RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNAI3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006587

Ensembl transcript IDs: ENSMUST00000006762.7

Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACGTTAACCAGCCACCGAGGCCAGCCCCAAGCAGGACAACAGTGCTaGGGACAGATGAGGTGGGACCTGGCTTTAGCCCACTCCTCCCTG +
Preference number: 1 (lower is better)
Translates to: TLTSHRGQPQAGQQC*GQMRWDLALAHSSL
Trigger: CAGGGAGGAGTGGGCTAAAGCCAGGTCCCACCTCATCTGTCCTCAGCACTGTTGTCCTGCTTGGGGCTGGCCTCGGTGGCTGGTTAACGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 90 bp CAGGCCTTAGGGGAAGATGCCCGAAGGCTCCACTGGGCTTGGTTCTaGCAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGAC +
Preference number: 1 (lower is better)
Translates to: QALGEDARRLHWAWF*QDTGNSELGPVLDD
Trigger: GTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR-3UTR CCA 90 bp ACTCCTCCCTGGCCCTGCCTCATCTTACAGGGTGGGGCCAGGGTGTACCTGTGCAACTGGGCCCTGTCCTaGATGACAGAACCACTGAGA +
Preference number: 2 (lower is better)
Translates to: TPPWPCLILQGGARVYLCNWALS*MTEPLR
Trigger: TCTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTT...GCACAGGTACACCCTGGCCCCACCCTGTAAGATGAGGCAGGGCCAGGGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR-3UTR CCA 90 bp GCTTGGTTCTGGCAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACGAGGATTGTCGGGTTTaGCCCCTCCACCCTGCTGTG +
Preference number: 2 (lower is better)
Translates to: AWFWQDTGNSELGPVLDDEDCRV*PLHPAV
Trigger: CACAGCAGGGTGGAGGGGCCAAACCCGACAATCCTC...GTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR-3UTR CCA 90 bp GTGCACACACTGTGCTCTCAAGTAAAAATGGTCATTCCAAGCTGCACACAAGGGAGGCTCCACTGGGCTTaGTTCTGGCAGGACACAGGT +
Preference number: 2 (lower is better)
Translates to: VHTLCSQVKMVIPSCTQGRLHWA*FWQDTG
Trigger: ACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCT...CCCTTGTGTGCAGCTTGGAATGACCATTTTTACTTGAGAGCACAGTGTGTGCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CAA 90 bp TCATTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTaGTCCAGTGTTAGCTATTTCCCAATAGGCGCTCCTTTTTGGAAC +
Preference number: 2 (lower is better)
Translates to: SFQAAHKGTQVSWWI*SSVSYFPIGAPFWN
Trigger: GTTCCAAAAAGGAGCGCCTATTGGGAAATAGCTAACACTGGACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR TCA 72 bp AGCCACCGAGGCCAGCCCCAAGCAGGACAACAGTGCTaGGGACAGATGAGGTGGGACCTGGCTTTAGCCCAC +
Preference number: 3 (lower is better)
Translates to: SHRGQPQAGQQC*GQMRWDLALAH
Trigger: GTGGGCTAAAGCCAGGTCCCACCTCATCTGTCCTCAGCACTGTTGTCCTGCTTGGGGCTGGCCTCGGTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 72 bp GGGGAAGATGCCCGAAGGCTCCACTGGGCTTGGTTCTaGCAGGACACAGGTAACAGTGAACTGGGCCCTGTC +
Preference number: 3 (lower is better)
Translates to: GEDARRLHWAWF*QDTGNSELGPV
Trigger: GACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 72 bp GCCTTAGGGGAAGATGCCCGAAGGCTCCACTGGGCTTaGTTCTGGCAGGACACAGGTAACAGTGAACTGGGC +
Preference number: 3 (lower is better)
Translates to: ALGEDARRLHWA*FWQDTGNSELG
Trigger: GCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 72 bp GCCCACTCCTCCCTGGCCCTGCCTCATCTTACAGGGTaGGGCCAGGGTGTACCTGTGCTTGTGTATATACAC +
