Pregenerated sensors for SNAPC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032398Ensembl transcript IDs: ENSMUST00000034965.8
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCAGTGTGCTTCTGGGATCTGTTGTTCTTCCTATCCCCAGTGCTaGGGTTACAGGCATGTGACACTCTATGTTTTTACACAGATTCTG | + |
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Preference number: 1 (lower is better) Translates to: GQCASGICCSSYPQC*GYRHVTLYVFTQIL Trigger: CAGAATCTGTGTAAAAACATAGAGTGTCACATGCCTGTAACCCCAGCACTGGGGATAGGAAGAACAACAGATCCCAGAAGCACACTGGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 90 bp | TGTGGACCGTCACACCTGACATTCTGCCTCTCATCACATCCCATGTaGCTGCCCCTGGTAATGACTGAAATTAGGTCAATTTGTATAGTG | + |
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Preference number: 1 (lower is better) Translates to: CGPSHLTFCLSSHPM*LPLVMTEIRSICIV Trigger: CACTATACAAATTGACCTAATTTCAGTCATTACCAGGGGCAGTCACATGGGATGTGATGAGAGGCAGAATGTCAGGTGTGACGGTCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CCA 90 bp | ATGGTAAGACCTTTCATTGTGCTTTGTTTTCATTCTCCTCCAGGCTaGCTTCACAGCAGATGTCAATCTCTCTTGCTAGAGCATCCCAAA | + |
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Preference number: 1 (lower is better) Translates to: MVRPFIVLCFHSPPG*LHSRCQSLLLEHPK Trigger: TTTGGGATGCTCTAGCAAGAGAGATTGACATCTGCTGTGAAGCCAGCCTGGAGGAGAATGAAAACAAAGCACAATGAAAGGTCTTACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 90 bp | ATTTTTGCAGCTTGCTATTTAATCCCTTTTCTTGTGTGCTGGGATTaGGATGTGCTGGGCCTCTATGCCATTATAACTGTTCTCTTCAGA | + |
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Preference number: 1 (lower is better) Translates to: IFAACYLIPFLVCWD*DVLGLYAIITVLFR Trigger: TCTGAAGAGAACAGTTATAATGGCATAGAGGCCCAGCACATCTCAATCCCAGCACACAAGAAAAGGGATTAAATAGCAAGCTGCAAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 90 bp | CTCCAAACTCAGCTCTTCATATTTGAATATAGATACTTTATGGGCTaGGCCTCTTCCATTCATAAGTTTATCTTTCACATAGGCCCTGCA | + |
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Preference number: 1 (lower is better) Translates to: LQTQLFIFEYRYFMG*ASSIHKFIFHIGPA Trigger: TGCAGGGCCTATGTGAAAGATAAACTTATGAATGGAAGAGGCTCAGCCCATAAAGTATCTATATTCAAATATGAAGAGCTGAGTTTGGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CAA 90 bp | CTGTTCTCTTCAGACAGGTCTCTGAGTGAATCAGAACTCACTGGTTaGGCTAGACAGGCTGGCCAGTGTGCTTCTGGGATCTGTTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: LFSSDRSLSESELTG*ARQAGQCASGICCS Trigger: AGAACAACAGATCCCAGAAGCACACTGGCCAGCCTGTCTAGCCAAACCAGTGAGTTCTGATTCACTCAGAGACCTGTCTGAAGAGAACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR-3UTR CCA 90 bp | GTCCTGGCTGTCCTGGAACTTGCTGTGTGGACCGTCACACCTGACATTCTGCCTTGTAAATGCCAAAGTTaGCTAAAACTCTGTATGATC | + |
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Preference number: 2 (lower is better) Translates to: VLAVLELAVWTVTPDILPCKCQS*LKLCMI Trigger: GATCATACAGAGTTTTAGCCAACTTTGGCATTTACA...AGGCAGAATGTCAGGTGTGACGGTCCACACAGCAAGTTCCAGGACAGCCAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CAA 90 bp | GCTTCACAGCAGATGTCAATCTCTCTTGCTAGAGCATCCCAAAGCTaGGGAATGCAGGTATGTAAATGCCAAAGTTGGCTAAAACTCTGT | + |
