RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNAPC4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036281

Ensembl transcript IDs: ENSMUST00000035427.11, ENSMUST00000114115.9, ENSMUST00000123934.2

Found 426 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTaGTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCT +
Preference number: 1 (lower is better)
Translates to: PAAFWLPVFLLRVVY*FWAGLGPASCLVRA
Trigger: AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CCA 90 bp CTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTaGATTCTGGACCCCTTGACGCCTTGTCCTTGCTGCTCAAAGCAA +
Preference number: 1 (lower is better)
Translates to: LLLGRLGPCLLPSES*ILDPLTPCPCCSKQ
Trigger: TTGCTTTGAGCAGCAAGGACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CCA 90 bp CCTGTAGATCGCTACCGACAGCTTGGTCCTCAGCCTGCAGCTTTCTaGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCA +
Preference number: 1 (lower is better)
Translates to: PVDRYRQLGPQPAAF*LPVFLLRVVYCFWA
Trigger: TGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGAGGACCAAGCTGTCGGTAGCGATCTACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CAA 90 bp CGACAGCTTGGTCCTCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTaGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCC +
Preference number: 2 (lower is better)
Translates to: RQLGPQPAAFWLPVF*LRVVYCFWAGLGPA
Trigger: GGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGAGGACCAAGCTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CAA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTaGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTCCT +
Preference number: 2 (lower is better)
Translates to: AEGCVLLLGRLGPCL*PSESWILDPLTPCP
Trigger: AGGACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR-3UTR TCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGATTCTGGACCCCTTaGCGCCTTGTCCTTGCTGCT +
Preference number: 2 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSGFWTP*RLVLAA
Trigger: AGCAGCAAGGACAAGGCGTCAAGGGGTCCAGAATCC...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTAGGCAGGCTTGGGCCCTaGCTCTTGCCTAGTGAGAGC +
Preference number: 2 (lower is better)
Translates to: QVACDHVATAITTACRSLGRLGP*LLPSES
Trigger: GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCC...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTGGCAGGCTTGGGCCCTaGCTCTTGCCTAGTGAGAGC +
Preference number: 2 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGGRLGP*LLPSES
Trigger: GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCC...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CCA 72 bp GGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTaGATTCTGGACCCCTTGACGCCTTGTCCTTGCTGC +
Preference number: 3 (lower is better)
Translates to: GRLGPCLLPSES*ILDPLTPCPCC
Trigger: GCAGCAAGGACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR GCA 72 bp GAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTaGCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCC +
Preference number: 3 (lower is better)
Translates to: EGCVLLLGRLGP*LLPSESWILDP
Trigger: GGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR-3UTR CAA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATGCTTCTGGGCAGGCTaGGGCCCTGCCTCTTGCCTA +
Preference number: 3 (lower is better)
Translates to: QVACDHVATAITTACRSLCFWAG*GPASCL
Trigger: TAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR GCA 72 bp TTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTaGTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTA +
Preference number: 3 (lower is better)
Translates to: FWLPVFLLRVVY*FWAGLGPASCL
Trigger: TAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR GCA 72 bp GCCTGTAGATCGCTACCGACAGCTTGGTCCTCAGCCTaGAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGT +
Preference number: 3 (lower is better)
Translates to: ACRSLPTAWSSA*SFLASRLLAEG
Trigger: ACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGAGGACCAAGCTGTCGGTAGCGATCTACAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CCA 72 bp CTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTCTaGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGA +
Preference number: 3 (lower is better)
Translates to: LPVFLLRVVYCF*AGLGPASCLVR
Trigger: TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGACGGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CCA 72 bp CGCTACCGACAGCTTGGTCCTCAGCCTGCAGCTTTCTaGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGC +
Preference number: 3 (lower is better)
Translates to: RYRQLGPQPAAF*LPVFLLRVVYC
Trigger: GCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGAGGACCAAGCTGTCGGTAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTTCCGGGTGCCAGGCTaGAGCAGTGCAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESFRVPG*SSAGGW
Trigger: CCAGCCCCCTGCACTGCTCCAGCCTGGCACCCGGAA...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGGCCGGAGGCCACGTaGGGCTGCTACAGGGACTTG +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPWPEAT*GCYRDL
Trigger: CAAGTCCCTGTAGCAGCCCCACGTGGCCTCCGGCCA...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTCCCCAGCTGCCTGGCTaGCCGCCAGAGAGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSPQLPG*PPERKP
Trigger: AGGCTTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGG...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTCGCTGCTGCCGTCGCTaGCACTGCTGCTGCCGTAGT +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCRCCRR*HCCCRS
Trigger: ACTACGGCAGCAGCAGTGGCAGCGACGGCAGCAGCG...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAAGGTTGGGCCCCAGCTaGCTGGCTGGCCGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRRLGPS*LAGRQR
Trigger: TCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACCT...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTAGGTTGGGCCCCAGCTaGCTGGCTGGCCGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASRLGPS*LAGRQR
Trigger: TCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACCT...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGCCGGAGGCCACGTaGGGCTGCTACAGGGACTTG +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESWPEAT*GCYRDL
Trigger: CAAGTCCCTGTAGCAGCCCCACGTGGCCTCCGGCCA...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTGGGGTCATCACTGACTaGGGGAGGCCCACCACAGCT +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPGVITD*GRPTTA
Trigger: AGCTGTGGTGGGCCTCCCCCAGTCAGTGATGACCCC...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGGGCCCCAGCTGCCTaGCTGGCCGCCAGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASWAPAA*LAAREE
Trigger: TTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCA...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGCCTTGGGATCAGGTTaGGCCCCAGCTGCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVALGSG*APAAWL
Trigger: CAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGC...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTCACAGCCACGTCTGGTaGCAGGGTGGTGGGGATGCT +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCHSHVW*QGGGDA
Trigger: AGCATCCCCACCACCCTGTCACCAGACGTGGCTGTG...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCGCTGCTGCCGTCGCTaGCACTGCTGCTGCCGTAGT +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASRCCRR*HCCCRS
Trigger: ACTACGGCAGCAGCAGTGGCAGCGACGGCAGCAGCG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTCACTTGCTCAGACACTaGGAGCCTGACCGATGGGGC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPHLLRH*EPDRWG
Trigger: GCCCCATCGGTCAGGCTCCCAGTGTCTGAGCAAGTG...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGCAGGGGCTGCAACCTaGGTCCCTTTGTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVAGAAT*VPLWGG
Trigger: TCCTCCCCACAAAGGGACCCAGGTTGCAGCCCCTGC...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTGCAGGGGCTGCAACCTaGGTCCCTTTGTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCAGAAT*VPLWGG
Trigger: TCCTCCCCACAAAGGGACCCAGGTTGCAGCCCCTGC...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGCCTTGGGATCAGGTTaGGCCCCAGCTGCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFALGSG*APAAWL
Trigger: CAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCGTCTGGTGACAGGGTaGTGGGGATGCTGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTRLVTG*WGCCWG
Trigger: CCCCCAACAGCATCCCCACCACCCTGTCACCAGACG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGTGCCGTAGTCTTCACTaGTGCTGCTGCTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVCRSLH*CCCCCR
Trigger: GCGGCAGCAGCAGCAGCAGCAGTGAAGACTACGGCA...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATTTCACTGCCGCTGCTaGCGTCGCTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRFHCRC*RRCHCC
Trigger: GCAGCAGTGGCAGCGACGGCAGCAGCGGCAGTGAAA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGCCAGGCTGGAGCAGTaGAGGGGGCTGGCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASARLEQ*RGLAFP
Trigger: AGGAAAAGCCAGCCCCCTGCACTGCTCCAGCCTGGC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCGCTGCTGGGCTTGCTTaGACTCTGCAGGCCATGCAG +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESAAGLA*TLQAMQ
Trigger: CTGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGC...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATTCCGGGTGCCAGGCTaGAGCAGTGCAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLFRVPG*SSAGGW
Trigger: CCAGCCCCCTGCACTGCTCCAGCCTGGCACCCGGAA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTGCTGCTACAGGGACTTaGAAGGGGGTAGCCTCAGTC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPAATGT*KGVASV
Trigger: GACTGAGGCTACCCCCTTCCAAGTCCCTGTAGCAGC...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTGAGTGGCCTTCTTaGCATGGGACTCACGGAGCC +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTPEWPS*HGTHGA
Trigger: GGCTCCGTGAGTCCCATGCCAAGAAGGCCACTCAGG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTGAATGGGCAGGACCTTaGGCAGGCTCTGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCEWAGP*AGSASG
Trigger: CCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTC...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACCCCAGCTGCCTGGCTaGCCGCCAGAGAGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLPQLPG*PPERKP
Trigger: AGGCTTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATGGGCCCCAGCTGCCTaGCTGGCCGCCAGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLWAPAA*LAAREE
Trigger: TTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTCGTCTGGTGACAGGGTaGTGGGGATGCTGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRARLVTG*WGCCWG
Trigger: CCCCCAACAGCATCCCCACCACCCTGTCACCAGACG...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTCAGACACTGGGAGCCTaGCCGATGGGGCAATTCAGA +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCQTLGA*PMGQFR
Trigger: TCTGAATTGCCCCATCGGTCAGGCTCCCAGTGTCTG...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCCAGCAGCTGGCTGTTaGGACCAAGAGCCTGAGTGG +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASPAAGC*DQEPEW
Trigger: CCACTCAGGCTCTTGGTCTCAACAGCCAGCTGCTGG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTCCAGCAGCTGGCTGTTaGGACCAAGAGCCTGAGTGG +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAPAAGC*DQEPEW
Trigger: CCACTCAGGCTCTTGGTCTCAACAGCCAGCTGCTGG...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCAGGCTGGACTTGGTTaGCAGGGGCTGTCCACTTAC +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTQAGLG*QGLSTY
Trigger: GTAAGTGGACAGCCCCTGGCAACCAAGTCCAGCCTG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGATGATAGGGCATCCTaGTCCCCAGCGGGGGTACAA +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVDDRAS*SPAGVQ
Trigger: TTGTACCCCCGCTGGGGAGCAGGATGCCCTATCATC...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGGGTTGTCCCGGAATTaGCTCTGTACCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVGLSRN*LCTSSR
Trigger: CCTGGAGCTGGTACAGAGGCAATTCCGGGACAACCC...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGCTGCTGGGCTTGCTTaGACTCTGCAGGCCATGCAG +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAAAGLA*TLQAMQ
Trigger: CTGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGC...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTACAGGGTCTGGGGCTaGTGGGCTTGCTTGCACTCT +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESYRVWG*WACLHS
Trigger: AGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTA...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGCTGCTCCTGGTTCTaGGCTAGCAACTGGCTAACC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPCCSWF*ASNWLT
Trigger: GGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCA...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTCTTCCTGCTGCTCCTaGTTCTGGGCTAGCAACTGG +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPSSCCS*FWASNW
Trigger: CCAGTTGCTAGCCCAGAACCAGGAGCAGCAGGAAGA...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTATCTTCTCCCAGTCGTaGCTGTCTAGCCGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCIFSQS*LSSRFP
Trigger: GGGGAACCGGCTAGACAGCCACGACTGGGAGAAGAT...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAAGTGCCACTCCAGGTaGCCATGTGTGGCAGCGATG +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVKCHSR*PCVAAM
Trigger: CATCGCTGCCACACATGGCCACCTGGAGTGGCACTT...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTCACTTGCTCAGACACTaGGAGCCTGACCGATGGGGC +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAHLLRH*EPDRWG
Trigger: GCCCCATCGGTCAGGCTCCCAGTGTCTGAGCAAGTG...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGCGTGGGCGCCCTTTGTaGCTGGCTCTCTTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVRGRPL*LALFAV
Trigger: AACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACG...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGACCTGAGTGGCCTTCTTaGCATGGGACTCACGGAGCC +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRPEWPS*HGTHGA
