Pregenerated sensors for SNAI2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022676Ensembl transcript IDs: ENSMUST00000023356.8
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAAAGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTTCCTTTGGTTGAAATaGTTTGGCAGCAGTGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: KRKTWDTHQECLKFVFPSFLWLK*FGSSVN Trigger: ATTTACACTGCTGCCAAACCATTTCAACCAAAGGAA...GGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTCTTTaGTGGTTTTATACATACTATTTGGTTGGTAAGCACATGAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVCVCVCVTL*WFYTYYLVGKHMRK Trigger: TTTTCTCATGTGCTTACCAACCAAATAGTATGTATAAAACCACAAAAGAGTCACACACACACACACACACACACACACACACACACACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAAGAAATACTGTTCCTTTaGTTGAAATGGTTTGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKEILFL*LKWFGS Trigger: GCTGCCAAACCATTTCAACCAAAGGAACAGTATTTC...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAATTAAAAAGAAAGACATaGGACACGCACCAGGAATGT | + |
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Preference number: 2 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKLKRKT*DTHQEC Trigger: ACATTCCTGGTGCGTGTCCCATGTCTTTCTTTTTAA...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR TCA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAAGAAATGCATTCTGTTTaGGTAAACACTGGTTGCGCC | + |
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Preference number: 2 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKEMHSV*VNTGCA Trigger: GGCGCAACCAGTGTTTACTCAAACAGAATGCATTTC...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR TCA 90 bp | CTGATGACAACCAGGCATCATACATTTAAGGAAGTAAACTTGGAGTACTTTATATACTGTTCCTTTGGTTaGAATGGTTTGGCAGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: LMTTRHHTFKEVNLEYFIYCSFG*NGLAAV Trigger: CACTGCTGCCAAACCATTTCAACCAAAGGAACAGTA...TATAAAGTACTCCAAGTTTACTTCCTTAAATGTATGATGCCTGGTTGTCATCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR TCA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAAGTGTGTGTGTGTGTGTaGCTCTTTTGTGGTTTTATA | + |
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Preference number: 2 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKVCVCV*LFCGFI Trigger: TATAAAACCACAAAAGAGTCACACACACACACACAC...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR CCA 72 bp | AGTTCATCAACTACACAAGTCATTAAGACAGGCACTTaGAGGGGCATTGTATTACTGCATCCATCACATGAA | + |
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Preference number: 3 (lower is better) Translates to: SSSTTQVIKTGT*RGIVLLHPSHE Trigger: TTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGTCTTAATGACTTGTGTAGTTGATGAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR TCA 72 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTaGCTCTTTTGTGGTTTTATACATACTATTTGGTTG | + |
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Preference number: 3 (lower is better) Translates to: CVCVCVCVCVCV*LFCGFIHTIWL Trigger: CAACCAAATAGTATGTATAAAACCACAAAAGAGTCACACACACACACACACACACACACACACACACACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR CAA 90 bp | ACATTGATTTCACAAGTATTCTGGTTGAATATAGGCGTGGCTATTAACCGTACCAGAAATACTGTTCCTTaGGTTGAAATGGTTTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: TLISQVFWLNIGVAINRTRNTVP*VEMVWQ Trigger: CTGCCAAACCATTTCAACCAAAGGAACAGTATTTCT...GGTACGGTTAATAGCCACGCCTATATTCAACCAGAATACTTGTGAAATCAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR CCA 72 bp | GCACCTGAGATAGTGTCTGGCAGACTCTCTTCCTCTTaGAAACACTATTACAATTCTATTAAGAAGAAATAC | + |
|
Preference number: 3 (lower is better) Translates to: APEIVSGRLSSS*KHYYNSIKKKY Trigger: GTATTTCTTCTTAATAGAATTGTAATAGTGTTTCCAAGAGGAAGAGAGTCTGCCAGACACTATCTCAGGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| 3UTR-3UTR CAA 90 bp | AAATTTACATCAGTTCATCAACTACACAAGTCATTAAGACAGGCACTTGGAGGGTCTTTGGACTTTCATTaGTCATTTGTCATTGGAGTG | + |
|