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Preference number: 2 (lower is better) Translates to: ASQQMSISLARASQS*GMQVCKCQSWLKLC Trigger: ACAGAGTTTTAGCCAACTTTGGCATTTACATACCTGCATTCCCAAGCTTTGGGATGCTCTAGCAAGAGAGATTGACATCTGCTGTGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CAA 90 bp | ATGTTTTTACACAGATTCTGGGGCTCCAAACTCAGCTCTTCATATTaGAATATAGATACTTTATGGGCTGAGCCTCTTCCATTCATAAGT | + |
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Preference number: 2 (lower is better) Translates to: MFLHRFWGSKLSSSY*NIDTLWAEPLPFIS Trigger: ACTTATGAATGGAAGAGGCTCAGCCCATAAAGTATCTATATTCAAATATGAAGAGCTGAGTTTGGAGCCCCAGAATCTGTGTAAAAACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR-3UTR CAA 90 bp | GTCCTGGCTGTCCTGGAACTTGCTGTGTGGACCGTCACACCTGACATTCTGCCTTCTTGTGTGCTGGGATaGAGATGTGCTGGGCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: VLAVLELAVWTVTPDILPSCVLG*RCAGPL Trigger: TAGAGGCCCAGCACATCTCAATCCCAGCACACAAGA...AGGCAGAATGTCAGGTGTGACGGTCCACACAGCAAGTTCCAGGACAGCCAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR-3UTR CAA 90 bp | GTGCTTCTGGGATCTGTTGTTCTTCCTATCCCCAGTGCTGGGGTTACAGGCATGCACCCAAGACTTAGTTaGTATAACTACCCTGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: VLLGSVVLPIPSAGVTGMHPRLS*YNYPAL Trigger: AAGGGCAGGGTAGTTATACAAACTAAGTCTTGGGTG...CATGCCTGTAACCCCAGCACTGGGGATAGGAAGAACAACAGATCCCAGAAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR GCA 72 bp | TGTGCTTCTGGGATCTGTTGTTCTTCCTATCCCCAGTaGTGGGGTTACAGGCATGTGACACTCTATGTTTTT | + |
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Preference number: 3 (lower is better) Translates to: CASGICCSSYPQ*WGYRHVTLYVF Trigger: AAAAACATAGAGTGTCACATGCCTGTAACCCCAGCACTGGGGATAGGAAGAACAACAGATCCCAGAAGCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 72 bp | TCACACCTGACATTCTGCCTCTCATCACATCCCATGTaGCTGCCCCTGGTAATGACTGAAATTAGGTCAATT | + |
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Preference number: 3 (lower is better) Translates to: SHLTFCLSSHPM*LPLVMTEIRSI Trigger: AATTGACCTAATTTCAGTCATTACCAGGGGCAGTCACATGGGATGTGATGAGAGGCAGAATGTCAGGTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 72 bp | CTATGCCATTATAACTGTTCTCTTCAGACAGGTCTCTaGGTGAATCAGAACTCACTGGTTTGGCTAGACAGG | + |
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Preference number: 3 (lower is better) Translates to: LCHYNCSLQTGL*VNQNSLVWLDR Trigger: CCTGTCTAGCCAAACCAGTGAGTTCTGATTCACTCAGAGACCTGTCTGAAGAGAACAGTTATAATGGCATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 72 bp | CTTTCACATAGGCCCTGCAAGATGACTTTGAAGAGATaGAGCACCCAAGACTTAGTTTGTATAACTACCCTG | + |
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Preference number: 3 (lower is better) Translates to: LSHRPCKMTLKR*STQDLVCITTL Trigger: CAGGGTAGTTATACAAACTAAGTCTTGGGTGCTTCATCTCTTCAAAGTCATCTTGCAGGGCCTATGTGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR TCA 72 bp | GCTTGCTATTTAATCCCTTTTCTTGTGTGCTGGGATTaGGATGTGCTGGGCCTCTATGCCATTATAACTGTT | + |
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Preference number: 3 (lower is better) Translates to: ACYLIPFLVCWD*DVLGLYAIITV Trigger: AACAGTTATAATGGCATAGAGGCCCAGCACATCTCAATCCCAGCACACAAGAAAAGGGATTAAATAGCAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR GCA 72 bp | AGAGCATCCCAAAGCTTGGGAATGCAGGTATGTAAATaGCAAAGTTGGCTAAAACTCTGTATGATCTTTTAC | + |