Trigger: GGCTCCGTGAGTCCCATGCCAAGAAGGCCACTCAGG...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCACTACTGGGGAACCATaGGGGACTGGCAGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFTTGEP*GTGSRG
Trigger: CCCTCTGCTGCCAGTCCCCCATGGTTCCCCAGTAGT...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGAATGGGCAGGACCTTaGGCAGGCTCTGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASEWAGP*AGSASG
Trigger: CCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGAGCAGCTCGAAGAATaGGCAGGACCTTGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAEQLEE*AGPWAG
Trigger: GCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGCTC...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGAGCAGCTCGAAGAATaGGCAGGACCTTGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFEQLEE*AGPWAG
Trigger: GCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGCTC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCGGGCTGTCCACTTACTaGTGGCTGCACAGACAGCTG +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESGLSTY*WLHRQL
Trigger: CAGCTGTCTGTGCAGCCACCAGTAAGTGGACAGCCC...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CAA 72 bp TGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTaGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACG +
Preference number: 4 (lower is better)
Translates to: CVLLLGRLGPCL*PSESWILDPLT
Trigger: CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGACAGACACTGGGAGCCTaGCCGATGGGGCAATTCAGA +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRQTLGA*PMGQFR
Trigger: TCTGAATTGCCCCATCGGTCAGGCTCCCAGTGTCTG...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCCTCCAGCTCCACATCTaGGTTTTCACTGCCGCTGCT +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESLQLHI*VFTAAA
Trigger: AGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAG...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACACAGCCACGTCTGGTaGCAGGGTGGTGGGGATGCT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLHSHVW*QGGGDA
Trigger: AGCATCCCCACCACCCTGTCACCAGACGTGGCTGTG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTAGGATCTCTTCCTGCTaGTCCTGGTTCTGGGCTAGC +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSRISSC*SWFWAS
Trigger: GCTAGCCCAGAACCAGGAGCAGCAGGAAGAGATCCT...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGATGAGGGCAGACTTCTaGCATCCTTCACCTTGGGGC +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVMRADF*HPSPWG
Trigger: GCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCAT...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTCCAAGATCTTCCACTTaGTCAGACACTGGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPPRSST*SDTGSL
Trigger: CAGGCTCCCAGTGTCTGAGCAAGTGGAAGATCTTGG...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATTTCACTGCCGCTGCTaGCGTCGCTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLFHCRC*RRCHCC
Trigger: GCAGCAGTGGCAGCGACGGCAGCAGCGGCAGTGAAA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCATCTGAGTTTTCACTaGCGCTGCTGCCGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASHLSFH*RCCRRC
Trigger: GCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCCATCTGAGTTTTCACTaGCGCTGCTGCCGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFHLSFH*RCCRRC
Trigger: GCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATG...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTAAAAGCAGCAGGGGCTaGAACCTGGGTCCCTTTGTG +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSKSSRG*NLGPFV
Trigger: CACAAAGGGACCCAGGTTGCAGCCCCTGCTGCTTTT...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTACCTTGGGCAGGCTCTaGTTCTGGGATGTGGTAGAG +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSTLGRL*FWDVVE
Trigger: CTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGT...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGATGATAGGGCATCCTaGTCCCCAGCGGGGGTACAA +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASDDRAS*SPAGVQ
Trigger: TTGTACCCCCGCTGGGGAGCAGGATGCCCTATCATC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGACAATGCCCGCAAGCTaGACAGGGAAGGGGGATGAT +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTTMPAS*TGKGDD
Trigger: ATCATCCCCCTTCCCTGTGCAGCTTGCGGGCATTGT...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATACAGGGTCTGGGGCTaGTGGGCTTGCTTGCACTCT +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRYRVWG*WACLHS
Trigger: AGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTATCTTCTCCCAGTCGTaGCTGTCTAGCCGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASIFSQS*LSSRFP
Trigger: GGGGAACCGGCTAGACAGCCACGACTGGGAGAAGAT...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTCATGTGTGGCAGCGATaGCCTTCAGCCTCTCTACTT +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPHVWQR*PSASLL
Trigger: AAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATG...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCAAGTGCCACTCCAGGTaGCCATGTGTGGCAGCGATG +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFKCHSR*PCVAAM
Trigger: CATCGCTGCCACACATGGCCACCTGGAGTGGCACTT...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTAGCTGGGTGAGCATGTaGTCTTCCTCTTCTGTCCAC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPSWVSM*SSSSVH
Trigger: GTGGACAGAAGAGGAAGACCACATGCTCACCCAGCT...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAAGCAGTGCAGGGGGCTaGCTTTTCCTCTCTCGAACC +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRSSAGG*LFLSRT
Trigger: GGTTCGAGAGAGGAAAAGCCAGCCCCCTGCACTGCT...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTAGCAGTGCAGGGGGCTaGCTTTTCCTCTCTCGAACC +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRASSAGG*LFLSRT
Trigger: GGTTCGAGAGAGGAAAAGCCAGCCCCCTGCACTGCT...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCGTGGGCGCCCTTTGTaGCTGGCTCTCTTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASRGRPL*LALFAV
Trigger: AACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGCTGCTACAGGGACTTaGAAGGGGGTAGCCTCAGTC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFAATGT*KGVASV
Trigger: GACTGAGGCTACCCCCTTCCAAGTCCCTGTAGCAGC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGACCAAGAGCCTGAGTaGCCTTCTTGGCATGGGACT +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSDQEPE*PSWHGT
Trigger: AGTCCCATGCCAAGAAGGCCACTCAGGCTCTTGGTC...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGGGCTGTCCACTTACTaGTGGCTGCACAGACAGCTG +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFGLSTY*WLHRQL
Trigger: CAGCTGTCTGTGCAGCCACCAGTAAGTGGACAGCCC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGGCCCTGAGGTCCCTTaGGTTCTGTGTCTGTACTGG +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFGPEVP*VLCLYW
Trigger: CCAGTACAGACACAGAACCCAAGGGACCTCAGGGCC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTTCTCTGTACAGGGTCTaGGGCTGCTGGGCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRASLYRV*GCWACL
Trigger: CAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGA...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTCTCTGTACAGGGTCTaGGGCTGCTGGGCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASSLYRV*GCWACL
Trigger: CAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGA...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTAACCTCACCAGGACTTaGAGCTCTCTGTACAGGGTC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPNLTRT*SSLYRV
Trigger: GACCCTGTACAGAGAGCTCCAAGTCCTGGTGAGGTT...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTTTCAGCAATTTGGGCTaGAGCAGACGTTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCFSNLG*SRRCRR
Trigger: CCGCCTACAACGTCTGCTTCAGCCCAAATTGCTGAA...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTAGCTGGTTGATGTCCTaGATCTCCTTCTCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPSWLMS*ISFSAS
Trigger: GGAAGCAGAGAAGGAGATTCAGGACATCAACCAGCT...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTCTCCAGCTCCACATCTaGGTTTTCACTGCCGCTGCT +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRALQLHI*VFTAAA
Trigger: AGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAG...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACTGGAGGATCACAGGTaGGGAGACCAGCAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLLEDHR*GDQQLA
Trigger: AGCCAGCTGCTGGTCTCCTCACCTGTGATCCTCCAG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTAGGATCTCTTCCTGCTaGTCCTGGTTCTGGGCTAGC +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRARISSC*SWFWAS
Trigger: GCTAGCCCAGAACCAGGAGCAGCAGGAAGAGATCCT...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCCCGGTTCCCCAACAATaGTTCCTCTGGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFPVPQQ*FLWELV
Trigger: AACCAGCTCCCAGAGGAAGCATTGTTGGGGAACCGG...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGACTTCCGGATCTCCTCTaGACTGCGGGCTCCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRLPDLL*TAGSFK
Trigger: TTTGAAGGAGCCCGCAGTGCAGAGGAGATCCGGAAG...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTCTTCCGGATCTCCTCTaGACTGCGGGCTCCTTCAAA +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRALPDLL*TAGSFK
Trigger: TTTGAAGGAGCCCGCAGTGCAGAGGAGATCCGGAAG...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGCACTGAAAGGCACTaGGGCTTGTCCCAAGTTCCT +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAGTERH*GLSQVP
Trigger: AGGAACTTGGGACAAGCCGCAGTGCCTTTCAGTGCC...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGGCACTGAAAGGCACTaGGGCTTGTCCCAAGTTCCT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFGTERH*GLSQVP
Trigger: AGGAACTTGGGACAAGCCGCAGTGCCTTTCAGTGCC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTCTCCTCTTGGAACAGTaGTGTGGGTCTCATAGGGCA +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCLLLEQ*CGSHRA
Trigger: TGCCCTATGAGACCCACAGCACTGTTCCAAGAGGAG...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCTCCTCTTGGAACAGTaGTGTGGGTCTCATAGGGCA +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTLLLEQ*CGSHRA
Trigger: TGCCCTATGAGACCCACAGCACTGTTCCAAGAGGAG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATTTGTTCCCCCGTCATaGTTGGGAGGCAGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRFVPPS*LGGSLC
Trigger: ACACAGGCTGCCTCCCAAGCATGACGGGGGAACAAA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAAAAAGCAGCAGGGGCTaGAACCTGGGTCCCTTTGTG +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRKSSRG*NLGPFV
Trigger: CACAAAGGGACCCAGGTTGCAGCCCCTGCTGCTTTT...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTGGAGAGCTTTGTCCTTaGGGTCCTCCTCATCATTGC +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCGELCP*GPPHHC
Trigger: GCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCC...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCTGCTCCTGGTTCTaGGCTAGCAACTGGCTAACC +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASCCSWF*ASNWLT
Trigger: GGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCA...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTCTTCCTGCTGCTCCTaGTTCTGGGCTAGCAACTGG +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASSSCCS*FWASNW
Trigger: CCAGTTGCTAGCCCAGAACCAGGAGCAGCAGGAAGA...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTATCTCTTGGACCAGCTaGGTGAGCATGTGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSISWTS*VSMWSS
Trigger: GGAAGACCACATGCTCACCCAGCTGGTCCAAGAGAT...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGGCATCGCTCCTACCTaGCACCTCTTCCCGGATTTT +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRGIAPT*HLFPDF
Trigger: AAAATCCGGGAAGAGGTGCCAGGTAGGAGCGATGCC...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTCTCTCTGTGACTaGCTGGTGATCAGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTPSLCD*LVISLV
Trigger: TACCAGGCTGATCACCAGCCAGTCACAGAGAGAAGG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGGGCGCCCTTTGTGGCTaGCTCTCTTTGCAGTTTGTT +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTGALCG*LSLQFV
Trigger: AACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCC...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGACCAAGAGCCTGAGTaGCCTTCTTGGCATGGGACT +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASDQEPE*PSWHGT
Trigger: AGTCCCATGCCAAGAAGGCCACTCAGGCTCTTGGTC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTAACTACTGGGGAACCATaGGGGACTGGCAGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLTTGEP*GTGSRG
Trigger: CCCTCTGCTGCCAGTCCCCCATGGTTCCCCAGTAGT...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTAAATGGTCTGTAGGTTaGGGGGCTGCTTGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCKWSVG*GAACLW
Trigger: CCACAGACAAGCAGCCCCCCAACCTACAGACCATTT...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAAATGGTCTGTAGGTTaGGGGGCTGCTTGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVKWSVG*GAACLW
Trigger: CCACAGACAAGCAGCCCCCCAACCTACAGACCATTT...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTGGGGTCATCACTGACTaGGGGAGGCCCACCACAGCT +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLGVITD*GRPTTA
Trigger: AGCTGTGGTGGGCCTCCCCCAGTCAGTGATGACCCC...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGAAAAGCAGGAGTCTTaGCAGGGGAAGGCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVEKQES*QGKAAV
Trigger: AACAGCTGCCTTCCCCTGCCAAGACTCCTGCTTTTC...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAAAAGCAGGAGTCTTaGCAGGGGAAGGCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSEKQES*QGKAAV
Trigger: AACAGCTGCCTTCCCCTGCCAAGACTCCTGCTTTTC...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGTGTCTGTACTGGCTaGAGGCTGTTCCAGAAAAGC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPCVCTG*RLFQKS
Trigger: GCTTTTCTGGAACAGCCTCCAGCCAGTACAGACACA...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGCTGCCTCACTTTCCTaGGAAAGGAGACTTAGGTCC +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSAASLS*ERRLRS