Preference number: 3 (lower is better)
Translates to: AHSSLALPHLTG*GQGVPVLVYIH
Trigger: GTGTATATACACAAGCACAGGTACACCCTGGCCCCACCCTGTAAGATGAGGCAGGGCCAGGGAGGAGTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR GCA 72 bp GATAAGTCTCCTCGGAACACAGGCCTTAGGGGAAGATaGCCGAAGGCTCCACTGGGCTTGGTTCTGGCAGGA +
Preference number: 3 (lower is better)
Translates to: DKSPRNTGLRGR*PKAPLGLVLAG
Trigger: TCCTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTGTGTTCCGAGGAGACTTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 72 bp ACACAGGCCTTAGGGGAAGATGCCCGAAGGCTCCACTaGGCTTGGTTCTGGCAGGACACAGGTAACAGTGAA +
Preference number: 3 (lower is better)
Translates to: TQALGEDARRLH*AWFWQDTGNSE
Trigger: TTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR-3UTR CAA 90 bp CTCCTCCCTGGCCCTGCCTCATCTTACAGGGTGGGGCCAGGGTGTACCTGTGCTGTGTCATGGTGGATTTaGTCCAGTGTTAGCTATTTC +
Preference number: 3 (lower is better)
Translates to: LLPGPASSYRVGPGCTCAVSWWI*SSVSYF
Trigger: GAAATAGCTAACACTGGACAAAATCCACCATGACAC...AGCACAGGTACACCCTGGCCCCACCCTGTAAGATGAGGCAGGGCCAGGGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 72 bp GGCAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTaGATGACAGAACCACTGAGAGGATTGTCGGGTTTG +
Preference number: 3 (lower is better)
Translates to: GRTQVTVNWALS*MTEPLRGLSGL
Trigger: CAAACCCGACAATCCTCTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR-3UTR CAA 90 bp TTCCCAATAGGCGCTCCTTTTTGGAACAGGTCCAGCAGACAGGCCAAACTGAAAAAGGCTCCACTGGGCTaGGTTCTGGCAGGACACAGG +
Preference number: 3 (lower is better)
Translates to: FPIGAPFWNRSSRQAKLKKAPLG*VLAGHR
Trigger: CCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCTT...TTTCAGTTTGGCCTGTCTGCTGGACCTGTTCCAAAAAGGAGCGCCTATTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR GCA 72 bp AGGCAACTGAGCCTGGCGCTAAGAGGTAGCTATGCTTaGCAAGGTTGTGCACACACTGTGCTCTCAAGTAAA +
Preference number: 3 (lower is better)
Translates to: RQLSLALRGSYA*QGCAHTVLSSK
Trigger: TTTACTTGAGAGCACAGTGTGTGCACAACCTTGGCAAGCATAGCTACCTCTTAGCGCCAGGCTCAGTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CCA 72 bp TTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTaGATTTTGTCCAGTGTTAGCTATTTCCCAATAGGC +
Preference number: 3 (lower is better)
Translates to: FQAAHKGTQVSW*ILSSVSYFPIG
Trigger: GCCTATTGGGAAATAGCTAACACTGGACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR GCA 72 bp GAGGTAGCTATGCTTGCCAAGGTTGTGCACACACTGTaGTCTCAAGTAAAAATGGTCATTCCAAGCTGCACA +
Preference number: 3 (lower is better)
Translates to: EVAMLAKVVHTL*SQVKMVIPSCT
Trigger: TGTGCAGCTTGGAATGACCATTTTTACTTGAGAGCACAGTGTGTGCACAACCTTGGCAAGCATAGCTACCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR GCA 90 bp TTAGCCCACTCCTCCCTGGCCCTGCCTCATCTTACAGGGTGGGGCCAGGGTGTACGCACACCTTACAGATaGAGGGCAGCGTGTGGGTGC +
Preference number: 4 (lower is better)
Translates to: LAHSSLALPHLTGWGQGVRTPYR*RAACGC
Trigger: GCACCCACACGCTGCCCTGCATCTGTAAGGTGTGCG...TACACCCTGGCCCCACCCTGTAAGATGAGGCAGGGCCAGGGAGGAGTGGGCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp GCTTGGTTCTGGCAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACGTCTGGGCCCAGGATTaGGGGCCAGCGTGTGGGCAG +