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Preference number: 3 (lower is better) Translates to: RASQSLGMQVCK*QSWLKLCMIFY Trigger: GTAAAAGATCATACAGAGTTTTAGCCAACTTTGGCATTTACATACCTGCATTCCCAAGCTTTGGGATGCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CCA 72 bp | CAAAGCTTGGGAATGCAGGTATGTAAATGCCAAAGTTaGCTAAAACTCTGTATGATCTTTTACATAATGATC | + |
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Preference number: 3 (lower is better) Translates to: QSLGMQVCKCQS*LKLCMIFYIMI Trigger: GATCATTATGTAAAAGATCATACAGAGTTTTAGCCAACTTTGGCATTTACATACCTGCATTCCCAAGCTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR GCA 90 bp | GGTTTGGCTAGACAGGCTGGCCAGTGTGCTTCTGGGATCTGTTGTTCTTCCTATGGGTTTCCTCCTCCTTaGGGAGCTCCTGCAGTCGAC | + |
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Preference number: 4 (lower is better) Translates to: GLARQAGQCASGICCSSYGFPPP*GAPAVD Trigger: GTCGACTGCAGGAGCTCCGCAAGGAGGAGGAAACCC...ATAGGAAGAACAACAGATCCCAGAAGCACACTGGCCAGCCTGTCTAGCCAAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCCAGTGTGCTTCTGGGATCTGTTGTTCTTCCTATCCCCAGTGCTGGGGAATTTATCATGGATTaGAGGGCTAATTCTTCAACC | + |
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Preference number: 4 (lower is better) Translates to: RLASVLLGSVVLPIPSAGEFIMD*RANSST Trigger: GGTTGAAGAATTAGCCCTTCAATCCATGATAAATTC...CCCAGCACTGGGGATAGGAAGAACAACAGATCCCAGAAGCACACTGGCCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR CCA 90 bp | GCTAGAGCATCCCAAAGCTTGGGAATGCAGGTATGTAAATGCCAAAGTTGGCTATTGAGGCGGTTCAGTTaGTCGTGTAGAGCCGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: ARASQSLGMQVCKCQSWLLRRFS*SCRAAF Trigger: AAAGGCGGCTCTACACGACCAACTGAACCGCCTCAA...TAGCCAACTTTGGCATTTACATACCTGCATTCCCAAGCTTTGGGATGCTCTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR TCA 90 bp | TCCAAACTCAGCTCTTCATATTTGAATATAGATACTTTATGGGCTGAGCCTCTTTGTTCAGGTGCAGGCTaGGAAGACAGTGTCTCGGTC | + |
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Preference number: 4 (lower is better) Translates to: SKLSSSYLNIDTLWAEPLCSGAG*EDSVSV Trigger: GACCGAGACACTGTCTTCTCAGCCTGCACCTGAACA...AAGAGGCTCAGCCCATAAAGTATCTATATTCAAATATGAAGAGCTGAGTTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CAA 72 bp | CAGATGTCAATCTCTCTTGCTAGAGCATCCCAAAGCTaGGGAATGCAGGTATGTAAATGCCAAAGTTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: QMSISLARASQS*GMQVCKCQSWL Trigger: TAGCCAACTTTGGCATTTACATACCTGCATTCCCAAGCTTTGGGATGCTCTAGCAAGAGAGATTGACATCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| 3UTR CAA 72 bp | CACAGATTCTGGGGCTCCAAACTCAGCTCTTCATATTaGAATATAGATACTTTATGGGCTGAGCCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: HRFWGSKLSSSY*NIDTLWAEPLP Trigger: TGGAAGAGGCTCAGCCCATAAAGTATCTATATTCAAATATGAAGAGCTGAGTTTGGAGCCCCAGAATCTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR CCA 90 bp | CTCTATGTTTTTACACAGATTCTGGGGCTCCAAACTCAGCTCTTCATATTTGAACTCGAGAATTTATCATaGATTGAAGGGCTAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LYVFTQILGLQTQLFIFELENLS*IEGLIL Trigger: AAGAATTAGCCCTTCAATCCATGATAAATTCTCGAG...TTCAAATATGAAGAGCTGAGTTTGGAGCCCCAGAATCTGTGTAAAAACATAGAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGGCCAGTGTGCTTCTGGGATCTGTTGTTCTTCCTATCCCCAGTGCTGGGGCTAATTCTTCAACCTaGAGGCGGTTCAGTTGGTCG | + |