Trigger: GGACCTAAGTCTCCTTTCCCAGGAAAGTGAGGCAGC...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGAACCTCACCAGGACTTaGAGCTCTCTGTACAGGGTC +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTNLTRT*SSLYRV
Trigger: GACCCTGTACAGAGAGCTCCAAGTCCTGGTGAGGTT...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCGCCTATGTACATGTATaGGGGCAGACTTCTGCCATC +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESAYVHV*GQTSAI
Trigger: GATGGCAGAAGTCTGCCCTCATACATGTACATAGGC...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTAGCTGGTTGATGTCCTaGATCTCCTTCTCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSSWLMS*ISFSAS
Trigger: GGAAGCAGAGAAGGAGATTCAGGACATCAACCAGCT...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTAGTCTCTCCCTTCCATaGAGTAGACGATCTTGCGGT +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCSLSLP*SRRSCG
Trigger: ACCGCAAGATCGTCTACTTCATGGAAGGGAGAGACT...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGAGGATCACAGGTaGGGAGACCAGCAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLLEDHR*GDQQLA
Trigger: AGCCAGCTGCTGGTCTCCTCACCTGTGATCCTCCAG...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGGTCCTCCTCATCATTaGTGCTCTCACTCGACCCTT +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRGPPHH*CSHSTL
Trigger: AAGGGTCGAGTGAGAGCAGCAATGATGAGGAGGACC...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGTCTGCTTCCTTAATCTaGTTCTCCAGGGCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVSASLI*FSRACL
Trigger: AAGGCAGGCCCTGGAGAAGCAGATTAAGGAAGCAGA...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGTCTGCTTCCTTAATCTaGTTCTCCAGGGCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTSASLI*FSRACL
Trigger: AAGGCAGGCCCTGGAGAAGCAGATTAAGGAAGCAGA...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGTCCCAAGTTCCTCTaGAACCAAGTGCCACTCCAG +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASCPKFL*NQVPLQ
Trigger: CTGGAGTGGCACTTGGTTGCAGAGGAACTTGGGACA...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGCTCTTCCTCTGCAGATaGTGTTTCTTCCTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVLFLCR*CFFLAK
Trigger: CTTGGCCAGGAAGAAACAGCATCTGCAGAGGAAGAG...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTAGAGAGGCATCCTGAGTaGAGCAGGAGACAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLERHPE*SRRQQG
Trigger: ACCCTGCTGTCTCCTGCTGCACTCAGGATGCCTCTC...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTTGGGGCTGCTGGGCTTaGTTGCACTCTGCAGGCCAT +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLWGCWA*LHSAGH
Trigger: ATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCA...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGGAGAGCTTTGTCCTTaGGGTCCTCCTCATCATTGC +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRGELCP*GPPHHC
Trigger: GCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCC...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCCCCAGTGCTTCCACTTaGTCACCAAGAGCTGTTCAA +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESPSAST*SPRAVQ
Trigger: TTGAACAGCTCTTGGTGACCAAGTGGAAGCACTGGG...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTCAACAATGCTTCCTCTaGGAGCTGGTTGATGTCCTG +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCQQCFL*ELVDVL
Trigger: CAGGACATCAACCAGCTCCCAGAGGAAGCATTGTTG...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGACATGTGTGGCAGCGATaGCCTTCAGCCTCTCTACTT +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRHVWQR*PSASLL
Trigger: AAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATG...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAATCTCTTGGACCAGCTaGGTGAGCATGTGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRISWTS*VSMWSS
Trigger: GGAAGACCACATGCTCACCCAGCTGGTCCAAGAGAT...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGATCCCCTTTTCAGGCTaGGATCTAAGCTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVIPFSG*DLSSWS
Trigger: GGACCAAGAGCTTAGATCCCAGCCTGAAAAGGGGAT...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGCCTGCGCCCCATACTTaGCAACAGCTTGAAGCAATT +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVPAPHT*QQLEAI
Trigger: AATTGCTTCAAGCTGTTGCCAAGTATGGGGCGCAGG...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGGCGCCCTTTGTGGCTaGCTCTCTTTGCAGTTTGTT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFGALCG*LSLQFV
Trigger: AACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGACCTGGGTCCCTTTGTaGGGAGGATTTAGGGAAATG +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTTWVPL*GGFREM
Trigger: CATTTCCCTAAATCCTCCCCACAAAGGGACCCAGGT...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGCTGCCTCACTTTCCTaGGAAAGGAGACTTAGGTCC +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASAASLS*ERRLRS
Trigger: GGACCTAAGTCTCCTTTCCCAGGAAAGTGAGGCAGC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGTCCAAGTCCTGTTTCTaGAGGAGGAGGCTGGACAAT +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTSKSCF*RRRLDN
Trigger: ATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGA...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
3UTR CAA 72 bp TTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTaGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTC +
Preference number: 4 (lower is better)
Translates to: FLLRVVYCFWAG*GPASCLVRAGF
Trigger: GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTTCCATTCCTGCTTACTaGTGCTTGGATGCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCSIPAY*CLDAQN
Trigger: GTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGA...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCAGTCTCTCCCTTCCATaGAGTAGACGATCTTGCGGT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFSLSLP*SRRSCG
Trigger: ACCGCAAGATCGTCTACTTCATGGAAGGGAGAGACT...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACCGGTTCCCCAACAATaGTTCCTCTGGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLPVPQQ*FLWELV
Trigger: AACCAGCTCCCAGAGGAAGCATTGTTGGGGAACCGG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTCTGTTGAGGAGTCAGTaGTCTACTCTTCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSLLRSQ*STLLQR
Trigger: TCTCTGGAGAAGAGTAGAGCACTGACTCCTCAACAG...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATTTGTTCCCCCGTCATaGTTGGGAGGCAGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLFVPPS*LGGSLC
Trigger: ACACAGGCTGCCTCCCAAGCATGACGGGGGAACAAA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTCAGGCTGGACTTGGTTaGCAGGGGCTGTCCACTTAC +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLQAGLG*QGLSTY
Trigger: GTAAGTGGACAGCCCCTGGCAACCAAGTCCAGCCTG...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTGGGTTGTCCCGGAATTaGCTCTGTACCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLGLSRN*LCTSSR
Trigger: CCTGGAGCTGGTACAGAGGCAATTCCGGGACAACCC...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTTCTGGGCTAGCAACTaGCTAACCTCTGCTAGCTTT +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESFWASN*LTSASF
Trigger: AAAGCTAGCAGAGGTTAGCCAGTTGCTAGCCCAGAA...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGTTCTGGGCTAGCAACTaGCTAACCTCTGCTAGCTTT +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVFWASN*LTSASF
Trigger: AAAGCTAGCAGAGGTTAGCCAGTTGCTAGCCCAGAA...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTCTTGTCCTTGAAGTATaGCTTCAGGAAGTGGCCTAT +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPLVLEV*LQEVAY
Trigger: ATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAG...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCCCAGTGCTTCCACTTaGTCACCAAGAGCTGTTCAA +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASPSAST*SPRAVQ
Trigger: TTGAACAGCTCTTGGTGACCAAGTGGAAGCACTGGG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCCCAGCTTCAGCAATTTaGGCTGAAGCAGACGTTGTA +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESPASAI*AEADVV
Trigger: TACAACGTCTGCTTCAGCCCAAATTGCTGAAGCTGG...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCTGCTTACTGATGCTTaGATGCTCAGAACTCTGCCA +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTLLTDA*MLRTLP
Trigger: TGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCCTGCTTACTGATGCTTaGATGCTCAGAACTCTGCCA +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESLLTDA*MLRTLP
Trigger: TGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAG...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGTGGGATCTAAGCTCTTaGTCCAACGGTAGATCAGCT +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVWDLSS*SNGRSA
Trigger: AGCTGATCTACCGTTGGACCAAGAGCTTAGATCCCA...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCATCCCCTTTTCAGGCTaGGATCTAAGCTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFIPFSG*DLSSWS
Trigger: GGACCAAGAGCTTAGATCCCAGCCTGAAAAGGGGAT...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCCCTGCGCCCCATACTTaGCAACAGCTTGAAGCAATT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFPAPHT*QQLEAI
Trigger: AATTGCTTCAAGCTGTTGCCAAGTATGGGGCGCAGG...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGGATGCTGTTTCTTCCTaGCCAAGATCTTCCACTTGC +
Preference number: 4 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVDAVSS*PRSSTC
Trigger: GCAAGTGGAAGATCTTGGCCAGGAAGAAACAGCATC...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTTTGCTTGTAGTCCTATaGTCTCAGGGGTCATCACTG +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSLLVVL*SQGSSL
Trigger: CAGTGATGACCCCTGAGACCATAGGACTACAAGCAA...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTCTTCAGAGTCTGAACTaGGACTGGATTCAGAGACTT +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSLQSLN*DWIQRL
Trigger: AAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAG...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTCCATTCCTGCTTACTaGTGCTTGGATGCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFSIPAY*CLDAQN
Trigger: GTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGA...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAACAGAGAGCAACTTCTaGGTTGTGAGAACCCAGTTG +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRTESNF*VVRTQL
Trigger: CAACTGGGTTCTCACAACTCAGAAGTTGCTCTCTGT...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTACAGAGAGCAACTTCTaGGTTGTGAGAACCCAGTTG +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRATESNF*VVRTQL
Trigger: CAACTGGGTTCTCACAACTCAGAAGTTGCTCTCTGT...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTAGGTCCTCCTCATCATTaGTGCTCTCACTCGACCCTT +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLGPPHH*CSHSTL
Trigger: AAGGGTCGAGTGAGAGCAGCAATGATGAGGAGGACC...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTCTGTGCTCCATTCCTaGTTACTGATGCTTGGATGC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFSVLHS*LLMLGC
Trigger: GCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGA...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCATTTTAAACCAGTCCTaGGCCCCATACTTGGCAACA +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESILNQS*APYLAT
Trigger: TGTTGCCAAGTATGGGGCGCAGGACTGGTTTAAAAT...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTCTGTTGAGGAGTCAGTaGTCTACTCTTCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRALLRSQ*STLLQR
Trigger: TCTCTGGAGAAGAGTAGAGCACTGACTCCTCAACAG...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGTAGAGCCTGTCTCTTaGGTCTCTGCTTATTCTGGT +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASVEPVS*VSAYSG
Trigger: ACCAGAATAAGCAGAGACGCAAGAGACAGGCTCTAC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGTAGAGCCTGTCTCTTaGGTCTCTGCTTATTCTGGT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFVEPVS*VSAYSG
Trigger: ACCAGAATAAGCAGAGACGCAAGAGACAGGCTCTAC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCCTTGTCCTTGAAGTATaGCTTCAGGAAGTGGCCTAT +
Preference number: 4 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESLVLEV*LQEVAY
Trigger: ATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAG...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCCCAGCTTCAGCAATTTaGGCTGAAGCAGACGTTGTA +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFPASAI*AEADVV
Trigger: TACAACGTCTGCTTCAGCCCAAATTGCTGAAGCTGG...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTGGCATCGCTCCTACCTaGCACCTCTTCCCGGATTTT +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLGIAPT*HLFPDF
Trigger: AAAATCCGGGAAGAGGTGCCAGGTAGGAGCGATGCC...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACCTTCTCTCTGTGACTaGCTGGTGATCAGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLPSLCD*LVISLV
Trigger: TACCAGGCTGATCACCAGCCAGTCACAGAGAGAAGG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCCTTCAGAGTCTGAACTaGGACTGGATTCAGAGACTT +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFLQSLN*DWIQRL
Trigger: AAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAG...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTCTGAATCTCCTTCTCTaGTTCCTTAATCTGCTTCTC +
Preference number: 4 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSLNLLL*FLNLLL
Trigger: GAGAAGCAGATTAAGGAAGCAGAGAAGGAGATTCAG...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATTACTGATGCTTGGATaGTCAGAACTCTGCCAGAAC +
Preference number: 4 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRLLMLG*SELCQN
Trigger: GTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTTACTGATGCTTGGATaGTCAGAACTCTGCCAGAAC +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASLLMLG*SELCQN
Trigger: GTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAA...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTTGTCCCAAGTTCCTCTaGAACCAAGTGCCACTCCAG +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLCPKFL*NQVPLQ
Trigger: CTGGAGTGGCACTTGGTTGCAGAGGAACTTGGGACA...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCAGGGTTTTGTTGTACTaGTGGAATTTCTGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFRVLLY*WNFCRH