Preference number: 4 (lower is better)
Translates to: AWFWQDTGNSELGPVLDDVWAQD*GPACGQ
Trigger: CTGCCCACACGCTGGCCCCCAATCCTGGGCCCAGAC...GTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp AGGCTCCACTGGGCTTGGTTCTGGCAGGACACAGGTAACAGTGAACTGGGCCCTTGCGGGAGAAGGCCTTaGGGCACACGGCGCACCTGT +
Preference number: 4 (lower is better)
Translates to: RLHWAWFWQDTGNSELGPCGRRP*GTRRTC
Trigger: ACAGGTGCGCCGTGTGCCCCAAGGCCTTCTCCCGCA...AGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CAA 72 bp TGGGCCCTGTCCTGGATGACAGAACCACTGAGAGGATaGTCGGGTTTGGCCCCTCCACCCTGCTGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: WALSWMTEPLRG*SGLAPPPCCAH
Trigger: GTGGGCACAGCAGGGTGGAGGGGCCAAACCCGACAATCCTCTCAGTGGTTCTGTCATCCAGGACAGGGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR TCA 90 bp CAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACAGAACCACTGAGCGCCCAGTCGGCAGGTaGCAGTGCAGCTGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: QDTGNSELGPVLDDRTTERPVGR*QCSCWC
Trigger: GCACCAGCAGCTGCACTGTCACCTGCCGACTGGGCG...CTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR GCA 90 bp GGACCTGGCTTTAGCCCACTCCTCCCTGGCCCTGCCTCATCTTACAGGGTGGGGTCTCACCTGTATGGGTaGGGATGTGACCCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: GPGFSPLLPGPASSYRVGSHLYG*GCDPGA
Trigger: TGCTCCAGGGTCACATCCGCACCCATACAGGTGAGA...CCCCACCCTGTAAGATGAGGCAGGGCCAGGGAGGAGTGGGCTAAAGCCAGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp GACCTGGCTTTAGCCCACTCCTCCCTGGCCCTGCCTCATCTTACAGGGTGGGGCCCAGTTTCCCGTAGTTaGGGACCCTGTGACTGGAGT +
Preference number: 4 (lower is better)
Translates to: DLALAHSSLALPHLTGWGPVSRS*GPCDWS
Trigger: ACTCCAGTCACAGGGTCCCCAACTACGGGAAACTGG...GCCCCACCCTGTAAGATGAGGCAGGGCCAGGGAGGAGTGGGCTAAAGCCAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR TCA 90 bp GACAGAACCACTGAGAGGATTGTCGGGTTTGGCCCCTCCACCCTGCTGTGCCCAACCCAGCTGGTTTCCTaGGGTTCTGGGCCAGAGACT +
Preference number: 4 (lower is better)
Translates to: DRTTERIVGFGPSTLLCPTQLVS*GSGPET
Trigger: AGTCTCTGGCCCAGAACCTCAGGAAACCAGCTGGGT...TGGGCACAGCAGGGTGGAGGGGCCAAACCCGACAATCCTCTCAGTGGTTCTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR GCA 90 bp CACTGGGCTTGGTTCTGGCAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGGGGGGTCACTGGGATTaGAAGGGGCCTCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: HWAWFWQDTGNSELGPVLGGHWD*KGPPHL
Trigger: CAGATGAGGAGGCCCCTTGCAATCCCAGTGACCCCC...CAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp AAATGGTCATTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTTGGTCACACTGGGGGCCTaGGCAGCCCGAGGGCCCACC +
Preference number: 4 (lower is better)
Translates to: KWSFQAAHKGTQVSWWILVTLGA*AARGPT
Trigger: GGTGGGCCCTCGGGCTGCCCAGGCCCCCAGTGTGAC...CAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAATGACCATTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR GCA 90 bp ACACAGGCCTTAGGGGAAGATGCCCGAAGGCTCCACTGGGCTTGGTTCTGGCAGCAGCGAAGGCCCTGCTaGAGTGAGAACAGGTATAGG +
Preference number: 4 (lower is better)
Translates to: TQALGEDARRLHWAWFWQQRRPC*SENRYR
