAATATTTTACAGAATGCACAGGAACGACTAAGGCGGTTAAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR GCA 90 bp | AACCTAAACATTATAGAGTGTAAGATGATCCTGGAAAGGTTATTACCTTCTGAGCAGGTCACGGGCCCGTaGTTATTTGCTTGGAGAACC | + |
|
Preference number: 2 (lower is better) Translates to: NLNIIECKMILERLLPSEQVTGP*LFAWRT Trigger: GGTTCTCCAAGCAAATAAGCACGGGCCCGTGACCTG...CTCAGAAGGTAATAACCTTTCCAGGATCATCTTACACTCTATAATGTTTAGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CCA 90 bp | TGTCTCAAGATTAACAAAACCCAAAAGGTAGAGGCTCTTTCTTGGATGGACAAGAGGCTCTTTCTTGGATaGACAAGCTGTGATGGAGGT | + |
|
Preference number: 2 (lower is better) Translates to: CLKINKTQKVEALSWMDKRLFLG*TSCDGG Trigger: ACCTCCATCACAGCTTGTCCATCCAAGAAAGAGCCT...CTTGTCCATCCAAGAAAGAGCCTCTACCTTTTGGGTTTTGTTAATCTTGAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR GCA 90 bp | AGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAAGATGGTTGTTTTGCCTaGATATATATCTGCATCATA | + |
|
Preference number: 2 (lower is better) Translates to: SNRMVNTGWLSLERMALKDGCFA*IYICII Trigger: TATGATGCAGATATATATGCAGGCAAAACAACCATC...TTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGCTGGCCAGACAAGGGCATaGGGTTCCCCTGGAGCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: CVCAGPKGQTRALGSPGAGQTRA*GSPGAG Trigger: TCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCC...AGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | ATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGGCTCTGCCTTGACCTaGGATCCTCGCTATCTGGCA | + |
|
Preference number: 3 (lower is better) Translates to: MCVCAGPKGQTRALGSPGGSALT*DPRYLA Trigger: TGCCAGATAGCGAGGATCCAAGGTCAAGGCAGAGCC...TCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | ATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCGGCCAGACAAGGGCATaGGGTTCCCCTGGAGCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: IICVCVLGQKARQGHWVPGQTRA*GSPGAG Trigger: TCCAGCTCCAGGGGAACCCAATGCCCTTGTCTGGCC...GGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGAGCTCCCGTGCTTATTTGCTaGGAGAACCAGGAGGGTAAA | + |
|
Preference number: 3 (lower is better) Translates to: CVCAGPKGQTRALGSPGAPVLIC*ENQEGK Trigger: TTTACCCTCCTGGTTCTCCAAGCAAATAAGCACGGG...AGCTCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR GCA 72 bp | GGCTCTGCCTTGACCTTGGATCCTCGCTATCTGGCATaGTCTCCTTGGGTAGCAATGAAGGCAACAGTTGCG | + |
|
Preference number: 3 (lower is better) Translates to: GSALTLDPRYLA*SPWVAMKATVA Trigger: CGCAACTGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGTCAAGGCAGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 72 bp | GAGGCTGCTGTGAGTCACCATGTGGGCGCTAAGCACTaGACGCCATCTGGAAGAATCACCAGTGTTCTTAAC | + |
|
Preference number: 3 (lower is better) Translates to: EAAVSHHVGAKH*TPSGRITSVLN Trigger: GTTAAGAACACTGGTGATTCTTCCAGATGGCGTCCAGTGCTTAGCGCCCACATGGTGACTCACAGCAGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | ATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCTCTGGCATGCTCTCCTaGGGTAGCAATGAAGGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: IICVCVLGQKARQGHWVPSGMLS*GSNEGN Trigger: GTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGA...GGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR TCA 72 bp | CCCAGCATTCAGGAGGCTAAGGCAAGAGGACATGTTTaGGGCCAGCCGGGACTACATACTGAGATCTTGTCT | + |
|