Trigger: GTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCT...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTAGGGTTTTGTTGTACTaGTGGAATTTCTGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: VVYCFWAGLGPASCLVRARVLLY*WNFCRH
Trigger: GTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCT...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTCCAAGATCTTCCACTTaGTCAGACACTGGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLPRSST*SDTGSL
Trigger: CAGGCTCCCAGTGTCTGAGCAAGTGGAAGATCTTGG...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTATCCTTTCAAGCTCCTaGATCTCCTGTGTTATTTTC +
Preference number: 4 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPILSSS*ISCVIF
Trigger: GAAAATAACACAGGAGATCCAGGAGCTTGAAAGGAT...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTTATGGCTTCAGGAAGTaGCCTATGTACATGTATGAG +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCYGFRK*PMYMYE
Trigger: CTCATACATGTACATAGGCCACTTCCTGAAGCCATA...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACAACAATGCTTCCTCTaGGAGCTGGTTGATGTCCTG +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLQQCFL*ELVDVL
Trigger: CAGGACATCAACCAGCTCCCAGAGGAAGCATTGTTG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATGTGTCTGTACTGGCTaGAGGCTGTTCCAGAAAAGC +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLCVCTG*RLFQKS
Trigger: GCTTTTCTGGAACAGCCTCCAGCCAGTACAGACACA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTTCAATCTGCAATAGCTaGATAAGCAGTGTGAATACC +
Preference number: 4 (lower is better)
Translates to: GPCLLPSESWILDPLTPCSICNS*ISSVNT
Trigger: GGTATTCACACTGCTTATTCAGCTATTGCAGATTGA...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATCTGTGCTCCATTCCTaGTTACTGATGCTTGGATGC +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLSVLHS*LLMLGC
Trigger: GCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCTGTTGTTCTTCTTTTaGATTCCACCGTCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: RLGPCLLPSESWILDPLTLLFFF*IPPSLF
Trigger: AAAAAGGGACGGTGGAATGCAAAAGAAGAACAACAG...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTATGGCTTCAGGAAGTaGCCTATGTACATGTATGAG +
Preference number: 4 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFYGFRK*PMYMYE
Trigger: CTCATACATGTACATAGGCCACTTCCTGAAGCCATA...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTACCTGGGTCCCTTTGTaGGGAGGATTTAGGGAAATG +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLTWVPL*GGFREM
Trigger: CATTTCCCTAAATCCTCCCCACAAAGGGACCCAGGT...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCTGTTGTTCTTCTTTTaGATTCCACCGTCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASLLFFF*IPPSLF
Trigger: AAAAAGGGACGGTGGAATGCAAAAGAAGAACAACAG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTGCCGTAGTCTTCACTaGTGCTGCTGCTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGCRSLH*CCCCCR
Trigger: GCGGCAGCAGCAGCAGCAGCAGTGAAGACTACGGCA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTGGGGCTGCTGGGCTTaGTTGCACTCTGCAGGCCAT +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGWGCWA*LHSAGH
Trigger: ATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACTTCAAAGTGGACGCTaGTGGATCCAGGATACAAAA +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLLQSGR*WIQDTK
Trigger: TTTTGTATCCTGGATCCACCAGCGTCCACTTTGAAG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTTGGGATCTAAGCTCTTaGTCCAACGGTAGATCAGCT +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLWDLSS*SNGRSA
Trigger: AGCTGATCTACCGTTGGACCAAGAGCTTAGATCCCA...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTTTTAGCATCTTCCTCTaGGGCCCAGAATCCCCTTTT +
Preference number: 4 (lower is better)
Translates to: SACSFLASRLLAEGCVLLFSIFL*GPESPF
Trigger: AAAAGGGGATTCTGGGCCCCAGAGGAAGATGCTAAA...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTATACTTGGCAACAGCTTaGAGCAATTTAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLYLATA*SNLASS
Trigger: GGAAGATGCTAAATTGCTTCAAGCTGTTGCCAAGTA...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTGGCCCTGAGGTCCCTTaGGTTCTGTGTCTGTACTGG +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGGPEVP*VLCLYW
Trigger: CCAGTACAGACACAGAACCCAAGGGACCTCAGGGCC...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTGTCCCTTCTCTCTGTaGCTGGCTGGTGATCAGCCT +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGCPFSL*LAGDQP
Trigger: AGGCTGATCACCAGCCAGTCACAGAGAGAAGGGACA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTACCTTGGGCAGGCTCTaGTTCTGGGATGTGGTAGAG +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGTLGRL*FWDVVE
Trigger: CTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGT...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTACAATGCCCGCAAGCTaGACAGGGAAGGGGGATGAT +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGTMPAS*TGKGDD
Trigger: ATCATCCCCCTTCCCTGTGCAGCTTGCGGGCATTGT...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTAATCCTTTCAAGCTCCTaGATCTCCTGTGTTATTTTC +
Preference number: 4 (lower is better)
Translates to: QVACDHVATAITTACRSLILSSS*ISCVIF
Trigger: GAAAATAACACAGGAGATCCAGGAGCTTGAAAGGAT...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTAGCTGGGTGAGCATGTaGTCTTCCTCTTCTGTCCAC +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGSWVSM*SSSSVH
Trigger: GTGGACAGAAGAGGAAGACCACATGCTCACCCAGCT...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTGCCTATGTACATGTATaGGGGCAGACTTCTGCCATC +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGAYVHV*GQTSAI
Trigger: GATGGCAGAAGTCTGCCCTCATACATGTACATAGGC...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTCTCTTCCTCTGCAGATaGTGTTTCTTCCTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGLFLCR*CFFLAK
Trigger: CTTGGCCAGGAAGAAACAGCATCTGCAGAGGAAGAG...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTCCAAGTCCTGTTTCTaGAGGAGGAGGCTGGACAAT +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGSKSCF*RRRLDN
Trigger: ATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTTTAGCATCTTCCTCTaGGGCCCAGAATCCCCTTTT +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGFSIFL*GPESPF
Trigger: AAAAGGGGATTCTGGGCCCCAGAGGAAGATGCTAAA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTGATGCTGTTTCTTCCTaGCCAAGATCTTCCACTTGC +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGDAVSS*PRSSTC
Trigger: GCAAGTGGAAGATCTTGGCCAGGAAGAAACAGCATC...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTTGCTTGTAGTCCTATaGTCTCAGGGGTCATCACTG +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGLLVVL*SQGSSL
Trigger: CAGTGATGACCCCTGAGACCATAGGACTACAAGCAA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR GCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTATTTTAAACCAGTCCTaGGCCCCATACTTGGCAACA +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGILNQS*APYLAT
Trigger: TGTTGCCAAGTATGGGGCGCAGGACTGGTTTAAAAT...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTACTTGGCAACAGCTTaGAGCAATTTAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGYLATA*SNLASS
Trigger: GGAAGATGCTAAATTGCTTCAAGCTGTTGCCAAGTA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR TCA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTTCAATCTGCAATAGCTaGATAAGCAGTGTGAATACC +
Preference number: 4 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGSICNS*ISSVNT
Trigger: GGTATTCACACTGCTTATTCAGCTATTGCAGATTGA...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp GGTTGGGCCCCAGCTGCCTGGCTGGCCGCCAGAGAGGAAGCCTTCTaGTCCAAGTCCTGTTTCTGGAGGAGGAGGCTGGACAATGCCCGC +
Preference number: 5 (lower is better)
Translates to: GWAPAAWLAAREEAF*SKSCFWRRRLDNAR
Trigger: GCGGGCATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGAGCAGAAGGCTTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TGCGGCTGGGTGTTCCGGGTGCCAGGCTGGAGCAGTGCAGGGGGCTaGCTTTTCCTCTCTCGAACCACCTCCATGCAGCCCGCAGTATCA +
Preference number: 5 (lower is better)
Translates to: CGWVFRVPGWSSAGG*LFLSRTTSMQPAVS
Trigger: TGATACTGCGGGCTGCATGGAGGTGGTTCGAGAGAGGAAAAGCCAGCCCCCTGCACTGCTCCAGCCTGGCACCCGGAACACCCAGCCGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp ATTGCCTCTGTACCAGCTCCAGGGAAGCTTGTAGGGCTCCAGCCTTaGGATCAGGTTGGGCCCCAGCTGCCTGGCTGGCCGCCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: IASVPAPGKLVGLQP*DQVGPQLPGWPPER
Trigger: CCTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCTGGAGCCCTACAAGCTTCCCTGGAGCTGGTACAGAGGCAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp GTAGGGCTCCAGCCTTGGGATCAGGTTGGGCCCCAGCTGCCTGGCTaGCCGCCAGAGAGGAAGCCTTCTGCTCCAAGTCCTGTTTCTGGA +
Preference number: 5 (lower is better)
Translates to: VGLQPWDQVGPQLPG*PPERKPSAPSPVSG
Trigger: TCCAGAAACAGGACTTGGAGCAGAAGGCTTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCTGGAGCCCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTAGCCTTGGGATCAGGTaGGGCCCCAGCTGCCTGGCT +
Preference number: 5 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSSLGIR*GPSCLA
Trigger: AGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCT...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTGGCTGCTGGGCTTGCTaGCACTCTGCAGGCCATGCA +
Preference number: 5 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPGCWAC*HSAGHA
Trigger: TGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCC...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCCTGGGGCTGCTGGGCTaGCTTGCACTCTGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESLGLLG*LALCRP
Trigger: TGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAG...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TTGCCAGGGGCTGTCCACTTACTGGTGGCTGCACAGACAGCTGAGTaGGGCTGGGAGCAGCTCGAAGAATGGGCAGGACCTTGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: LPGAVHLLVAAQTAE*GWEQLEEWAGPWAG
Trigger: GCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGCTCCCAGCCTCACTCAGCTGTCTGTGCAGCCACCAGTAAGTGGACAGCCCCTGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp CCAGAGACGCCTCCAGCTCCACATCTGAGTTTTCACTGCCGCTGCTaGCGTCGCTGCCACTGCTGCTGCCGTAGTCTTCACTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: PETPPAPHLSFHCRC*RRCHCCCRSLHCCC
Trigger: GCAGCAGCAGTGAAGACTACGGCAGCAGCAGTGGCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAGGCGTCTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp ACGGAGCCGCTTCTCCCGAAGCAGCTCAGAAACAGTCTTAGGCTTTaGCCGGAGGCCACGTGGGGCTGCTACAGGGACTTGGAAGGGGGT +
Preference number: 5 (lower is better)
Translates to: TEPLLPKQLRNSLRL*PEATWGCYRDLEGG
Trigger: ACCCCCTTCCAAGTCCCTGTAGCAGCCCCACGTGGCCTCCGGCCAAAGCCTAAGACTGTTTCTGAGCTGCTTCGGGAGAAGCGGCTCCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TGGCTGGCCGCCAGAGAGGAAGCCTTCTGCTCCAAGTCCTGTTTCTaGAGGAGGAGGCTGGACAATGCCCGCAAGCTGCACAGGGAAGGG +
Preference number: 5 (lower is better)
Translates to: WLAAREEAFCSKSCF*RRRLDNARKLHREG
Trigger: CCCTTCCCTGTGCAGCTTGCGGGCATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGAGCAGAAGGCTTCCTCTCTGGCGGCCAGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGGGAGACAGCAGGGTGTaGTGGGTAGCACCCTGTCCC +
Preference number: 5 (lower is better)
Translates to: RLGPCLLPSESWILDPLTGDSRV*WVAPCP
Trigger: GGGACAGGGTGCTACCCACAACACCCTGCTGTCTCC...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTGCAGGCTGGACTTGGTaGCCAGGGGCTGTCCACTTA +
Preference number: 5 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPAGWTW*PGAVHL
Trigger: TAAGTGGACAGCCCCTGGCAACCAAGTCCAGCCTGC...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCGGCTGCTGGGCTTGCTaGCACTCTGCAGGCCATGCA +
Preference number: 5 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESGCWAC*HSAGHA
Trigger: TGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCC...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp CCGAAGCAGCTCAGAAACAGTCTTAGGCTTTGGCCGGAGGCCACGTaGGGCTGCTACAGGGACTTGGAAGGGGGTAGCCTCAGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: PKQLRNSLRLWPEAT*GCYRDLEGGSLSPA
Trigger: TGCAGGACTGAGGCTACCCCCTTCCAAGTCCCTGTAGCAGCCCCACGTGGCCTCCGGCCAAAGCCTAAGACTGTTTCTGAGCTGCTTCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTGTAGCGGTCTCTGCATaGGGCATCGCTCCTACCTGG +
Preference number: 5 (lower is better)
Translates to: GPCLLPSESWILDPLTPCVAVSA*GIAPTW
Trigger: CCAGGTAGGAGCGATGCCCAATGCAGAGACCGCTAC...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGGAGACAGCAGGGTGTaGTGGGTAGCACCCTGTCCC +
Preference number: 5 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFGDSRV*WVAPCP
Trigger: GGGACAGGGTGCTACCCACAACACCCTGCTGTCTCC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGGTCTCCGGGGAGCTaGTGTGCAGGCCAGGTTGAT +
Preference number: 5 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVRSPGS*CAGQVD
Trigger: ATCAACCTGGCCTGCACACAAGCTCCCCGGAGACCT...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGTTCCCCCGTCATGCTaGGGAGGCAGCCTGTGTTGT +
Preference number: 5 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSVPPSC*GGSLCC
Trigger: ACAACACAGGCTGCCTCCCAAGCATGACGGGGGAAC...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGCAGGCTGGACTTGGTaGCCAGGGGCTGTCCACTTA +
Preference number: 5 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSAGWTW*PGAVHL
Trigger: TAAGTGGACAGCCCCTGGCAACCAAGTCCAGCCTGC...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGGGTTGTCCCGGAATaGCCTCTGTACCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPWVVPE*PLYQLQ
Trigger: CTGGAGCTGGTACAGAGGCAATTCCGGGACAACCCA...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TGGCTGAGATCCCACCCACCGGCCAGGAGCCAGAAGGACTTGAACTaGCCATCACCGGCGCCACAGGTACAGAGAGTTCTACACTGGACG +
Preference number: 5 (lower is better)
Translates to: WLRSHPPARSQKDLN*PSPAPQVQRVLHWT
Trigger: CGTCCAGTGTAGAACTCTCTGTACCTGTGGCGCCGGTGATGGTCAGTTCAAGTCCTTCTGGCTCCTGGCCGGTGGGTGGGATCTCAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp CTGGAATTTCTGCAGGCACTGGCACAACCTTCCAGGAGACCCAAGTaGTTCCAGAAGACAGGTGGGCCTGAGCCACAGGCAGCGAGCGCT +