Trigger: CCTATACCTGTTCTCACTGCAGCAGGGCCTTCGCTG...CTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp ACACAGGCCTTAGGGGAAGATGCCCGAAGGCTCCACTGGGCTTGGTTCTGGCAGTGGGGACCCTGTGACTaGAGTGCGTTTTCACCAGGA +
Preference number: 4 (lower is better)
Translates to: TQALGEDARRLHWAWFWQWGPCD*SAFSPG
Trigger: TCCTGGTGAAAACGCACTCCAGTCACAGGGTCCCCA...CTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR TCA 90 bp AGGCTCCACTGGGCTTGGTTCTGGCAGGACACAGGTAACAGTGAACTGGGCCCTCCCAGAGTTTCTCTGTaGTTCGGCAGAAGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: RLHWAWFWQDTGNSELGPPRVSL*FGRRGR
Trigger: CCTGCCTCTTCTGCCGAATCACAGAGAAACTCTGGG...AGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTGGAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp ACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACAGAACCACTGAGAGGATTAGGGGCCTCCTCATCTaGCAGGTGGCGGGATCCTGC +
Preference number: 4 (lower is better)
Translates to: TGNSELGPVLDDRTTERIRGLLI*QVAGSC
Trigger: GCAGGATCCCGCCACCTGCCAGATGAGGAGGCCCCT...AATCCTCTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp ACACAGGCCTTAGGGGAAGATGCCCGAAGGCTCCACTGGGCTTGGTTCTGGCAGTACGGCCTGTGGCAGTaGATGCACTCAAAGCTACCT +
Preference number: 4 (lower is better)
Translates to: TQALGEDARRLHWAWFWQYGLWQ*MHSKLP
Trigger: AGGTAGCTTTGAGTGCATCCACTGCCACAGGCCGTA...CTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp ACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACAGAACCACTGAGAGGATTGCAGCTGCTGGTGCCTaGCCAGGCCAGCCAGCGTAT +
Preference number: 4 (lower is better)
Translates to: TGNSELGPVLDDRTTERIAAAGA*PGQPAY
Trigger: ATACGCTGGCTGGCCTGGCCAGGCACCAGCAGCTGC...AATCCTCTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR TCA 90 bp ACACAGGCCTTAGGGGAAGATGCCCGAAGGCTCCACTGGGCTTGGTTCTGGCAGATGTCCCCTCAGCCCTaGGATGTTCATTTAGAGCTC +
Preference number: 4 (lower is better)
Translates to: TQALGEDARRLHWAWFWQMSPQP*DVHLEL
Trigger: GAGCTCTAAATGAACATCTCAGGGCTGAGGGGACAT...CTGCCAGAACCAAGCCCAGTGGAGCCTTCGGGCATCTTCCCCTAAGGCCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp AATGGTCATTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTTGTGGTGAGCCCTCAGGTTaGAGCGGTCAGCGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: NGHSKLHTRGPRCHGGFCGEPSG*SGQRRP
Trigger: GGGCCTTCGCTGACCGCTCCAACCTGAGGGCTCACC...ACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAATGACCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR TCA 90 bp AATGGTCATTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTTGTAGGCCAGCCAGCGTATaGTACGGCCTGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: NGHSKLHTRGPRCHGGFCRPASV*YGLWQW
Trigger: CCACTGCCACAGGCCGTATCATACGCTGGCTGGCCT...ACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAATGACCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR GCA 90 bp AATGGTCATTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTTGTGCGCCAAGAGAGACATaGGGGAGAAGGCCTTGGGGC +
Preference number: 4 (lower is better)
Translates to: NGHSKLHTRGPRCHGGFCAPRET*GRRPWG
Trigger: GCCCCAAGGCCTTCTCCCGCATGTCTCTCTTGGCGC...ACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAATGACCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp GTGCACACACTGTGCTCTCAAGTAAAAATGGTCATTCCAAGCTGCACACAAGGGGAGGGCCCACCCAGCTaGTTTCCTGAGGTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: VHTLCSQVKMVIPSCTQGEGPPS*FPEVLG