Preference number: 3 (lower is better) Translates to: PSIQEAKARGHV*GQPGLHTEILS Trigger: AGACAAGATCTCAGTATGTAGTCCCGGCTGGCCTCAAACATGTCCTCTTGCCTTAGCCTCCTGAATGCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 72 bp | ATAGCTCTCCTGCGAGCTGTTTCCTTGGCCACGCTGTaGTTTAACCGCCTTAGTCGTTCCTGTGCATTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: IALLRAVSLATL*FNRLSRSCAFC Trigger: ACAGAATGCACAGGAACGACTAAGGCGGTTAAACCACAGCGTGGCCAAGGAAACAGCTCGCAGGAGAGCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCTTGGATCCTCGCTATCTGGCATGCTCTCCTTGGGTAGCAATGAAGGCAACATCTGGCATGCTCTCCTaGGGTAGCAATGAAGGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: TLDPRYLACSPWVAMKATSGMLS*GSNEGN Trigger: GTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGA...TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCTTGGATCCTCGCTATCTGGCATGCTCTCCTTGGGTAGCAATGAAGGCAACACCCGTGCTTATTTGCTaGGAGAACCAGGAGGGTAAA | + |
|
Preference number: 3 (lower is better) Translates to: TLDPRYLACSPWVAMKATPVLIC*ENQEGK Trigger: TTTACCCTCCTGGTTCTCCAAGCAAATAAGCACGGG...TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 72 bp | CCTGCATATATATCTGCATCATATGTGTGTGTGTGCTaGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: PAYISASYVCVC*AKRPDKGIGFP Trigger: GGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGATATATATGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR GCA 72 bp | GTACTTGTATACTCAGGTCACGGGCCCGTGCTTATTTaGTTGGAGAACCAGGAGGGTAAACTCCTGAATCCA | + |
|
Preference number: 3 (lower is better) Translates to: VLVYSGHGPVLI*LENQEGKLLNP Trigger: TGGATTCAGGAGTTTACCCTCCTGGTTCTCCAAGCAAATAAGCACGGGCCCGTGACCTGAGTATACAAGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CCA 72 bp | TCCTGGAATCTTCTCGTGTCTACCAGACAAAGCCGTTaGAGAATTGTACTTGTATACTCAGGTCACGGGCCC | + |
|
Preference number: 3 (lower is better) Translates to: SWNLLVSTRQSR*RIVLVYSGHGP Trigger: GGGCCCGTGACCTGAGTATACAAGTACAATTCTCCAACGGCTTTGTCTGGTAGACACGAGAAGATTCCAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAATATGTATCTGGCATGCTCTCCTaGGGTAGCAATGAAGGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: RMVNTGWLSLERMALKYVSGMLS*GSNEGN Trigger: GTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGA...TACATATTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR TCA 72 bp | TGCTTATTTGCTTGGAGAACCAGGAGGGTAAACTCCTaGATCCAGCATAGCTCTCCTGCGAGCTGTTTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: CLFAWRTRRVNS*IQHSSPASCFL Trigger: AAGGAAACAGCTCGCAGGAGAGCTATGCTGGATTCAGGAGTTTACCCTCCTGGTTCTCCAAGCAAATAAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | AGCCAGGGTGGCCAAGAGGATAAATTATTTACCTTGACTTTACCTAAGTCCTCATGTCAAGGCTCTGCCTaGACCTTGGATCCTCGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: SQGGQEDKLFTLTLPKSSCQGSA*TLDPRY Trigger: ATAGCGAGGATCCAAGGTCAAGGCAGAGCCTTGACA...TGAGGACTTAGGTAAAGTCAAGGTAAATAATTTATCCTCTTGGCCACCCTGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR TCA 72 bp | AATGGCAGAGTCCAGCATTCCCTTCTCTTGGAAGCTTaGTCACCTCACATTCTCATGTCTCAAAATAGGCCC | + |
|
Preference number: 3 (lower is better) Translates to: NGRVQHSLLLEA*SPHILMSQNRP Trigger: GGGCCTATTTTGAGACATGAGAATGTGAGGTGATCAAGCTTCCAAGAGAAGGGAATGCTGGACTCTGCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| 3UTR CCA 72 bp | CCCAGTAATAGGAGTAACAGGATGGTTAACACTGGCTaGCTAAGCCTGGAAAGGATGGCGCTTAAATATGTA | + |
|
Preference number: 3 (lower is better) Translates to: PSNRSNRMVNTG*LSLERMALKYV Trigger: TACATATTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACTCCTATTACTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | AGTAACAGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAAGCATTCTGTAAAATATaGTTGACCAAGACAACTCGT | + |
|
Preference number: 3 (lower is better) Translates to: SNRMVNTGWLSLERMALKAFCKI*LTKTTR Trigger: ACGAGTTGTCTTGGTCAACAATATTTTACAGAATGC...TTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCTGTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR GCA 72 bp | AGTTGTAAACAAAGTGGAGTTACAGGTAAAGGAAACTaGCCAGCCCCAGTAATAGGAGTAACAGGATGGTTA | + |