Preference number: 5 (lower is better)
Translates to: LEFLQALAQPSRRPK*FQKTGGPEPQAASA
Trigger: AGCGCTCGCTGCCTGTGGCTCAGGCCCACCTGTCTTCTGGAAGCACTTGGGTCTCCTGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CCA 90 bp CACAGGTACAGAGAGTTCTACACTGGACGTTGCAGGGCCTACTACTaGGGAACCATGGGGGACTGGCAGCAGAGGGGGCTGGAGGATCAC +
Preference number: 5 (lower is better)
Translates to: HRYREFYTGRCRAYY*GTMGDWQQRGLEDH
Trigger: GTGATCCTCCAGCCCCCTCTGCTGCCAGTCCCCCATGGTTCCCCAGTAGTAGGCCCTGCAACGTCCAGTGTAGAACTCTCTGTACCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTGTAGCGGTCTCTGCATaGGGCATCGCTCCTACCTGG +
Preference number: 5 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASVAVSA*GIAPTW
Trigger: CCAGGTAGGAGCGATGCCCAATGCAGAGACCGCTAC...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGTTCCCCCGTCATGCTaGGGAGGCAGCCTGTGTTGT +
Preference number: 5 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRVPPSC*GGSLCC
Trigger: ACAACACAGGCTGCCTCCCAAGCATGACGGGGGAAC...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCGTTCTACACTGGACGTaGCAGGGCCTACTACTGGGG +
Preference number: 5 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESVLHWT*QGLLLG
Trigger: CCCCAGTAGTAGGCCCTGCAACGTCCAGTGTAGAAC...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTAGAATGGGCAGGACCTaGGGCAGGCTCTGCTTCTGG +
Preference number: 5 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASRMGRT*GRLCFW
Trigger: CCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCT...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTAGAATGGGCAGGACCTaGGGCAGGCTCTGCTTCTGG +
Preference number: 5 (lower is better)
Translates to: VVYCFWAGLGPASCLVRARMGRT*GRLCFW
Trigger: CCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCT...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTCACCACAGCTGGCACTaGGACAGAGAGCAACTTCTG +
Preference number: 5 (lower is better)
Translates to: WAGLGPASCLVRAGFWTPHHSWH*DREQLL
Trigger: CAGAAGTTGCTCTCTGTCCAAGTGCCAGCTGTGGTG...AGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTTGGGTTGTCCCGGAATaGCCTCTGTACCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: GPCLLPSESWILDPLTPCWVVPE*PLYQLQ
Trigger: CTGGAGCTGGTACAGAGGCAATTCCGGGACAACCCA...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp TACTCTTCTCCAGAGACGCCTCCAGCTCCACATCTGAGTTTTCACTaGCGCTGCTGCCGTCGCTGCCACTGCTGCTGCCGTAGTCTTCAC +
Preference number: 5 (lower is better)
Translates to: YSSPETPPAPHLSFH*RCCRRCHCCCRSLH
Trigger: GTGAAGACTACGGCAGCAGCAGTGGCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAGGCGTCTCTGGAGAAGAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp GGACTTGGAGCTCTCTGTACAGGGTCTGGGGCTGCTGGGCTTGCTTaGACTCTGCAGGCCATGCAGTCCAACTGTCTAGCCCTATCCTTG +
Preference number: 5 (lower is better)
Translates to: GLGALCTGSGAAGLA*TLQAMQSNCLALSL
Trigger: CAAGGATAGGGCTAGACAGTTGGACTGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGAGCTCCAAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp GGAGCAGCTCGAAGAATGGGCAGGACCTTGGGCAGGCTCTGCTTCTaGGATGTGGTAGAGGTCTGTCCTAGAGTACTCAGATGGCCGCCT +
Preference number: 5 (lower is better)
Translates to: GAARRMGRTLGRLCF*DVVEVCPRVLRWPP
Trigger: AGGCGGCCATCTGAGTACTCTAGGACAGACCTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp GAGAGGAAGCCTTCTGCTCCAAGTCCTGTTTCTGGAGGAGGAGGCTaGACAATGCCCGCAAGCTGCACAGGGAAGGGGGATGATAGGGCA +
Preference number: 5 (lower is better)
Translates to: ERKPSAPSPVSGGGG*TMPASCTGKGDDRA
Trigger: TGCCCTATCATCCCCCTTCCCTGTGCAGCTTGCGGGCATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGAGCAGAAGGCTTCCTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGTGTGGCTGGCTCTCTTaGCAGTTTGTTCCCCCGTCA +
Preference number: 5 (lower is better)
Translates to: RLGPCLLPSESWILDPLTCGWLS*QFVPPS
Trigger: TGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACA...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGTTCTACACTGGACGTaGCAGGGCCTACTACTGGGG +
Preference number: 5 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAVLHWT*QGLLLG
Trigger: CCCCAGTAGTAGGCCCTGCAACGTCCAGTGTAGAAC...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGGTTGTGAGAACCCAGTaGACAGGCAGGCTGGACTTG +
Preference number: 5 (lower is better)
Translates to: RLGPCLLPSESWILDPLTVVRTQ*TGRLDL
Trigger: CAAGTCCAGCCTGCCTGTCAACTGGGTTCTCACAAC...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTGTTGTGAGAACCCAGTaGACAGGCAGGCTGGACTTG +
Preference number: 5 (lower is better)
Translates to: GPCLLPSESWILDPLTPCVVRTQ*TGRLDL
Trigger: CAAGTCCAGCCTGCCTGTCAACTGGGTTCTCACAAC...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCGGGTACAAAAGCACCTaGGCACCCCTTCAGCCATGT +
Preference number: 5 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESGYKST*APLQPC
Trigger: ACATGGCTGAAGGGGTGCCAAGGTGCTTTTGTACCC...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGGCTGCTGGGCTaGCTTGCACTCTGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: SACSFLASRLLAEGCVLLLGLLG*LALCRP
Trigger: TGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAG...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp GGAGACAGCAGGGTGTTGTGGGTAGCACCCTGTCCCTTCTCTCTGTaGCTGGCTGGTGATCAGCCTGGTAGGAACCCACAGGTCAATGTC +
Preference number: 5 (lower is better)
Translates to: GDSRVLWVAPCPFSL*LAGDQPGRNPQVNV
Trigger: GACATTGACCTGTGGGTTCCTACCAGGCTGATCACCAGCCAGTCACAGAGAGAAGGGACAGGGTGCTACCCACAACACCCTGCTGTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp AGGCTGGGAGCAGCTCGAAGAATGGGCAGGACCTTGGGCAGGCTCTaGTTCTGGGATGTGGTAGAGGTCTGTCCTAGAGTACTCAGATGG +
Preference number: 5 (lower is better)
Translates to: RLGAARRMGRTLGRL*FWDVVEVCPRVLRW
Trigger: CCATCTGAGTACTCTAGGACAGACCTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGCTCCCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp CTGCGGCTTGTCCCAAGTTCCTCTGCAACCAAGTGCCACTCCAGGTaGCCATGTGTGGCAGCGATGGCCTTCAGCCTCTCTACTTCTTCT +
Preference number: 5 (lower is better)
Translates to: LRLVPSSSATKCHSR*PCVAAMAFSLSTSS
Trigger: AGAAGAAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGGAACTTGGGACAAGCCGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TTTCGGGCCCAGGTGTGGGTGGTATTTCCTGGCCCTGAGGTCCCTTaGGTTCTGTGTCTGTACTGGCTGGAGGCTGTTCCAGAAAAGCAG +
Preference number: 5 (lower is better)
Translates to: FRAQVWVVFPGPEVP*VLCLYWLEAVPEKQ
Trigger: CTGCTTTTCTGGAACAGCCTCCAGCCAGTACAGACACAGAACCCAAGGGACCTCAGGGCCAGGAAATACCACCCACACCTGGGCCCGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp GGGAAAGGAGACTTAGGTCCAAAGCTGCCTTTTCGGGCCCAGGTGTaGGTGGTATTTCCTGGCCCTGAGGTCCCTTGGGTTCTGTGTCTG +
Preference number: 5 (lower is better)
Translates to: GKGDLGPKLPFRAQV*VVFPGPEVPWVLCL
Trigger: CAGACACAGAACCCAAGGGACCTCAGGGCCAGGAAATACCACCCACACCTGGGCCCGAAAAGGCAGCTTTGGACCTAAGTCTCCTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTTCTTCAGGGAGAGCTTaGTCCTTGGGGTCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: VVYCFWAGLGPASCLVRASSGRA*SLGSSS
Trigger: TGAGGAGGACCCCAAGGACAAAGCTCTCCCTGAAGA...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATCTTCAGGGAGAGCTTaGTCCTTGGGGTCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRSSGRA*SLGSSS
Trigger: TGAGGAGGACCCCAAGGACAAAGCTCTCCCTGAAGA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTCTGCCATCCTTCACCTaGGGGCATTTGGTTCCAGAC +
Preference number: 5 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASLPSFT*GHLVPD
Trigger: GTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAG...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGCCTTGTTCCCAGTGCTTCCACTaGGTCACCAAGAGCTGTTCA +
Preference number: 5 (lower is better)
Translates to: GPCLLPSESWILDPLTPCSQCFH*VTKSCS
Trigger: TGAACAGCTCTTGGTGACCAAGTGGAAGCACTGGGA...ACAAGGCGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGAAAGGCACTGCGGCTaGTCCCAAGTTCCTCTGCAA +
Preference number: 5 (lower is better)
Translates to: VVYCFWAGLGPASCLVRAERHCG*SQVPLQ
Trigger: TTGCAGAGGAACTTGGGACAAGCCGCAGTGCCTTTC...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGGGGAGGCAGCCTGTGTaGTTCTTGGCATTAGAGGAT +
Preference number: 5 (lower is better)
Translates to: RLGPCLLPSESWILDPLTGRQPV*FLALED
Trigger: ATCCTCTAATGCCAAGAACAACACAGGCTGCCTCCC...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTTGTGGCTGGCTCTCTTaGCAGTTTGTTCCCCCGTCA +
Preference number: 5 (lower is better)
Translates to: VVYCFWAGLGPASCLVRACGWLS*QFVPPS
Trigger: TGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACA...AGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCAGAAAAGCAGGAGTCTaGGCAGGGGAAGGCAGCTGT +
Preference number: 5 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFRKAGV*AGEGSC
Trigger: ACAGCTGCCTTCCCCTGCCAAGACTCCTGCTTTTCT...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCGGGTACAAAAGCACCTaGGCACCCCTTCAGCCATGT +
Preference number: 5 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFGYKST*APLQPC
Trigger: ACATGGCTGAAGGGGTGCCAAGGTGCTTTTGTACCC...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp CTTCTGAGTTGTGAGAACCCAGTTGACAGGCAGGCTGGACTTGGTTaGCAGGGGCTGTCCACTTACTGGTGGCTGCACAGACAGCTGAGT +
Preference number: 5 (lower is better)
Translates to: LLSCENPVDRQAGLG*QGLSTYWWLHRQLS
Trigger: ACTCAGCTGTCTGTGCAGCCACCAGTAAGTGGACAGCCCCTGGCAACCAAGTCCAGCCTGCCTGTCAACTGGGTTCTCACAACTCAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp GTGGTATTTCCTGGCCCTGAGGTCCCTTGGGTTCTGTGTCTGTACTaGCTGGAGGCTGTTCCAGAAAAGCAGGAGTCTTGGCAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: VVFPGPEVPWVLCLY*LEAVPEKQESWQGK
Trigger: CTTCCCCTGCCAAGACTCCTGCTTTTCTGGAACAGCCTCCAGCCAGTACAGACACAGAACCCAAGGGACCTCAGGGCCAGGAAATACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTAGGTCTCCGGGGAGCTaGTGTGCAGGCCAGGTTGAT +
Preference number: 5 (lower is better)
Translates to: SACSFLASRLLAEGCVLLRSPGS*CAGQVD
Trigger: ATCAACCTGGCCTGCACACAAGCTCCCCGGAGACCT...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TCTCGAACCACCTCCATGCAGCCCGCAGTATCAATCTGCAATAGCTaGATAAGCAGTGTGAATACCGGAGTGCTGGCCAGGCGGGCACAC +
Preference number: 5 (lower is better)
Translates to: SRTTSMQPAVSICNS*ISSVNTGVLARRAH
Trigger: GTGTGCCCGCCTGGCCAGCACTCCGGTATTCACACTGCTTATTCAGCTATTGCAGATTGATACTGCGGGCTGCATGGAGGTGGTTCGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TTAGCTGCAGACAGGTCTCGGGGTCTTCAGGGAGAGCTTTGTCCTTaGGGTCCTCCTCATCATTGCTGCTCTCACTCGACCCTTCCTCTT +
Preference number: 5 (lower is better)
Translates to: LAADRSRGLQGELCP*GPPHHCCSHSTLPL
Trigger: AAGAGGAAGGGTCGAGTGAGAGCAGCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCCCTGAAGACCCCGAGACCTGTCTGCAGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TGCTTCCACTTGGTCACCAAGAGCTGTTCAAAGGCCTTGATTCCCTaGGTAGCCTTCTCCCGTGTTTCTTCGTTGGCAGGAGGCCCCACT +
Preference number: 5 (lower is better)
Translates to: CFHLVTKSCSKALIP*VAFSRVSSLAGGPT
Trigger: AGTGGGGCCTCCTGCCAACGAAGAAACACGGGAGAAGGCTACCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACCAAGTGGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TCCCAAGTTCCTCTGCAACCAAGTGCCACTCCAGGTGGCCATGTGTaGCAGCGATGGCCTTCAGCCTCTCTACTTCTTCTGTGCTCCATT +
Preference number: 5 (lower is better)
Translates to: SQVPLQPSATPGGHV*QRWPSASLLLLCSI
Trigger: AATGGAGCACAGAAGAAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGGAACTTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTTCTTCTGTCCACTCCTaGCGTTTCAGGGTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: AEGCVLLLGRLGPCLLPSSSVHS*RFRVLL
Trigger: CAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGA...ACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp CTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGTCTTCTGTCCACTCCTaGCGTTTCAGGGTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: LRVVYCFWAGLGPASCLVSSVHS*RFRVLL
Trigger: CAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGA...CACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCATTCAGAAGCGATTCTaGCCCAGTGACCAACACCAT +
Preference number: 5 (lower is better)
Translates to: GCVLLLGRLGPCLLPSESIQKRF*PSDQHH
Trigger: ATGGTGTTGGTCACTGGGCAAGAATCGCTTCTGAAT...GCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTGGACCCCTTGACGTTCCTTGTGGTGATTTaGAGAGGCATCCTGAGTGCA +
Preference number: 5 (lower is better)
Translates to: RLGPCLLPSESWILDPLTFLVVI*RGILSA
Trigger: TGCACTCAGGATGCCTCTCAAAATCACCACAAGGAA...CGTCAAGGGGTCCAGAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACACCACAGCTGGCACTaGGACAGAGAGCAACTTCTG +
Preference number: 5 (lower is better)
Translates to: QVACDHVATAITTACRSLHHSWH*DREQLL
Trigger: CAGAAGTTGCTCTCTGTCCAAGTGCCAGCTGTGGTG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TGGGCTGAAGCAGACGTTGTAGGCGGTCACTCACTACAGACTTCCTaGGCAAGGCTTTCTCCCAGTGCTTCCACTTGGTCACCAAGAGCT +
Preference number: 5 (lower is better)
Translates to: WAEADVVGGHSLQTS*ARLSPSASTWSPRA
Trigger: AGCTCTTGGTGACCAAGTGGAAGCACTGGGAGAAAGCCTTGCTCAGGAAGTCTGTAGTGAGTGACCGCCTACAACGTCTGCTTCAGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp GGTATGGGATATGGTTCCCAACTCGCATCTCTTGGACCAGCTGGGTaGGCATGTGGTCTTCCTCTTCTGTCCACTCCTTGCGTTTCAGGG +
Preference number: 5 (lower is better)
Translates to: GMGYGSQLASLGPAG*ACGLPLLSTPCVSG
Trigger: CCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS TCA 90 bp GAACTAGGGAGGAGTGGCTGCTTCGGTCTTTCCTTCATCAGTGTGTaGCTCTTGCAGGCCGGATCCTTCAAACTTGCTGAGTGGGTGTCC +
Preference number: 5 (lower is better)
Translates to: ELGRSGCFGLSFISV*LLQAGSFKLAEWVS
Trigger: GGACACCCACTCAGCAAGTTTGAAGGATCCGGCCTGCAAGAGTCACACACTGATGAAGGAAAGACCGAAGCAGCCACTCCTCCCTAGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATTCCTTGTGGTGATTTaGAGAGGCATCCTGAGTGCA +
Preference number: 5 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRFLVVI*RGILSA
Trigger: TGCACTCAGGATGCCTCTCAAAATCACCACAAGGAA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTAGGGAGGCAGCCTGTGTaGTTCTTGGCATTAGAGGAT +
