Pregenerated sensors for SNAPC1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000114046

Ensembl transcript IDs: ENSMUST00000221833.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTCCAGCCGAAGCTTCCTGAAAACAAAAGCCGCGTCGAAATGCTGTaGGTTCATCAAGTCTTGCTGAAACCTGATGACTTCATCCCAGTC	+
Preference number: 5 (lower is better) Translates to: VQPKLPENKSRVEML*VHQVLLKPDDFIPV Trigger: GACTGGGATGAAGTCATCAGGTTTCAGCAAGACTTGATGAACGCACAGCATTTCGACGCGGCTTTTGTTTTCAGGAAGCTTCGGCTGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS TCA 90 bp	AAAACAAAAGCCGCGTCGAAATGCTGTGCGTTCATCAAGTCTTGCTaGAACCTGATGACTTCATCCCAGTCCTTCAAGGCAACTCGGATC	+
Preference number: 5 (lower is better) Translates to: KTKAASKCCAFIKSC*NLMTSSQSFKATRI Trigger: GATCCGAGTTGCCTTGAAGGACTGGGATGAAGTCATCAGGTTTCAGCAAGACTTGATGAACGCACAGCATTTCGACGCGGCTTTTGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS TCA 90 bp	ATGCACTGTGGCTGGGAGTTCTTCGTATTATATATGACAGTTGCTTaGGTTTCAACCCAGACATATCCACCTCTTTTGGCAAGCATCCTG	+
Preference number: 5 (lower is better) Translates to: MHCGWEFFVLYMTVA*VSTQTYPPLLASIL Trigger: CAGGATGCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS TCA 90 bp	TCACACACACAATGCACTGTGGCTGGGAGTTCTTCGTATTATATATaGCAGTTGCTTGAGTTTCAACCCAGACATATCCACCTCTTTTGG	+
Preference number: 5 (lower is better) Translates to: SHTQCTVAGSSSYYI*QLLEFQPRHIHLFW Trigger: CCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATTGTGTGTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS GCA 90 bp	CACAATGCACTGTGGCTGGGAGTTCTTCGTATTATATATGACAGTTaGTTGAGTTTCAACCCAGACATATCCACCTCTTTTGGCAAGCAT	+
Preference number: 5 (lower is better) Translates to: HNALWLGVLRIIYDS*LSFNPDISTSFGKH Trigger: ATGCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS CCA 90 bp	CCTCATTTTGCCACTTACAACATAATTCACACACACAATGCACTGTaGCTGGGAGTTCTTCGTATTATATATGACAGTTGCTTGAGTTTC	+
Preference number: 5 (lower is better) Translates to: PHFATYNIIHTHNAL*LGVLRIIYDSCLSF Trigger: GAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATTGTGTGTGTGAATTATGTTGTAAGTGGCAAAATGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS CAA 90 bp	AATGCACTGTGGCTGGGAGTTCTTCGTATTATATATGACAGTTGCTaGAGTTTCAACCCAGACATATCCACCTCTTTTGGCAAGCATCCT	+
Preference number: 6 (lower is better) Translates to: NALWLGVLRIIYDSC*SFNPDISTSFGKHP Trigger: AGGATGCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS TCA 72 bp	CAATGCACTGTGGCTGGGAGTTCTTCGTATTATATATaGCAGTTGCTTGAGTTTCAACCCAGACATATCCAC	+
Preference number: 6 (lower is better) Translates to: QCTVAGSSSYYI*QLLEFQPRHIH Trigger: GTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221833.2
CDS CCA 72 bp	GCCACTTACAACATAATTCACACACACAATGCACTGTaGCTGGGAGTTCTTCGTATTATATATGACAGTTGC	+
Preference number: 6 (lower is better) Translates to: ATYNIIHTHNAL*LGVLRIIYDSC Trigger: GCAACTGTCATATATAATACGAAGAACTCCCAGCCACAGTGCATTGTGTGTGTGAATTATGTTGTAAGTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221833.2