|
Preference number: 3 (lower is better) Translates to: SCKQSGVTGKGN*PAPVIGVTGWL Trigger: TAACCATCCTGTTACTCCTATTACTGGGGCTGGGCAGTTTCCTTTACCTGTAACTCCACTTTGTTTACAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR-3UTR CAA 90 bp | AACCTAAACATTATAGAGTGTAAGATGATCCTGGAAAGGTTATTACCTTCTGAGGCATTCTGTAAAATATaGTTGACCAAGACAACTCGT | + |
|
Preference number: 3 (lower is better) Translates to: NLNIIECKMILERLLPSEAFCKI*LTKTTR Trigger: ACGAGTTGTCTTGGTCAACAATATTTTACAGAATGC...CTCAGAAGGTAATAACCTTTCCAGGATCATCTTACACTCTATAATGTTTAGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| CDS-3UTR CCA 90 bp | GCATTGGGTTCCCCTGGAGCTGGAGTTAGAGGCTGCTGTGAGTCACCATGTGGGAGAGGTCGCGGCCTGTaGGCCCCGCCACTGGGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: ALGSPGAGVRGCCESPCGRGRGL*APPLGS Trigger: GGACCCCAGTGGCGGGGCCCACAGGCCGCGACCTCT...CCCACATGGTGACTCACAGCAGCCTCTAACTCCAGCTCCAGGGGAACCCAATGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| CDS-3UTR CCA 90 bp | ATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCAGAGGTCGCGGCCTGTaGGCCCCGCCACTGGGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: IICVCVLGQKARQGHWVPRGRGL*APPLGS Trigger: GGACCCCAGTGGCGGGGCCCACAGGCCGCGACCTCT...GGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| CDS-3UTR TCA 90 bp | ATATATCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCACTGACCGCGTGCACGTaGGAGTCGAGCTGCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: IYLHHMCVCAGPKGQTRALTACT*ESSCCT Trigger: GGTGCAGCAGCTCGACTCTCACGTGCACGCGGTCAG...TGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGATATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000149884.2 ENSMUST00000185005.2 |
||
| CDS-3UTR CCA 90 bp | ATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTTCCCCTGGATGCGAGCTGTTTCCTTaGCCACGCTGTGGTTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: MCVCAGPKGQTRALGSPGCELFP*PRCGLT Trigger: GGTTAAACCACAGCGTGGCCAAGGAAACAGCTCGCA...TCCAGGGGAACCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| 3UTR CAA 72 bp | CCTGAATCCAGCATAGCTCTCCTGCGAGCTGTTTCCTaGGCCACGCTGTGGTTTAACCGCCTTAGTCGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PESSIALLRAVS*ATLWFNRLSRS Trigger: GGAACGACTAAGGCGGTTAAACCACAGCGTGGCCAAGGAAACAGCTCGCAGGAGAGCTATGCTGGATTCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| CDS-3UTR TCA 90 bp | ATATATATCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCTGACCGCGTGCACGTaGGAGTCGAGCTGCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: IYICIICVCVLGQKARQGLTACT*ESSCCT Trigger: GGTGCAGCAGCTCGACTCTCACGTGCACGCGGTCAG...CCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGATATATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000149884.2 ENSMUST00000185005.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGAGGGGGAGAAATAGGAGTATACTTTCTCACTAAATCTGGTGTTTTCTCAAGAGGTCGCGGCCTGTaGGCCCCGCCACTGGGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SRGGEIGVYFLTKSGVFSRGRGL*APPLGS Trigger: GGACCCCAGTGGCGGGGCCCACAGGCCGCGACCTCT...TGAGAAAACACCAGATTTAGTGAGAAAGTATACTCCTATTTCTCCCCCTCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| CDS-3UTR CCA 90 bp | ACCTTGGATCCTCGCTATCTGGCATGCTCTCCTTGGGTAGCAATGAAGGCAACATCCCGGAGCTCTACTTaGCTTTCTCTGACCGCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: TLDPRYLACSPWVAMKATSRSST*LSLTAC Trigger: GCACGCGGTCAGAGAAAGCCAAGTAGAGCTCCGGGA...TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| CDS-3UTR TCA 90 bp | AGGATGGTTAACACTGGCTGGCTAAGCCTGGAAAGGATGGCGCTTAAATATGTATCCAGGGCCACTTTCTaGTCCTCATTGATCCGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RMVNTGWLSLERMALKYVSRATF*SSLIRH Trigger: GTGCCGGATCAATGAGGATCAGAAAGTGGCCCTGGA...TACATATTTAAGCGCCATCCTTTCCAGGCTTAGCCAGCCAGTGTTAACCATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| CDS-3UTR TCA 90 bp | TCTGCATCATATGTGTGTGTGTGCTGGGCCAAAAGGCCAGACAAGGGCATTGGGTCTGTAAAATATTGTTaGCCAAGACAACTCGTCGCC | + |