Preference number: 5 (lower is better)
Translates to: QVACDHVATAITTACRSLGRQPV*FLALED
Trigger: ATCCTCTAATGCCAAGAACAACACAGGCTGCCTCCC...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTAGAAAAGCAGGAGTCTaGGCAGGGGAAGGCAGCTGT +
Preference number: 5 (lower is better)
Translates to: SACSFLASRLLAEGCVLLRKAGV*AGEGSC
Trigger: ACAGCTGCCTTCCCCTGCCAAGACTCCTGCTTTTCT...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp AGGCGGTCACTCACTACAGACTTCCTGAGCAAGGCTTTCTCCCAGTaGTTCCACTTGGTCACCAAGAGCTGTTCAAAGGCCTTGATTCCC +
Preference number: 5 (lower is better)
Translates to: RRSLTTDFLSKAFSQ*FHLVTKSCSKALIP
Trigger: GGGAATCAAGGCCTTTGAACAGCTCTTGGTGACCAAGTGGAAGCACTGGGAGAAAGCCTTGCTCAGGAAGTCTGTAGTGAGTGACCGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp TCTGTGCTCCATTCCTGCTTACTGATGCTTGGATGCTCAGAACTCTaGCAGAACTTCCGGATCTCCTCTGCACTGCGGGCTCCTTCAAAG +
Preference number: 5 (lower is better)
Translates to: SVLHSCLLMLGCSEL*QNFRISSALRAPSK
Trigger: CTTTGAAGGAGCCCGCAGTGCAGAGGAGATCCGGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp GCAGCGATGGCCTTCAGCCTCTCTACTTCTTCTGTGCTCCATTCCTaGTTACTGATGCTTGGATGCTCAGAACTCTGCCAGAACTTCCGG +
Preference number: 5 (lower is better)
Translates to: AAMAFSLSTSSVLHS*LLMLGCSELCQNFR
Trigger: CCGGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGCTGAAGGCCATCGCTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp TCTTCCTCTGCAGATGCTGTTTCTTCCTGGCCAAGATCTTCCACTTaGTCAGACACTGGGAGCCTGACCGATGGGGCAATTCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: SSSADAVSSWPRSST*SDTGSLTDGAIQKR
Trigger: TCGCTTCTGAATTGCCCCATCGGTCAGGCTCCCAGTGTCTGAGCAAGTGGAAGATCTTGGCCAGGAAGAAACAGCATCTGCAGAGGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CCA 90 bp CTGCGGGCTCCTTCAAAGTTAATATTGGAAATCTTCTCCCAGTCGTaGCTGTCTAGCCGGTTCCCCAACAATGCTTCCTCTGGGAGCTGG +
Preference number: 5 (lower is better)
Translates to: LRAPSKLILEIFSQS*LSSRFPNNASSGSW
Trigger: CCAGCTCCCAGAGGAAGCATTGTTGGGGAACCGGCTAGACAGCCACGACTGGGAGAAGATTTCCAATATTAACTTTGAAGGAGCCCGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp CTGCATGGAGTCTCTCCCTTCCATGAAGTAGACGATCTTGCGGTATaGGATATGGTTCCCAACTCGCATCTCTTGGACCAGCTGGGTGAG +
Preference number: 5 (lower is better)
Translates to: LHGVSPFHEVDDLAV*DMVPNSHLLDQLGE
Trigger: CTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACCGCAAGATCGTCTACTTCATGGAAGGGAGAGACTCCATGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS-3UTR CAA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGACGTTTCAGGGTTTTGTaGTACTGCTGGAATTTCTGC +
Preference number: 5 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRRFRVL*YCWNFC
Trigger: GCAGAAATTCCAGCAGTACAACAAAACCCTGAAACG...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTAGCCTTGGGATCAGGTaGGGCCCCAGCTGCCTGGCT +
Preference number: 5 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGSLGIR*GPSCLA
Trigger: AGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCT...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 90 bp GTCCACTCCTTGCGTTTCAGGGTTTTGTTGTACTGCTGGAATTTCTaGAGGCACTGGCACAACCTTCCAGGAGACCCAAGTGCTTCCAGA +
Preference number: 5 (lower is better)
Translates to: VHSLRFRVLLYCWNF*RHWHNLPGDPSASR
Trigger: TCTGGAAGCACTTGGGTCTCCTGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CCA 90 bp CATTTGGTTCCAGACAGATCAAACAGGATCTCTTCCTGCTGCTCCTaGTTCTGGGCTAGCAACTGGCTAACCTCTGCTAGCTTTTCCCGG +
Preference number: 5 (lower is better)
Translates to: HLVPDRSNRISSCCS*FWASNWLTSASFSR
Trigger: CCGGGAAAAGCTAGCAGAGGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp GGCCCCACTCCAGTAACCTTGTCCTTGAAGTATGGCTTCAGGAAGTaGCCTATGTACATGTATGAGGGCAGACTTCTGCCATCCTTCACC +
Preference number: 5 (lower is better)
Translates to: GPTPVTLSLKYGFRK*PMYMYEGRLLPSFT
Trigger: GGTGAAGGATGGCAGAAGTCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTTACTGGAGTGGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAGCTGGATTCTTGCGTTTCAGGGTTTaGTTGTACTGCTGGAATTTC +
Preference number: 5 (lower is better)
Translates to: YCFWAGLGPASCLVRAGFLRFRV*LYCWNF
Trigger: GAAATTCCAGCAGTACAACAAAACCCTGAAACGCAA...GAATCCAGCTCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGATTGCGTTTCAGGGTTTaGTTGTACTGCTGGAATTTC +
Preference number: 5 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRLRFRV*LYCWNF
Trigger: GAAATTCCAGCAGTACAACAAAACCCTGAAACGCAA...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp CGGCTCTGTTTTTCGTGTAAGTACTCCAGCTTCAGCAATTTGGGCTaGAGCAGACGTTGTAGGCGGTCACTCACTACAGACTTCCTGAGC +
Preference number: 5 (lower is better)
Translates to: RLCFSCKYSSFSNLG*SRRCRRSLTTDFLS
Trigger: GCTCAGGAAGTCTGTAGTGAGTGACCGCCTACAACGTCTGCTTCAGCCCAAATTGCTGAAGCTGGAGTACTTACACGAAAAACAGAGCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TGGCCTTCAGCCTCTCTACTTCTTCTGTGCTCCATTCCTGCTTACTaGTGCTTGGATGCTCAGAACTCTGCCAGAACTTCCGGATCTCCT +
Preference number: 5 (lower is better)
Translates to: WPSASLLLLCSIPAY*CLDAQNSARTSGSP
Trigger: AGGAGATCCGGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGCTGAAGGCCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TCTTGGTCCAACGGTAGATCAGCTGCATGGAGTCTCTCCCTTCCATaGAGTAGACGATCTTGCGGTATGGGATATGGTTCCCAACTCGCA +
Preference number: 5 (lower is better)
Translates to: SWSNGRSAAWSLSLP*SRRSCGMGYGSQLA
Trigger: TGCGAGTTGGGAACCATATCCCATACCGCAAGATCGTCTACTTCATGGAAGGGAGAGACTCCATGCAGCTGATCTACCGTTGGACCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS GCA 90 bp TCTTCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTTGTTGTACTaGTGGAATTTCTGCAGGCACTGGCACAACCTTCCAGGAGACCCA +
Preference number: 5 (lower is better)
Translates to: SSSSVHSLRFRVLLY*WNFCRHWHNLPGDP
Trigger: TGGGTCTCCTGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CCA 90 bp ACATGTATGAGGGCAGACTTCTGCCATCCTTCACCTTGGGGCATTTaGTTCCAGACAGATCAAACAGGATCTCTTCCTGCTGCTCCTGGT +
Preference number: 5 (lower is better)
Translates to: TCMRADFCHPSPWGI*FQTDQTGSLPAAPG
Trigger: ACCAGGAGCAGCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp CAGCCTCTCTACTTCTTCTGTGCTCCATTCCTGCTTACTGATGCTTaGATGCTCAGAACTCTGCCAGAACTTCCGGATCTCCTCTGCACT +
Preference number: 5 (lower is better)
Translates to: QPLYFFCAPFLLTDA*MLRTLPELPDLLCT
Trigger: AGTGCAGAGGAGATCCGGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp ATATGGTTCCCAACTCGCATCTCTTGGACCAGCTGGGTGAGCATGTaGTCTTCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: IWFPTRISWTSWVSM*SSSSVHSLRFRVLL
Trigger: CAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CCA 90 bp TCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTTGTTGTACTGCTaGAATTTCTGCAGGCACTGGCACAACCTTCCAGGAGACCCAAGT +
Preference number: 5 (lower is better)
Translates to: SSSVHSLRFRVLLYC*NFCRHWHNLPGDPS
Trigger: ACTTGGGTCTCCTGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS-3UTR CAA 90 bp CAGGTAGCCTGTGATCACGTGGCCACTGCTATCACCACAGCCTGTAGATCGCTACGTTTCAGGGTTTTGTaGTACTGCTGGAATTTCTGC +
Preference number: 5 (lower is better)
Translates to: QVACDHVATAITTACRSLRFRVL*YCWNFC
Trigger: GCAGAAATTCCAGCAGTACAACAAAACCCTGAAACG...TAGCGATCTACAGGCTGTGGTGATAGCAGTGGCCACGTGATCACAGGCTACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp GTCTTCTTGCTGAGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTATACTTGGCAACAGCTaGAAGCAATTTAGCATCTTC +
Preference number: 5 (lower is better)
Translates to: VFLLRVVYCFWAGLGPASILGNS*KQFSIF
Trigger: GAAGATGCTAAATTGCTTCAAGCTGTTGCCAAGTAT...AGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCTCAGCAAGAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp AGGGTTGTGTACTGCTTCTGGGCAGGCTTGGGCCCTGCCTCTTGCCTAGTGAGAATACTTGGCAACAGCTaGAAGCAATTTAGCATCTTC +
Preference number: 5 (lower is better)
Translates to: RVVYCFWAGLGPASCLVRILGNS*KQFSIF
Trigger: GAAGATGCTAAATTGCTTCAAGCTGTTGCCAAGTAT...TCTCACTAGGCAAGAGGCAGGGCCCAAGCCTGCCCAGAAGCAGTACACAACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp TCAGCCTGCAGCTTTCTGGCTTCCCGTCTTCTTGCTGAGGGTTGTGTACTGCTTATTCAGAAGCGATTCTaGCCCAGTGACCAACACCAT +
Preference number: 5 (lower is better)
Translates to: SACSFLASRLLAEGCVLLIQKRF*PSDQHH
Trigger: ATGGTGTTGGTCACTGGGCAAGAATCGCTTCTGAAT...AAGCAGTACACAACCCTCAGCAAGAAGACGGGAAGCCAGAAAGCTGCAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp CTTGTCCTTGAAGTATGGCTTCAGGAAGTGGCCTATGTACATGTATaGGGGCAGACTTCTGCCATCCTTCACCTTGGGGCATTTGGTTCC +
Preference number: 5 (lower is better)
Translates to: LVLEVWLQEVAYVHV*GQTSAILHLGAFGS
Trigger: GGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp AGACTCGGCTCTGTTTTTCGTGTAAGTACTCCAGCTTCAGCAATTTaGGCTGAAGCAGACGTTGTAGGCGGTCACTCACTACAGACTTCC +
Preference number: 5 (lower is better)
Translates to: RLGSVFRVSTPASAI*AEADVVGGHSLQTS
Trigger: GGAAGTCTGTAGTGAGTGACCGCCTACAACGTCTGCTTCAGCCCAAATTGCTGAAGCTGGAGTACTTACACGAAAAACAGAGCCGAGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 90 bp TGGGAGCCTGACCGATGGGGCAATTCAGAAGCGATTCTTGCCCAGTaGCCAACACCATATTTCTCTATTAGCTGGATCAGCTGTTGTTCT +
Preference number: 5 (lower is better)
Translates to: WEPDRWGNSEAILAQ*PTPYFSISWISCCS
Trigger: AGAACAACAGCTGATCCAGCTAATAGAGAAATATGGTGTTGGTCACTGGGCAAGAATCGCTTCTGAATTGCCCCATCGGTCAGGCTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS-3UTR CAA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTCTGCCATCCTTCACCTaGGGGCATTTGGTTCCAGAC +
Preference number: 5 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGLPSFT*GHLVPD
Trigger: GTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAG...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTGAAAGGCACTGCGGCTaGTCCCAAGTTCCTCTGCAA +
Preference number: 5 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGERHCG*SQVPLQ
Trigger: TTGCAGAGGAACTTGGGACAAGCCGCAGTGCCTTTC...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp TCTGCTTCAGAGTCTGAACTGAGACTGGATTCAGAGACTTCAAAGTaGACGCTGGTGGATCCAGGATACAAAATCCTTTCAAGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: SASESELRLDSETSK*TLVDPGYKILSSSW
Trigger: CCAGGAGCTTGAAAGGATTTTGTATCCTGGATCCACCAGCGTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 90 bp AAGTGGACGCTGGTGGATCCAGGATACAAAATCCTTTCAAGCTCCTaGATCTCCTGTGTTATTTTCTCTCGTTCGGCGTCTATGTCCATG +
Preference number: 5 (lower is better)
Translates to: KWTLVDPGYKILSSS*ISCVIFSRSASMSM
Trigger: CATGGACATAGACGCCGAACGAGAGAAAATAACACAGGAGATCCAGGAGCTTGAAAGGATTTTGTATCCTGGATCCACCAGCGTCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114115.9
CDS-3UTR CAA 90 bp ATTAGGCATTTCCTTTATTCCCTCACATACACGGCCCCAAGTCTGTTAACAGGTAAACCTCACCAGGACTaGGAGCTCTCTGTACAGGGT +
Preference number: 5 (lower is better)
Translates to: IRHFLYSLTYTAPSLLTGKPHQD*ELSVQG
Trigger: ACCCTGTACAGAGAGCTCCAAGTCCTGGTGAGGTTT...ACCTGTTAACAGACTTGGGGCCGTGTATGTGAGGGAATAAAGGAAATGCCTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp AGGATGCCTGCAGGAGATGCGGCTGGGTGTTCCGGGTaGCAGGCTGGAGCAGTGCAGGGGGCTGGCTTTTCC +
Preference number: 6 (lower is better)
Translates to: RMPAGDAAGCSG*QAGAVQGAGFS
Trigger: GGAAAAGCCAGCCCCCTGCACTGCTCCAGCCTGGCACCCGGAACACCCAGCCGCATCTCCTGCAGGCATCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GTACCAGCTCCAGGGAAGCTTGTAGGGCTCCAGCCTTaGGATCAGGTTGGGCCCCAGCTGCCTGGCTGGCCG +
Preference number: 6 (lower is better)
Translates to: VPAPGKLVGLQP*DQVGPQLPGWP
Trigger: CGGCCAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCTGGAGCCCTACAAGCTTCCCTGGAGCTGGTAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GTGTTCCGGGTGCCAGGCTGGAGCAGTGCAGGGGGCTaGCTTTTCCTCTCTCGAACCACCTCCATGCAGCCC +
Preference number: 6 (lower is better)
Translates to: VFRVPGWSSAGG*LFLSRTTSMQP
Trigger: GGGCTGCATGGAGGTGGTTCGAGAGAGGAAAAGCCAGCCCCCTGCACTGCTCCAGCCTGGCACCCGGAACAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CAGCCTTGGGATCAGGTTGGGCCCCAGCTGCCTGGCTaGCCGCCAGAGAGGAAGCCTTCTGCTCCAAGTCCT +
Preference number: 6 (lower is better)
Translates to: QPWDQVGPQLPG*PPERKPSAPSP
Trigger: AGGACTTGGAGCAGAAGGCTTCCTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp TGTACCAGCTCCAGGGAAGCTTGTAGGGCTCCAGCCTaGGGATCAGGTTGGGCCCCAGCTGCCTGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: CTSSREACRAPA*GSGWAPAAWLA
Trigger: GGCCAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCTGGAGCCCTACAAGCTTCCCTGGAGCTGGTACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp CCCCAGTCGTGGGCGCCCTTTGTGGCTGGCTCTCTTTaGAGTTTGTTCCCCCGTCATGCTTGGGAGGCAGCC +
Preference number: 6 (lower is better)
Translates to: PQSWAPFVAGSL*SLFPRHAWEAA
Trigger: GGCTGCCTCCCAAGCATGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACGACTGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp AATTGCCTCTGTACCAGCTCCAGGGAAGCTTGTAGGGCTCCAGCCTaGGGATCAGGTTGGGCCCCAGCTGCCTGGCTGGCCGCCAGAGAG +
Preference number: 6 (lower is better)
Translates to: NCLCTSSREACRAPA*GSGWAPAAWLAARE
Trigger: CTCTCTGGCGGCCAGCCAGGCAGCTGGGGCCCAACCTGATCCCAAGGCTGGAGCCCTACAAGCTTCCCTGGAGCTGGTACAGAGGCAATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp TACAGGGACTTGGAAGGGGGTAGCCTCAGTCCTGCATaGCCCCAGTCGTGGGCGCCCTTTGTGGCTGGCTCT +
Preference number: 6 (lower is better)
Translates to: YRDLEGGSLSPA*PQSWAPFVAGS
Trigger: AGAGCCAGCCACAAAGGGCGCCCACGACTGGGGTCATGCAGGACTGAGGCTACCCCCTTCCAAGTCCCTGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp GAGGAGACCAGCAGCTGGCTGTTGAGACCAAGAGCCTaGGTGGCCTTCTTGGCATGGGACTCACGGAGCCGC +
Preference number: 6 (lower is better)
Translates to: EETSSWLLRPRA*VAFLAWDSRSR
Trigger: GCGGCTCCGTGAGTCCCATGCCAAGAAGGCCACTCAGGCTCTTGGTCTCAACAGCCAGCTGCTGGTCTCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp TTCTTGGCATTAGAGGATGCCTGCAGGAGATGCGGCTaGGTGTTCCGGGTGCCAGGCTGGAGCAGTGCAGGG +
Preference number: 6 (lower is better)
Translates to: FLALEDACRRCG*VFRVPGWSSAG
Trigger: CCCTGCACTGCTCCAGCCTGGCACCCGGAACACCCAGCCGCATCTCCTGCAGGCATCCTCTAATGCCAAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp ACCCCAGTCGTGGGCGCCCTTTGTGGCTGGCTCTCTTaGCAGTTTGTTCCCCCGTCATGCTTGGGAGGCAGC +