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Preference number: 5 (lower is better) Translates to: RLASVLLGSVVLPIPSAGANSST*RRFSWS Trigger: CGACCAACTGAACCGCCTCAAGGTTGAAGAATTAGC...CCCAGCACTGGGGATAGGAAGAACAACAGATCCCAGAAGCACACTGGCCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGGCCAGTGTGCTTCTGGGATCTGTTGTTCTTCCTATCCCCAGTGCTGGGTTTATTGTCACTTCGTaGTCTACATGTAGGGACATA | + |
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Preference number: 5 (lower is better) Translates to: RLASVLLGSVVLPIPSAGFIVTS*STCRDI Trigger: TATGTCCCTACATGTAGACAACGAAGTGACAATAAA...CCCAGCACTGGGGATAGGAAGAACAACAGATCCCAGAAGCACACTGGCCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS TCA 90 bp | TTCCTCGAGAATTTATCATGGATTGAAGGGCTAATTCTTCAACCTTaGGGCGGTTCAGTTGGTCGTGTAGAGCCGCCTTTAGACGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: FLENLSWIEGLILQP*GGSVGRVEPPLDAA Trigger: TGCTGCGTCTAAAGGCGGCTCTACACGACCAACTGAACCGCCTCAAGGTTGAAGAATTAGCCCTTCAATCCATGATAAATTCTCGAGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS TCA 90 bp | TTGTCTACATGTAGGGACATATCACATAACTGTTCAGGTGCAGGCTaGGAAGACAGTGTCTCGGTCCTTCCTCGAGAATTTATCATGGAT | + |
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Preference number: 5 (lower is better) Translates to: LSTCRDISHNCSGAG*EDSVSVLPREFIMD Trigger: ATCCATGATAAATTCTCGAGGAAGGACCGAGACACTGTCTTCTCAGCCTGCACCTGAACAGTTATGTGATATGTCCCTACATGTAGACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS TCA 90 bp | TCCTCTTCTTCCATAGGGCTCCTTGTGCTCAGCTTCAGTGTAGTCTaGTTTATTGTCACTTCGTTGTCTACATGTAGGGACATATCACAT | + |
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Preference number: 5 (lower is better) Translates to: SSSSIGLLVLSFSVV*FIVTSLSTCRDISH Trigger: ATGTGATATGTCCCTACATGTAGACAACGAAGTGACAATAAATCAGACTACACTGAAGCTGAGCACAAGGAGCCCTATGGAAGAAGAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS TCA 72 bp | TGTAGGGACATATCACATAACTGTTCAGGTGCAGGCTaGGAAGACAGTGTCTCGGTCCTTCCTCGAGAATTT | + |
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Preference number: 6 (lower is better) Translates to: CRDISHNCSGAG*EDSVSVLPREF Trigger: AAATTCTCGAGGAAGGACCGAGACACTGTCTTCTCAGCCTGCACCTGAACAGTTATGTGATATGTCCCTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS TCA 72 bp | TCCATAGGGCTCCTTGTGCTCAGCTTCAGTGTAGTCTaGTTTATTGTCACTTCGTTGTCTACATGTAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: SIGLLVLSFSVV*FIVTSLSTCRD Trigger: GTCCCTACATGTAGACAACGAAGTGACAATAAATCAGACTACACTGAAGCTGAGCACAAGGAGCCCTATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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| CDS TCA 72 bp | AATTTATCATGGATTGAAGGGCTAATTCTTCAACCTTaGGGCGGTTCAGTTGGTCGTGTAGAGCCGCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: NLSWIEGLILQP*GGSVGRVEPPL Trigger: TAAAGGCGGCTCTACACGACCAACTGAACCGCCTCAAGGTTGAAGAATTAGCCCTTCAATCCATGATAAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034965.8 |
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