|
Preference number: 4 (lower is better) Translates to: SASYVCVCWAKRPDKGIGSVKYC*PRQLVA Trigger: GGCGACGAGTTGTCTTGGTCAACAATATTTTACAGA...CCCAATGCCCTTGTCTGGCCTTTTGGCCCAGCACACACACACATATGATGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| CDS-3UTR TCA 90 bp | AGCAGAGGGGGAGAAATAGGAGTATACTTTCTCACTAAATCTGGTGTTTTCTCATTTCTCGCGTGCACGTaGGAGTCGAGCTGCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: SRGGEIGVYFLTKSGVFSFLACT*ESSCCT Trigger: GGTGCAGCAGCTCGACTCTCACGTGCACGCGAGAAA...TGAGAAAACACCAGATTTAGTGAGAAAGTATACTCCTATTTCTCCCCCTCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184877.8 |
||
| 3UTR CAA 72 bp | TTCCTGGAATCTTCTCGTGTCTACCAGACAAAGCCGTaGGAGAATTGTACTTGTATACTCAGGTCACGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: FLESSRVYQTKP*ENCTCILRSRA Trigger: GGCCCGTGACCTGAGTATACAAGTACAATTCTCCAACGGCTTTGTCTGGTAGACACGAGAAGATTCCAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 72 bp | ATCTTCTCGTGTCTACCAGACAAAGCCGTTGGAGAATaGTACTTGTATACTCAGGTCACGGGCCCGTGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: IFSCLPDKAVGE*YLYTQVTGPCL Trigger: TAAGCACGGGCCCGTGACCTGAGTATACAAGTACAATTCTCCAACGGCTTTGTCTGGTAGACACGAGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 72 bp | AACCGCCTTAGTCGTTCCTGTGCATTCTGTAAAATATaGTTGACCAAGACAACTCGTCGCCTGGCATTAAGC | + |
|
Preference number: 4 (lower is better) Translates to: NRLSRSCAFCKI*LTKTTRRLALS Trigger: GCTTAATGCCAGGCGACGAGTTGTCTTGGTCAACAATATTTTACAGAATGCACAGGAACGACTAAGGCGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| 3UTR CAA 72 bp | TCAAGCCAGGGTGGCCAAGAGGATAAATTATTTACCTaGACTTTACCTAAGTCCTCAGTTGTAAACAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: SSQGGQEDKLFT*TLPKSSVVNKV Trigger: CACTTTGTTTACAACTGAGGACTTAGGTAAAGTCAAGGTAAATAATTTATCCTCTTGGCCACCCTGGCTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000149884.2 ENSMUST00000184877.8 ENSMUST00000185005.2 |
||
| CDS-3UTR CAA 90 bp | CTACAGAGACTTTCCTGGAATCTTCTCGTGTCTACCAGACAAAGCCGTTGGAGATTCCCGGAGCTCTACTaGGCTTTCTCTGACCGCGTG | + |
|
Preference number: 5 (lower is better) Translates to: LQRLSWNLLVSTRQSRWRFPELY*AFSDRV Trigger: CACGCGGTCAGAGAAAGCCAAGTAGAGCTCCGGGAA...TCTCCAACGGCTTTGTCTGGTAGACACGAGAAGATTCCAGGAAAGTCTCTGTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| CDS-3UTR CAA 90 bp | ACCTTGGATCCTCGCTATCTGGCATGCTCTCCTTGGGTAGCAATGAAGGCAACAGCATTCTGTAAAATATaGTTGACCAAGACAACTCGT | + |
|
Preference number: 5 (lower is better) Translates to: TLDPRYLACSPWVAMKATAFCKI*LTKTTR Trigger: ACGAGTTGTCTTGGTCAACAATATTTTACAGAATGC...TGTTGCCTTCATTGCTACCCAAGGAGAGCATGCCAGATAGCGAGGATCCAAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| CDS-3UTR CAA 90 bp | GAATCTTCTCGTGTCTACCAGACAAAGCCGTTGGAGAATTGTACTTGTATACTCAGTTCTGTAGCTAGGTaGTCAATTTGTTCCCGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: ESSRVYQTKPLENCTCILSSVAR*SICSRS Trigger: GCTCCGGGAACAAATTGACAACCTAGCTACAGAACT...GAGTATACAAGTACAATTCTCCAACGGCTTTGTCTGGTAGACACGAGAAGATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||
| CDS TCA 72 bp | CGGAGCTCTACTTGGCTTTCTCTGACCGCGTGCACGTaGGAGTCGAGCTGCTGCACCGCGGGTCGCAGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: RSSTWLSLTACT*ESSCCTAGRRN Trigger: GTTCCTGCGACCCGCGGTGCAGCAGCTCGACTCTCACGTGCACGCGGTCAGAGAAAGCCAAGTAGAGCTCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149884.2 |
||