Preference number: 6 (lower is better)
Translates to: TPVVGALCGWLS*QFVPPSCLGGS
Trigger: GCTGCCTCCCAAGCATGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACGACTGGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp CAGGAGACCCAAGTGCTTCCAGAAGACAGGTGGGCCTaGGCCACAGGCAGCGAGCGCTCTGTACAGCAGAAC +
Preference number: 6 (lower is better)
Translates to: QETQVLPEDRWA*ATGSERSVQQN
Trigger: GTTCTGCTGTACAGAGCGCTCGCTGCCTGTGGCTCAGGCCCACCTGTCTTCTGGAAGCACTTGGGTCTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS GCA 72 bp ACGCCTCCAGCTCCACATCTGAGTTTTCACTGCCGCTaGTGCCGTCGCTGCCACTGCTGCTGCCGTAGTCTT +
Preference number: 6 (lower is better)
Translates to: TPPAPHLSFHCR*CRRCHCCCRSL
Trigger: AAGACTACGGCAGCAGCAGTGGCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAGGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp AGGCAGCCTGTGTTGTTCTTGGCATTAGAGGATGCCTaGAGGAGATGCGGCTGGGTGTTCCGGGTGCCAGGC +
Preference number: 6 (lower is better)
Translates to: RQPVLFLALEDA*RRCGWVFRVPG
Trigger: GCCTGGCACCCGGAACACCCAGCCGCATCTCCTGCAGGCATCCTCTAATGCCAAGAACAACACAGGCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp TGGGAGGCAGCCTGTGTTGTTCTTGGCATTAGAGGATaGCTGCAGGAGATGCGGCTGGGTGTTCCGGGTGCC +
Preference number: 6 (lower is better)
Translates to: WEAACVVLGIRG*LQEMRLGVPGA
Trigger: GGCACCCGGAACACCCAGCCGCATCTCCTGCAGGCATCCTCTAATGCCAAGAACAACACAGGCTGCCTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp ACCAGGACTTGGAGCTCTCTGTACAGGGTCTGGGGCTaGTGGGCTTGCTTGCACTCTGCAGGCCATGCAGTC +
Preference number: 6 (lower is better)
Translates to: TRTWSSLYRVWG*WACLHSAGHAV
Trigger: GACTGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGAGCTCCAAGTCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp CTGCAGGCACTGGCACAACCTTCCAGGAGACCCAAGTaGTTCCAGAAGACAGGTGGGCCTGAGCCACAGGCA +
Preference number: 6 (lower is better)
Translates to: LQALAQPSRRPK*FQKTGGPEPQA
Trigger: TGCCTGTGGCTCAGGCCCACCTGTCTTCTGGAAGCACTTGGGTCTCCTGGAAGGTTGTGCCAGTGCCTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CCA 72 bp AGAGAGTTCTACACTGGACGTTGCAGGGCCTACTACTaGGGAACCATGGGGGACTGGCAGCAGAGGGGGCTG +
Preference number: 6 (lower is better)
Translates to: REFYTGRCRAYY*GTMGDWQQRGL
Trigger: CAGCCCCCTCTGCTGCCAGTCCCCCATGGTTCCCCAGTAGTAGGCCCTGCAACGTCCAGTGTAGAACTCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp TGGGATGTGGTAGAGGTCTGTCCTAGAGTACTCAGATaGCCGCCTGTGGGGACTTGCCCGGGGGCTAAGGCT +
Preference number: 6 (lower is better)
Translates to: WDVVEVCPRVLR*PPVGTCPGAKA
Trigger: AGCCTTAGCCCCCGGGCAAGTCCCCACAGGCGGCCATCTGAGTACTCTAGGACAGACCTCTACCACATCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp GTGAGGCTGGGAGCAGCTCGAAGAATGGGCAGGACCTaGGGCAGGCTCTGCTTCTGGGATGTGGTAGAGGTC +
Preference number: 6 (lower is better)
Translates to: VRLGAARRMGRT*GRLCFWDVVEV
Trigger: GACCTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGCTCCCAGCCTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TCCTGCATGACCCCAGTCGTGGGCGCCCTTTGTGGCTGGCTCTCTTaGCAGTTTGTTCCCCCGTCATGCTTGGGAGGCAGCCTGTGTTGT +
Preference number: 6 (lower is better)
Translates to: SCMTPVVGALCGWLS*QFVPPSCLGGSLCC
Trigger: ACAACACAGGCTGCCTCCCAAGCATGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACGACTGGGGTCATGCAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp GCTGTCCACTTACTGGTGGCTGCACAGACAGCTGAGTaGGGCTGGGAGCAGCTCGAAGAATGGGCAGGACCT +
Preference number: 6 (lower is better)
Translates to: AVHLLVAAQTAE*GWEQLEEWAGP
Trigger: AGGTCCTGCCCATTCTTCGAGCTGCTCCCAGCCTCACTCAGCTGTCTGTGCAGCCACCAGTAAGTGGACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp GCACTGAAAGGCACTGCGGCTTGTCCCAAGTTCCTCTaGAACCAAGTGCCACTCCAGGTGGCCATGTGTGGC +
Preference number: 6 (lower is better)
Translates to: ALKGTAACPKFL*NQVPLQVAMCG
Trigger: GCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGGAACTTGGGACAAGCCGCAGTGCCTTTCAGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GTCCCAAGTTCCTCTGCAACCAAGTGCCACTCCAGGTaGCCATGTGTGGCAGCGATGGCCTTCAGCCTCTCT +
Preference number: 6 (lower is better)
Translates to: VPSSSATKCHSR*PCVAAMAFSLS
Trigger: AGAGAGGCTGAAGGCCATCGCTGCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGGAACTTGGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp TCCTGCATGACCCCAGTCGTGGGCGCCCTTTGTGGCTaGCTCTCTTTGCAGTTTGTTCCCCCGTCATGCTTG +
Preference number: 6 (lower is better)
Translates to: SCMTPVVGALCG*LSLQFVPPSCL
Trigger: CAAGCATGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACGACTGGGGTCATGCAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GCTTGTAGTCCTATGGTCTCAGGGGTCATCACTGACTaGGGGAGGCCCACCACAGCTGGCACTTGGACAGAG +
Preference number: 6 (lower is better)
Translates to: ACSPMVSGVITD*GRPTTAGTWTE
Trigger: CTCTGTCCAAGTGCCAGCTGTGGTGGGCCTCCCCCAGTCAGTGATGACCCCTGAGACCATAGGACTACAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCTTCTGCTCCAAGTCCTGTTTCTGGAGGAGGAGGCTaGACAATGCCCGCAAGCTGCACAGGGAAGGGGGAT +
Preference number: 6 (lower is better)
Translates to: PSAPSPVSGGGG*TMPASCTGKGD
Trigger: ATCCCCCTTCCCTGTGCAGCTTGCGGGCATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGAGCAGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GCCAGAGAGGAAGCCTTCTGCTCCAAGTCCTGTTTCTaGAGGAGGAGGCTGGACAATGCCCGCAAGCTGCAC +
Preference number: 6 (lower is better)
Translates to: AREEAFCSKSCF*RRRLDNARKLH
Trigger: GTGCAGCTTGCGGGCATTGTCCAGCCTCCTCCTCCAGAAACAGGACTTGGAGCAGAAGGCTTCCTCTCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp AGGACTTGGAGCTCTCTGTACAGGGTCTGGGGCTGCTaGGCTTGCTTGCACTCTGCAGGCCATGCAGTCCAA +
Preference number: 6 (lower is better)
Translates to: RTWSSLYRVWGC*ACLHSAGHAVQ
Trigger: TTGGACTGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGAGCTCCAAGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp AACCTCACCAGGACTTGGAGCTCTCTGTACAGGGTCTaGGGCTGCTGGGCTTGCTTGCACTCTGCAGGCCAT +
Preference number: 6 (lower is better)
Translates to: NLTRTWSSLYRV*GCWACLHSAGH
Trigger: ATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGAGCTCCAAGTCCTGGTGAGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp TCGTGGGCGCCCTTTGTGGCTGGCTCTCTTTGCAGTTaGTTCCCCCGTCATGCTTGGGAGGCAGCCTGTGTT +
Preference number: 6 (lower is better)
Translates to: SWAPFVAGSLCS*FPRHAWEAACV
Trigger: AACACAGGCTGCCTCCCAAGCATGACGGGGGAACAAACTGCAAAGAGAGCCAGCCACAAAGGGCGCCCACGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp TTGGAGCTCTCTGTACAGGGTCTGGGGCTGCTGGGCTaGCTTGCACTCTGCAGGCCATGCAGTCCAACTGTC +
Preference number: 6 (lower is better)
Translates to: LELSVQGLGLLG*LALCRPCSPTV
Trigger: GACAGTTGGACTGCATGGCCTGCAGAGTGCAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGAGCTCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp CATCAGAAGCATCCAGAGGGGAGGGAGCAGAAACCTCACCAGGACTaGGAGCTCTCTGTACAGGGTCTGGGGCTGCTGGGCTTGCTTGCA +
Preference number: 6 (lower is better)
Translates to: HQKHPEGREQKPHQD*ELSVQGLGLLGLLA
Trigger: TGCAAGCAAGCCCAGCAGCCCCAGACCCTGTACAGAGAGCTCCAAGTCCTGGTGAGGTTTCTGCTCCCTCCCCTCTGGATGCTTCTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp TCTACTCTTCTCCAGAGACGCCTCCAGCTCCACATCTaGGTTTTCACTGCCGCTGCTGCCGTCGCTGCCACT +
Preference number: 6 (lower is better)
Translates to: STLLQRRLQLHI*VFTAAAAVAAT
Trigger: AGTGGCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAGGCGTCTCTGGAGAAGAGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp AGGGTGTTGTGGGTAGCACCCTGTCCCTTCTCTCTGTaGCTGGCTGGTGATCAGCCTGGTAGGAACCCACAG +
Preference number: 6 (lower is better)
Translates to: RVLWVAPCPFSL*LAGDQPGRNPQ
Trigger: CTGTGGGTTCCTACCAGGCTGATCACCAGCCAGTCACAGAGAGAAGGGACAGGGTGCTACCCACAACACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp TTTTCGGGCCCAGGTGTGGGTGGTATTTCCTGGCCCTaGGGTCCCTTGGGTTCTGTGTCTGTACTGGCTGGA +
Preference number: 6 (lower is better)
Translates to: FSGPGVGGISWP*GPLGSVSVLAG
Trigger: TCCAGCCAGTACAGACACAGAACCCAAGGGACCTCAGGGCCAGGAAATACCACCCACACCTGGGCCCGAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp TGTGAGAACCCAGTTGACAGGCAGGCTGGACTTGGTTaGCAGGGGCTGTCCACTTACTGGTGGCTGCACAGA +
Preference number: 6 (lower is better)
Translates to: CENPVDRQAGLG*QGLSTYWWLHR
Trigger: TCTGTGCAGCCACCAGTAAGTGGACAGCCCCTGGCAACCAAGTCCAGCCTGCCTGTCAACTGGGTTCTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GACAGGTCTCGGGGTCTTCAGGGAGAGCTTTGTCCTTaGGGTCCTCCTCATCATTGCTGCTCTCACTCGACC +
Preference number: 6 (lower is better)
Translates to: DRSRGLQGELCP*GPPHHCCSHST
Trigger: GGTCGAGTGAGAGCAGCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCCCTGAAGACCCCGAGACCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCTCTGCAACCAAGTGCCACTCCAGGTGGCCATGTGTaGCAGCGATGGCCTTCAGCCTCTCTACTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: PLQPSATPGGHV*QRWPSASLLLL
Trigger: CAGAAGAAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCTGGCCCTGAGGTCCCTTGGGTTCTGTGTCTGTACTaGCTGGAGGCTGTTCCAGAAAAGCAGGAGTCTTGG +
Preference number: 6 (lower is better)
Translates to: PGPEVPWVLCLY*LEAVPEKQESW
Trigger: CCAAGACTCCTGCTTTTCTGGAACAGCCTCCAGCCAGTACAGACACAGAACCCAAGGGACCTCAGGGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CAGGTGTGGGTGGTATTTCCTGGCCCTGAGGTCCCTTaGGTTCTGTGTCTGTACTGGCTGGAGGCTGTTCCA +
Preference number: 6 (lower is better)
Translates to: QVWVVFPGPEVP*VLCLYWLEAVP
Trigger: TGGAACAGCCTCCAGCCAGTACAGACACAGAACCCAAGGGACCTCAGGGCCAGGAAATACCACCCACACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GACTTAGGTCCAAAGCTGCCTTTTCGGGCCCAGGTGTaGGTGGTATTTCCTGGCCCTGAGGTCCCTTGGGTT +
Preference number: 6 (lower is better)
Translates to: DLGPKLPFRAQV*VVFPGPEVPWV
Trigger: AACCCAAGGGACCTCAGGGCCAGGAAATACCACCCACACCTGGGCCCGAAAAGGCAGCTTTGGACCTAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp CTCTTTGCAGTTTGTTCCCCCGTCATGCTTGGGAGGCAGCCTGTGTaGTTCTTGGCATTAGAGGATGCCTGCAGGAGATGCGGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: LFAVCSPVMLGRQPV*FLALEDACRRCGWV
Trigger: CACCCAGCCGCATCTCCTGCAGGCATCCTCTAATGCCAAGAACAACACAGGCTGCCTCCCAAGCATGACGGGGGAACAAACTGCAAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp CCCACCACAGCTGGCACTTGGACAGAGAGCAACTTCTaGGTTGTGAGAACCCAGTTGACAGGCAGGCTGGAC +
Preference number: 6 (lower is better)
Translates to: PTTAGTWTESNF*VVRTQLTGRLD
Trigger: GTCCAGCCTGCCTGTCAACTGGGTTCTCACAACTCAGAAGTTGCTCTCTGTCCAAGTGCCAGCTGTGGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp GGAGAGCTTTGTCCTTGGGGTCCTCCTCATCATTGCTaGTCTCACTCGACCCTTCCTCTTCCAAGATGGGGG +
Preference number: 6 (lower is better)
Translates to: GELCPWGPPHHC*SHSTLPLPRWG
Trigger: CCCCCATCTTGGAAGAGGAAGGGTCGAGTGAGAGCAGCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp GCAGCTCGAAGAATGGGCAGGACCTTGGGCAGGCTCTaGTTCTGGGATGTGGTAGAGGTCTGTCCTAGAGTA +
Preference number: 6 (lower is better)
Translates to: AARRMGRTLGRL*FWDVVEVCPRV
Trigger: TACTCTAGGACAGACCTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCTTCGAGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GATGTAGCGGTCTCTGCATTGGGCATCGCTCCTACCTaGCACCTCTTCCCGGATTTTAAACCAGTCCTGCGC +
Preference number: 6 (lower is better)
Translates to: DVAVSALGIAPT*HLFPDFKPVLR
Trigger: GCGCAGGACTGGTTTAAAATCCGGGAAGAGGTGCCAGGTAGGAGCGATGCCCAATGCAGAGACCGCTACATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CAA 72 bp AGACAGGTCTCGGGGTCTTCAGGGAGAGCTTTGTCCTaGGGGTCCTCCTCATCATTGCTGCTCTCACTCGAC +
Preference number: 6 (lower is better)
Translates to: RQVSGSSGRALS*GSSSSLLLSLD
Trigger: GTCGAGTGAGAGCAGCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCCCTGAAGACCCCGAGACCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TTTAGCTGCAGACAGGTCTCGGGGTCTTCAGGGAGAGCTTTGTCCTaGGGGTCCTCCTCATCATTGCTGCTCTCACTCGACCCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: FSCRQVSGSSGRALS*GSSSSLLLSLDPSS
Trigger: AGAGGAAGGGTCGAGTGAGAGCAGCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCCCTGAAGACCCCGAGACCTGTCTGCAGCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp CAGGGAGAGCTTTGTCCTTGGGGTCCTCCTCATCATTaGTGCTCTCACTCGACCCTTCCTCTTCCAAGATGG +
Preference number: 6 (lower is better)
Translates to: QGELCPWGPPHH*CSHSTLPLPRW
Trigger: CCATCTTGGAAGAGGAAGGGTCGAGTGAGAGCAGCAATGATGAGGAGGACCCCAAGGACAAAGCTCTCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CTTTGTGGGGAGGATTTAGGGAAATGGTCTGTAGGTTaGGGGGCTGCTTGTCTGTGGCTGAGATCCCACCCA +
Preference number: 6 (lower is better)
Translates to: LCGEDLGKWSVG*GAACLWLRSHP
Trigger: TGGGTGGGATCTCAGCCACAGACAAGCAGCCCCCCAACCTACAGACCATTTCCCTAAATCCTCCCCACAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CTAAAAGCAGCAGGGGCTGCAACCTGGGTCCCTTTGTaGGGAGGATTTAGGGAAATGGTCTGTAGGTTGGGG +
Preference number: 6 (lower is better)
Translates to: LKAAGAATWVPL*GGFREMVCRLG
Trigger: CCCCAACCTACAGACCATTTCCCTAAATCCTCCCCACAAAGGGACCCAGGTTGCAGCCCCTGCTGCTTTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CGAAGAATGGGCAGGACCTTGGGCAGGCTCTGCTTCTaGGATGTGGTAGAGGTCTGTCCTAGAGTACTCAGA +
Preference number: 6 (lower is better)
Translates to: RRMGRTLGRLCF*DVVEVCPRVLR
Trigger: TCTGAGTACTCTAGGACAGACCTCTACCACATCCCAGAAGCAGAGCCTGCCCAAGGTCCTGCCCATTCTTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp GCTGGAATTTCTGCAGGCACTGAAAGGCACTGCGGCTaGTCCCAAGTTCCTCTGCAACCAAGTGCCACTCCA +
Preference number: 6 (lower is better)
Translates to: AGISAGTERHCG*SQVPLQPSATP
Trigger: TGGAGTGGCACTTGGTTGCAGAGGAACTTGGGACAAGCCGCAGTGCCTTTCAGTGCCTGCAGAAATTCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp GTTTGTTCCCCCGTCATGCTTGGGAGGCAGCCTGTGTaGTTCTTGGCATTAGAGGATGCCTGCAGGAGATGC +
Preference number: 6 (lower is better)
Translates to: VCSPVMLGRQPV*FLALEDACRRC
Trigger: GCATCTCCTGCAGGCATCCTCTAATGCCAAGAACAACACAGGCTGCCTCCCAAGCATGACGGGGGAACAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp CTCTTCCTCTGCAGATGCTGTTTCTTCCTGGCCAAGATCTTCCACTaGCTCAGACACTGGGAGCCTGACCGATGGGGCAATTCAGAAGCG +