Trigger: GCCCAGAACCTCAGGAAACCAGCTGGGTGGGCCCTC...CCCTTGTGTGCAGCTTGGAATGACCATTTTTACTTGAGAGCACAGTGTGTGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CCA 90 bp ACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACAGAACCACTGAGAGGATTGGTTTCCTGAGGTTCTaGGCCAGAGACTCCCAGAGT +
Preference number: 4 (lower is better)
Translates to: TGNSELGPVLDDRTTERIGFLRF*ARDSQS
Trigger: ACTCTGGGAGTCTCTGGCCCAGAACCTCAGGAAACC...AATCCTCTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CAA 72 bp GCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTaGTCCAGTGTTAGCTATTTCCCAATAGGCGCTCCT +
Preference number: 4 (lower is better)
Translates to: AAHKGTQVSWWI*SSVSYFPIGAP
Trigger: AGGAGCGCCTATTGGGAAATAGCTAACACTGGACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
3UTR CAA 72 bp CTCATCTTACAGGGTGGGGCCAGGGTGTACCTGTGCTaGTGTATATACACGCATGTGTACATAAGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: LILQGGARVYLC*CIYTHVYIRGR
Trigger: CCTGCCCCTTATGTACACATGCGTGTATATACACAAGCACAGGTACACCCTGGCCCCACCCTGTAAGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 90 bp TGCAGGCAACGGCAGAGGTACTGTCCCAAGGCTGTAGGGGGTCACTaGGATTGCAAGGGGCCTCCTCATCTGGCAGGTGGCGGGATCCTG +
Preference number: 5 (lower is better)
Translates to: CRQRQRYCPKAVGGH*DCKGPPHLAGGGIL
Trigger: CAGGATCCCGCCACCTGCCAGATGAGGAGGCCCCTTGCAATCCCAGTGACCCCCTACAGCCTTGGGACAGTACCTCTGCCGTTGCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 90 bp GGCCTGGGCAGCCCGAGGGCCCACCCAGCTGGTTTCCTGAGGTTCTaGGCCAGAGACTCCCAGAGTTTCTCTGTGATTCGGCAGAAGAGG +
Preference number: 5 (lower is better)
Translates to: GLGSPRAHPAGFLRF*ARDSQSFSVIRQKR
Trigger: CCTCTTCTGCCGAATCACAGAGAAACTCTGGGAGTCTCTGGCCCAGAACCTCAGGAAACCAGCTGGGTGGGCCCTCGGGCTGCCCAGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS GCA 90 bp CAACGGCAGAGGTACTGTCCCAAGGCTGTAGGGGGTCACTGGGATTaGAAGGGGCCTCCTCATCTGGCAGGTGGCGGGATCCTGCCAACT +
Preference number: 5 (lower is better)
Translates to: QRQRYCPKAVGGHWD*KGPPHLAGGGILPT
Trigger: AGTTGGCAGGATCCCGCCACCTGCCAGATGAGGAGGCCCCTTGCAATCCCAGTGACCCCCTACAGCCTTGGGACAGTACCTCTGCCGTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 90 bp TGTAGGGGGTCACTGGGATTGCAAGGGGCCTCCTCATCTGGCAGGTaGCGGGATCCTGCCAACTCCTTGCAGGCAGAGCAGGAGCCATTA +
Preference number: 5 (lower is better)
Translates to: CRGSLGLQGASSSGR*RDPANSLQAEQEPL
Trigger: TAATGGCTCCTGCTCTGCCTGCAAGGAGTTGGCAGGATCCCGCCACCTGCCAGATGAGGAGGCCCCTTGCAATCCCAGTGACCCCCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CAA 90 bp CACTGGGCTTGGTTCTGGCAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGAGGGGGTCACTGGGATaGCAAGGGGCCTCCTCATCT +
Preference number: 5 (lower is better)
Translates to: HWAWFWQDTGNSELGPVLRGSLG*QGASSS
Trigger: AGATGAGGAGGCCCCTTGCAATCCCAGTGACCCCCT...CAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTGCCAGAACCAAGCCCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS TCA 90 bp GGATGCACTCAAAGCTACCTGGGACTCGAGATGTCCCCTCAGCCCTaGGATGTTCATTTAGAGCTCCGTCTGGGCCCAGGATTGGGGGCC +
Preference number: 5 (lower is better)