Preference number: 3 (lower is better) Translates to: KFTSVHQLHKSLRQALGGSLDFH*SFVIGV Trigger: CACTCCAATGACAAATGACAAATGAAAGTCCAAAGA...CCCTCCAAGTGCCTGTCTTAATGACTTGTGTAGTTGATGAACTGATGTAAATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR GCA 90 bp | CTTTATAAGGCACCTGAGATAGTGTCTGGCAGACTCTCTTCCTCTTGGAAACACGCATCACAGTGCAGCTaGTTGTGTTTGGCCAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: LYKAPEIVSGRLSSSWKHASQCS*LCLASP Trigger: TGGGCTGGCCAAACACAAGCAGCTGCACTGTGATGC...GTGTTTCCAAGAGGAAGAGAGTCTGCCAGACACTATCTCAGGTGCCTTATAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTTCAGCTTCGATGGCATaGGGGTCTGAAAGCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSSASMA*GSESLG Trigger: GCCCAAGCTTTCAGACCCCCATGCCATCGAAGCTGA...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTGTTCTAATGTGTCCTTaGAGCAGCCAGGGTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSVLMCP*SSQGLE Trigger: CTCCAGACCCTGGCTGCTTCAAGGACACATTAGAAC...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR GCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTCTGCAAAAGCCCTATTaGAGTGAGGGCAAGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSLQKPY*SEGKRK Trigger: CTTTCTCTTGCCCTCACTGCAATAGGGCTTTTGCAG...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | AAAAGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCAACGATTTCCTAGACTaGGCATCACAGTGCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: KRKTWDTHQECLKFVFPSNDFLD*ASQCSC Trigger: GCAGCTGCACTGTGATGCCCAGTCTAGGAAATCGTT...GGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTTTCTTTACATCAGAGTaGGTCTGCAGATGTGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSFFTSE*VCRCAL Trigger: GAGGGCACATCTGCAGACCCACTCTGATGTAAAGAA...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTCTTTCTGAACCACTGTaGTCCTTGGATGAAGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSLSEPL*SLDEVS Trigger: TGACACTTCATCCAAGGATCACAGTGGTTCAGAAAG...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTACTAATGGGACTTTCTaGACCACTGTGATCCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSTNGTF*TTVILG Trigger: TCCAAGGATCACAGTGGTTCAGAAAGTCCCATTAGT...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | ACATTGATTTCACAAGTATTCTGGTTGAATATAGGCGTGGCTATTAACCGTACCCTGGGTAAAGGAGAGTaGAGTGGAGCTGCCGACGAT | + |
|
Preference number: 4 (lower is better) Translates to: TLISQVFWLNIGVAINRTLGKGE*SGAADD Trigger: ATCGTCGGCAGCTCCACTCCACTCTCCTTTACCCAG...GGTACGGTTAATAGCCACGCCTATATTCAACCAGAATACTTGTGAAATCAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | CTTTATAAGGCACCTGAGATAGTGTCTGGCAGACTCTCTTCCTCTTGGAAACACAACCACTGTGATCCTTaGATGAAGTGTCAGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LYKAPEIVSGRLSSSWKHNHCDP*MKCQRK Trigger: CTTCCTCTGACACTTCATCCAAGGATCACAGTGGTT...GTGTTTCCAAGAGGAAGAGAGTCTGCCAGACACTATCTCAGGTGCCTTATAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | ACATTGATTTCACAAGTATTCTGGTTGAATATAGGCGTGGCTATTAACCGTACCGGGGGTCTGAAAGCTTaGGCTGCAGTCTCTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: TLISQVFWLNIGVAINRTGGLKA*AAVSPL Trigger: AAGAGGAGAGACTGCAGCCCAAGCTTTCAGACCCCC...GGTACGGTTAATAGCCACGCCTATATTCAACCAGAATACTTGTGAAATCAATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAAGATGGCATGGGGGTCTaGAAGCTTGGGCTGCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKDGMGV*KLGLQS Trigger: AGACTGCAGCCCAAGCTTTCAGACCCCCATGCCATC...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | AGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTCTTTCTGGAGAAGGTTTTaGAGCAGTTTTTGCACTGGT | + |
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Preference number: 4 (lower is better) Translates to: RKTWDTHQECLKFVFPSSFWRRF*SSFCTG Trigger: ACCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAA...AGAGGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR GCA 90 bp | ACATTGATTTCACAAGTATTCTGGTTGAATATAGGCGTGGCTATTAACCGTACCTCTGAAAGCTTGGGCTaGAGTCTCTCCTCTTCGTCA | + |
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Preference number: 4 (lower is better) Translates to: TLISQVFWLNIGVAINRTSESLG*SLSSSS Trigger: TGACGAAGAGGAGAGACTGCAGCCCAAGCTTTCAGA...GGTACGGTTAATAGCCACGCCTATATTCAACCAGAATACTTGTGAAATCAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR GCA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAACCTTGCCACAGATCTTaGAGACACAAGGCAATGTGT | + |