Preference number: 6 (lower is better)
Translates to: LFLCRCCFFLAKIFH*LRHWEPDRWGNSEA
Trigger: CGCTTCTGAATTGCCCCATCGGTCAGGCTCCCAGTGTCTGAGCAAGTGGAAGATCTTGGCCAGGAAGAAACAGCATCTGCAGAGGAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS TCA 72 bp GCAGACGTTGTAGGCGGTCACTCACTACAGACTTCCTaGGCAAGGCTTTCTCCCAGTGCTTCCACTTGGTCA +
Preference number: 6 (lower is better)
Translates to: ADVVGGHSLQTS*ARLSPSASTWS
Trigger: TGACCAAGTGGAAGCACTGGGAGAAAGCCTTGCTCAGGAAGTCTGTAGTGAGTGACCGCCTACAACGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp AACCTTCCTTGTGGTGATTTTGAGAGGCATCCTGAGTaGAGCAGGAGACAGCAGGGTGTTGTGGGTAGCACC +
Preference number: 6 (lower is better)
Translates to: NLPCGDFERHPE*SRRQQGVVGST
Trigger: GGTGCTACCCACAACACCCTGCTGTCTCCTGCTGCACTCAGGATGCCTCTCAAAATCACCACAAGGAAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCAGACAGATCAAACAGGATCTCTTCCTGCTGCTCCTaGTTCTGGGCTAGCAACTGGCTAACCTCTGCTAGC +
Preference number: 6 (lower is better)
Translates to: PDRSNRISSCCS*FWASNWLTSAS
Trigger: GCTAGCAGAGGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCAGGAAGAGATCCTGTTTGATCTGTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCCAGAATCCCCTTTTCAGGCTGGGATCTAAGCTCTTaGTCCAACGGTAGATCAGCTGCATGGAGTCTCTCC +
Preference number: 6 (lower is better)
Translates to: PRIPFSGWDLSS*SNGRSAAWSLS
Trigger: GGAGAGACTCCATGCAGCTGATCTACCGTTGGACCAAGAGCTTAGATCCCAGCCTGAAAAGGGGATTCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CAA 72 bp CTTGCGGTATGGGATATGGTTCCCAACTCGCATCTCTaGGACCAGCTGGGTGAGCATGTGGTCTTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: LAVWDMVPNSHL*DQLGEHVVFLF
Trigger: GAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACCGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CAA 72 bp AGCAGAGACGGTGGTAGAACCTTCCTTGTGGTGATTTaGAGAGGCATCCTGAGTGCAGCAGGAGACAGCAGG +
Preference number: 6 (lower is better)
Translates to: SRDGGRTFLVVI*RGILSAAGDSR
Trigger: CCTGCTGTCTCCTGCTGCACTCAGGATGCCTCTCAAAATCACCACAAGGAAGGTTCTACCACCGTCTCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TTCTCCCAGTGCTTCCACTTGGTCACCAAGAGCTGTTCAAAGGCCTaGATTCCCTGGGTAGCCTTCTCCCGTGTTTCTTCGTTGGCAGGA +
Preference number: 6 (lower is better)
Translates to: FSQCFHLVTKSCSKA*IPWVAFSRVSSLAG
Trigger: TCCTGCCAACGAAGAAACACGGGAGAAGGCTACCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACCAAGTGGAAGCACTGGGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TTTCTCAGCAGCAGAGACGGTGGTAGAACCTTCCTTGTGGTGATTTaGAGAGGCATCCTGAGTGCAGCAGGAGACAGCAGGGTGTTGTGG +
Preference number: 6 (lower is better)
Translates to: FLSSRDGGRTFLVVI*RGILSAAGDSRVLW
Trigger: CCACAACACCCTGCTGTCTCCTGCTGCACTCAGGATGCCTCTCAAAATCACCACAAGGAAGGTTCTACCACCGTCTCTGCTGCTGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp AGGAGTGGCTGCTTCGGTCTTTCCTTCATCAGTGTGTaGCTCTTGCAGGCCGGATCCTTCAAACTTGCTGAG +
Preference number: 6 (lower is better)
Translates to: RSGCFGLSFISV*LLQAGSFKLAE
Trigger: CTCAGCAAGTTTGAAGGATCCGGCCTGCAAGAGTCACACACTGATGAAGGAAAGACCGAAGCAGCCACTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp ACCTCCATGCAGCCCGCAGTATCAATCTGCAATAGCTaGATAAGCAGTGTGAATACCGGAGTGCTGGCCAGG +
Preference number: 6 (lower is better)
Translates to: TSMQPAVSICNS*ISSVNTGVLAR
Trigger: CCTGGCCAGCACTCCGGTATTCACACTGCTTATTCAGCTATTGCAGATTGATACTGCGGGCTGCATGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp GCTGCTTCGGTCTTTCCTTCATCAGTGTGTGACTCTTaGAGGCCGGATCCTTCAAACTTGCTGAGTGGGTGT +
Preference number: 6 (lower is better)
Translates to: AASVFPSSVCDS*RPDPSNLLSGC
Trigger: ACACCCACTCAGCAAGTTTGAAGGATCCGGCCTGCAAGAGTCACACACTGATGAAGGAAAGACCGAAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp TTGGTCACCAAGAGCTGTTCAAAGGCCTTGATTCCCTaGGTAGCCTTCTCCCGTGTTTCTTCGTTGGCAGGA +
Preference number: 6 (lower is better)
Translates to: LVTKSCSKALIP*VAFSRVSSLAG
Trigger: TCCTGCCAACGAAGAAACACGGGAGAAGGCTACCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp TTGCGGTATGGGATATGGTTCCCAACTCGCATCTCTTaGACCAGCTGGGTGAGCATGTGGTCTTCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: LRYGIWFPTRIS*TSWVSMWSSSS
Trigger: AGAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACCGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CCA 72 bp GGTGATCAGCCTGGTAGGAACCCACAGGTCAATGTCTaGCACTCTGTACTGTTGAGGAGTCAGTGCTCTACT +
Preference number: 6 (lower is better)
Translates to: GDQPGRNPQVNV*HSVLLRSQCST
Trigger: AGTAGAGCACTGACTCCTCAACAGTACAGAGTGCCAGACATTGACCTGTGGGTTCCTACCAGGCTGATCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp GAGGGCAGACTTCTGCCATCCTTCACCTTGGGGCATTaGGTTCCAGACAGATCAAACAGGATCTCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: EGRLLPSFTLGH*VPDRSNRISSC
Trigger: GCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp TCGTTGGCAGGAGGCCCCACTCCAGTAACCTTGTCCTaGAAGTATGGCTTCAGGAAGTGGCCTATGTACATG +
Preference number: 6 (lower is better)
Translates to: SLAGGPTPVTLS*KYGFRKWPMYM
Trigger: CATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTTACTGGAGTGGGGCCTCCTGCCAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp TGCTTCCACTTGGTCACCAAGAGCTGTTCAAAGGCCTaGATTCCCTGGGTAGCCTTCTCCCGTGTTTCTTCG +
Preference number: 6 (lower is better)
Translates to: CFHLVTKSCSKA*IPWVAFSRVSS
Trigger: CGAAGAAACACGGGAGAAGGCTACCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACCAAGTGGAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TTTCCTTCATCAGTGTGTGACTCTTGCAGGCCGGATCCTTCAAACTaGCTGAGTGGGTGTCCGAGAAGTGTAGGAACCGGTCTCCTCTTG +
Preference number: 6 (lower is better)
Translates to: FPSSVCDSCRPDPSN*LSGCPRSVGTGLLL
Trigger: CAAGAGGAGACCGGTTCCTACACTTCTCGGACACCCACTCAGCAAGTTTGAAGGATCCGGCCTGCAAGAGTCACACACTGATGAAGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TACATGTATGAGGGCAGACTTCTGCCATCCTTCACCTTGGGGCATTaGGTTCCAGACAGATCAAACAGGATCTCTTCCTGCTGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: YMYEGRLLPSFTLGH*VPDRSNRISSCCSW
Trigger: CCAGGAGCAGCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp CCTCATCAGGCAGCGAATCTGCTTCAGAGTCTGAACTaGGACTGGATTCAGAGACTTCAAAGTGGACGCTGG +
Preference number: 6 (lower is better)
Translates to: PHQAANLLQSLN*DWIQRLQSGRW
Trigger: CCAGCGTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAGCAGATTCGCTGCCTGATGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp GAAGTATGGCTTCAGGAAGTGGCCTATGTACATGTATaGGGGCAGACTTCTGCCATCCTTCACCTTGGGGCA +
Preference number: 6 (lower is better)
Translates to: EVWLQEVAYVHV*GQTSAILHLGA
Trigger: TGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp TTGGTTCCAGACAGATCAAACAGGATCTCTTCCTGCTaGTCCTGGTTCTGGGCTAGCAACTGGCTAACCTCT +
Preference number: 6 (lower is better)
Translates to: LVPDRSNRISSC*SWFWASNWLTS
Trigger: AGAGGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp CATTTGGTTCCAGACAGATCAAACAGGATCTCTTCCTaGTGCTCCTGGTTCTGGGCTAGCAACTGGCTAACC +
Preference number: 6 (lower is better)
Translates to: HLVPDRSNRISS*CSWFWASNWLT
Trigger: GGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp GGAAGTGGCCTATGTACATGTATGAGGGCAGACTTCTaGCATCCTTCACCTTGGGGCATTTGGTTCCAGACA +
Preference number: 6 (lower is better)
Translates to: GSGLCTCMRADF*HPSPWGIWFQT
Trigger: TGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGTACATAGGCCACTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS GCA 72 bp GCCTTCAGCCTCTCTACTTCTTCTGTGCTCCATTCCTaGTTACTGATGCTTGGATGCTCAGAACTCTGCCAG +
Preference number: 6 (lower is better)
Translates to: AFSLSTSSVLHS*LLMLGCSELCQ
Trigger: CTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGCTGAAGGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp AGGGCAGACTTCTGCCATCCTTCACCTTGGGGCATTTaGTTCCAGACAGATCAAACAGGATCTCTTCCTGCT +
Preference number: 6 (lower is better)
Translates to: RADFCHPSPWGI*FQTDQTGSLPA
Trigger: AGCAGGAAGAGATCCTGTTTGATCTGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GTCTCTCCCTTCCATGAAGTAGACGATCTTGCGGTATaGGATATGGTTCCCAACTCGCATCTCTTGGACCAG +
Preference number: 6 (lower is better)
Translates to: VSPFHEVDDLAV*DMVPNSHLLDQ
Trigger: CTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACCGCAAGATCGTCTACTTCATGGAAGGGAGAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CAA 90 bp TTCTCCCGTGTTTCTTCGTTGGCAGGAGGCCCCACTCCAGTAACCTaGTCCTTGAAGTATGGCTTCAGGAAGTGGCCTATGTACATGTAT +
Preference number: 6 (lower is better)
Translates to: FSRVSSLAGGPTPVT*SLKYGFRKWPMYMY
Trigger: ATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTTACTGGAGTGGGGCCTCCTGCCAACGAAGAAACACGGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 90 bp TCAGACACTGGGAGCCTGACCGATGGGGCAATTCAGAAGCGATTCTaGCCCAGTGACCAACACCATATTTCTCTATTAGCTGGATCAGCT +
Preference number: 6 (lower is better)
Translates to: SDTGSLTDGAIQKRF*PSDQHHISLLAGSA
Trigger: AGCTGATCCAGCTAATAGAGAAATATGGTGTTGGTCACTGGGCAAGAATCGCTTCTGAATTGCCCCATCGGTCAGGCTCCCAGTGTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CAA 90 bp ATGTGGTCTTCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTTGTaGTACTGCTGGAATTTCTGCAGGCACTGGCACAACCTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: MWSSSSVHSLRFRVL*YCWNFCRHWHNLPG
Trigger: TCCTGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CAA 90 bp AGCATGTGGTCTTCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTaGTTGTACTGCTGGAATTTCTGCAGGCACTGGCACAACCTTCCA +
Preference number: 6 (lower is better)
Translates to: SMWSSSSVHSLRFRV*LYCWNFCRHWHNLP
Trigger: TGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS TCA 72 bp GCCTCTCTACTTCTTCTGTGCTCCATTCCTGCTTACTaGTGCTTGGATGCTCAGAACTCTGCCAGAACTTCC +
Preference number: 6 (lower is better)
Translates to: ASLLLLCSIPAY*CLDAQNSARTS
Trigger: GGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp AACGGTAGATCAGCTGCATGGAGTCTCTCCCTTCCATaGAGTAGACGATCTTGCGGTATGGGATATGGTTCC +
Preference number: 6 (lower is better)
Translates to: NGRSAAWSLSLP*SRRSCGMGYGS
Trigger: GGAACCATATCCCATACCGCAAGATCGTCTACTTCATGGAAGGGAGAGACTCCATGCAGCTGATCTACCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS GCA 72 bp TTGCGTTTCAGGGTTTTGTTGTACTGCTGGAATTTCTaGAGGCACTGGCACAACCTTCCAGGAGACCCAAGT +
Preference number: 6 (lower is better)
Translates to: LRFRVLLYCWNF*RHWHNLPGDPS
Trigger: ACTTGGGTCTCCTGGAAGGTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CAA 72 bp GGGAGCCTGACCGATGGGGCAATTCAGAAGCGATTCTaGCCCAGTGACCAACACCATATTTCTCTATTAGCT +
Preference number: 6 (lower is better)
Translates to: GSLTDGAIQKRF*PSDQHHISLLA
Trigger: AGCTAATAGAGAAATATGGTGTTGGTCACTGGGCAAGAATCGCTTCTGAATTGCCCCATCGGTCAGGCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CAA 72 bp TCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTTGTaGTACTGCTGGAATTTCTGCAGGCACTGGCACAAC +
Preference number: 6 (lower is better)
Translates to: SSSVHSLRFRVL*YCWNFCRHWHN
Trigger: GTTGTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS CAA 72 bp TCTTCCTCTTCTGTCCACTCCTTGCGTTTCAGGGTTTaGTTGTACTGCTGGAATTTCTGCAGGCACTGGCAC +
Preference number: 6 (lower is better)
Translates to: SSSSVHSLRFRV*LYCWNFCRHWH
Trigger: GTGCCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123934.2
CDS TCA 72 bp CAAGTCCTCATCAGGCAGCGAATCTGCTTCAGAGTCTaGACTGAGACTGGATTCAGAGACTTCAAAGTGGAC +
Preference number: 6 (lower is better)
Translates to: QVLIRQRICFRV*TETGFRDFKVD
Trigger: GTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAGCAGATTCGCTGCCTGATGAGGACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp TTTTCGTGTAAGTACTCCAGCTTCAGCAATTTGGGCTaGAGCAGACGTTGTAGGCGGTCACTCACTACAGAC +
Preference number: 6 (lower is better)
Translates to: FSCKYSSFSNLG*SRRCRRSLTTD
Trigger: GTCTGTAGTGAGTGACCGCCTACAACGTCTGCTTCAGCCCAAATTGCTGAAGCTGGAGTACTTACACGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS TCA 72 bp GACCGATGGGGCAATTCAGAAGCGATTCTTGCCCAGTaGCCAACACCATATTTCTCTATTAGCTGGATCAGC +
Preference number: 6 (lower is better)
Translates to: DRWGNSEAILAQ*PTPYFSISWIS
Trigger: GCTGATCCAGCTAATAGAGAAATATGGTGTTGGTCACTGGGCAAGAATCGCTTCTGAATTGCCCCATCGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CCA 72 bp ACATGTATGAGGGCAGACTTCTGCCATCCTTCACCTTaGGGCATTTGGTTCCAGACAGATCAAACAGGATCT +
Preference number: 6 (lower is better)
Translates to: TCMRADFCHPSP*GIWFQTDQTGS
Trigger: AGATCCTGTTTGATCTGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCAGTAACCTTGTCCTTGAAGTATGGCTTCAGGAAGTaGCCTATGTACATGTATGAGGGCAGACTTCTGCCA +
Preference number: 6 (lower is better)
Translates to: PVTLSLKYGFRK*PMYMYEGRLLP
Trigger: TGGCAGAAGTCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTTACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CAA 72 bp TGGGTGAGCATGTGGTCTTCCTCTTCTGTCCACTCCTaGCGTTTCAGGGTTTTGTTGTACTGCTGGAATTTC +
Preference number: 6 (lower is better)
Translates to: WVSMWSSSSVHS*RFRVLLYCWNF
Trigger: GAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCTCACCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
ENSMUST00000123934.2
CDS CCA 72 bp TCTGTTTTTCGTGTAAGTACTCCAGCTTCAGCAATTTaGGCTGAAGCAGACGTTGTAGGCGGTCACTCACTA +
Preference number: 6 (lower is better)
Translates to: SVFRVSTPASAI*AEADVVGGHSL
Trigger: TAGTGAGTGACCGCCTACAACGTCTGCTTCAGCCCAAATTGCTGAAGCTGGAGTACTTACACGAAAAACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp CCTTCAAAGTTAATATTGGAAATCTTCTCCCAGTCGTaGCTGTCTAGCCGGTTCCCCAACAATGCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: PSKLILEIFSQS*LSSRFPNNASS
Trigger: AGAGGAAGCATTGTTGGGGAACCGGCTAGACAGCCACGACTGGGAGAAGATTTCCAATATTAACTTTGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9
CDS CCA 72 bp GAGTCTGAACTGAGACTGGATTCAGAGACTTCAAAGTaGACGCTGGTGGATCCAGGATACAAAATCCTTTCA +
Preference number: 6 (lower is better)
Translates to: ESELRLDSETSK*TLVDPGYKILS
Trigger: TGAAAGGATTTTGTATCCTGGATCCACCAGCGTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035427.11
ENSMUST00000114115.9