Translates to: GCTQSYLGLEMSPQP*DVHLELRLGPGLGA
Trigger: GGCCCCCAATCCTGGGCCCAGACGGAGCTCTAAATGAACATCTCAGGGCTGAGGGGACATCTCGAGTCCCAGGTAGCTTTGAGTGCATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CAA 90 bp CAGGACACAGGTAACAGTGAACTGGGCCCTGTCCTGGATGACAGAACCACTGAGGATCCTGCCAACTCCTaGCAGGCAGAGCAGGAGCCA +
Preference number: 5 (lower is better)
Translates to: QDTGNSELGPVLDDRTTEDPANS*QAEQEP
Trigger: TGGCTCCTGCTCTGCCTGCAAGGAGTTGGCAGGATC...CTCAGTGGTTCTGTCATCCAGGACAGGGCCCAGTTCACTGTTACCTGTGTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS-3UTR CAA 90 bp AATGGTCATTCCAAGCTGCACACAAGGGGACCCAGGTGTCATGGTGGATTTTGTATGCGGGAGAAGGCCTaGGGGCACACGGCGCACCTG +
Preference number: 5 (lower is better)
Translates to: NGHSKLHTRGPRCHGGFCMREKA*GHTAHL
Trigger: CAGGTGCGCCGTGTGCCCCAAGGCCTTCTCCCGCAT...ACAAAATCCACCATGACACCTGGGTCCCCTTGTGTGCAGCTTGGAATGACCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 72 bp CGGCAGAGGTACTGTCCCAAGGCTGTAGGGGGTCACTaGGATTGCAAGGGGCCTCCTCATCTGGCAGGTGGC +
Preference number: 6 (lower is better)
Translates to: RQRYCPKAVGGH*DCKGPPHLAGG
Trigger: GCCACCTGCCAGATGAGGAGGCCCCTTGCAATCCCAGTGACCCCCTACAGCCTTGGGACAGTACCTCTGCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 72 bp TCACTGGGATTGCAAGGGGCCTCCTCATCTGGCAGGTaGCGGGATCCTGCCAACTCCTTGCAGGCAGAGCAG +
Preference number: 6 (lower is better)
Translates to: SLGLQGASSSGR*RDPANSLQAEQ
Trigger: CTGCTCTGCCTGCAAGGAGTTGGCAGGATCCCGCCACCTGCCAGATGAGGAGGCCCCTTGCAATCCCAGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 72 bp AGCCCGAGGGCCCACCCAGCTGGTTTCCTGAGGTTCTaGGCCAGAGACTCCCAGAGTTTCTCTGTGATTCGG +
Preference number: 6 (lower is better)
Translates to: SPRAHPAGFLRF*ARDSQSFSVIR
Trigger: CCGAATCACAGAGAAACTCTGGGAGTCTCTGGCCCAGAACCTCAGGAAACCAGCTGGGTGGGCCCTCGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CAA 90 bp CAAGGGGCCTCCTCATCTGGCAGGTGGCGGGATCCTGCCAACTCCTaGCAGGCAGAGCAGGAGCCATTAGCTTCTCTCAGTGTCTCCAGT +
Preference number: 6 (lower is better)
Translates to: QGASSSGRWRDPANS*QAEQEPLASLSVSS
Trigger: ACTGGAGACACTGAGAGAAGCTAATGGCTCCTGCTCTGCCTGCAAGGAGTTGGCAGGATCCCGCCACCTGCCAGATGAGGAGGCCCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS GCA 72 bp GGCCAGCCAGCGTATGATACGGCCTGTGGCAGTGGATaGACTCAAAGCTACCTGGGACTCGAGATGTCCCCT +
Preference number: 6 (lower is better)
Translates to: GQPAYDTACGSG*TQSYLGLEMSP
Trigger: AGGGGACATCTCGAGTCCCAGGTAGCTTTGAGTGCATCCACTGCCACAGGCCGTATCATACGCTGGCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 72 bp AGAAGGCCTTGGGGCACACGGCGCACCTGTACTTCTTaGTACCAACGTGAGTCTGCAGGTGAGCCCTCAGGT +
Preference number: 6 (lower is better)
Translates to: RRPWGTRRTCTS*YQRESAGEPSG
Trigger: ACCTGAGGGCTCACCTGCAGACTCACGTTGGTACCAAGAAGTACAGGTGCGCCGTGTGCCCCAAGGCCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7
CDS CCA 72 bp ATACGGCCTGTGGCAGTGGATGCACTCAAAGCTACCTaGGACTCGAGATGTCCCCTCAGCCCTGAGATGTTC +
Preference number: 6 (lower is better)
Translates to: IRPVAVDALKAT*DSRCPLSPEMF
Trigger: GAACATCTCAGGGCTGAGGGGACATCTCGAGTCCCAGGTAGCTTTGAGTGCATCCACTGCCACAGGCCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006762.7