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Preference number: 4 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKPCHRS*RHKAMC Trigger: ACACATTGCCTTGTGTCTGCAAGATCTGTGGCAAGG...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | AAAAGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCGAGGATCTCTGGTTTTaGTATGACAGGTATAGGGTA | + |
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Preference number: 4 (lower is better) Translates to: KRKTWDTHQECLKFVFPSEDLWF*YDRYRV Trigger: TACCCTATACCTGTCATACCAAAACCAGAGATCCTC...GGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | CATTCACTGATGACAACCAGGCATCATACATTTAAGGAAGTAAACTTGGAGTACACTTCTCAGCTTCGATaGCATGGGGGTCTGAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: HSLMTTRHHTFKEVNLEYTSQLR*HGGLKA Trigger: AGCTTTCAGACCCCCATGCCATCGAAGCTGAGAAGT...GTACTCCAAGTTTACTTCCTTAAATGTATGATGCCTGGTTGTCATCAGTGAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAAGCAGAAGCGACATTCTaGAGAAGGTTTTGGAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKAEATF*RRFWSS Trigger: ACTGCTCCAAAACCTTCTCCAGAATGTCGCTTCTGC...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAAACTGTGATCCTTGGATaGAGTGTCAGAGGAAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKTVILG*SVRGRR Trigger: CCGCCTTCCTCTGACACTTCATCCAAGGATCACAGT...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | ACATTGATTTCACAAGTATTCTGGTTGAATATAGGCGTGGCTATTAACCGTACCAAAGCCCTATTGCAGTaGGGGCAAGAGAAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TLISQVFWLNIGVAINRTKALLQ*GQEKGF Trigger: AAAGCCTTTCTCTTGCCCTCACTGCAATAGGGCTTT...GGTACGGTTAATAGCCACGCCTATATTCAACCAGAATACTTGTGAAATCAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAAACACAAGGCAATGTGTaGGTTCGAATGTGCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKTQGNV*VRMCIF Trigger: GAAGATGCACATTCGAACCCACACATTGCCTTGTGT...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | CTTTATAAGGCACCTGAGATAGTGTCTGGCAGACTCTCTTCCTCTTGGAAACACGAGCAGTTTTTGCACTaGTATTTCTTTACATCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LYKAPEIVSGRLSSSWKHEQFLH*YFFTSE Trigger: CTCTGATGTAAAGAAATACCAGTGCAAAAACTGCTC...GTGTTTCCAAGAGGAAGAGAGTCTGCCAGACACTATCTCAGGTGCCTTATAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR TCA 90 bp | CATTCACTGATGACAACCAGGCATCATACATTTAAGGAAGTAAACTTGGAGTACTTGCATAAATTGCACTaGAACTTCTCAGCTTCGATG | + |
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Preference number: 4 (lower is better) Translates to: HSLMTTRHHTFKEVNLEYLHKLH*NFSASM Trigger: CATCGAAGCTGAGAAGTTTCAGTGCAATTTATGCAA...GTACTCCAAGTTTACTTCCTTAAATGTATGATGCCTGGTTGTCATCAGTGAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR GCA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAAGACTCCTCATGTTTATaGAGAAGCGACATTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKDSSCL*RSDILE Trigger: CTCCAGAATGTCGCTTCTGCATAAACATGAGGAGTC...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CCA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAACGAGGTGAGGATCTCTaGTTTTGGTATGACAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKRGEDL*FWYDRY Trigger: ATACCTGTCATACCAAAACCAGAGATCCTCACCTCG...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS GCA 90 bp | GTGGAGTGGAGCTGCCGACGATGTCCATACAGTAATAGGGCTGTATaGTCCCGAGGTGAGGATCTCTGGTTTTGGTATGACAGGTATAGG | + |
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Preference number: 5 (lower is better) Translates to: VEWSCRRCPYSNRAV*SRGEDLWFWYDRYR Trigger: CCTATACCTGTCATACCAAAACCAGAGATCCTCACCTCGGGAGCATACAGCCCTATTACTGTATGGACATCGTCGGCAGCTCCACTCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | AAAAGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCTGCAGCTGCTTGTGTTaGGCCAGCCCAGAGAACGTA | + |
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Preference number: 5 (lower is better) Translates to: KRKTWDTHQECLKFVFPSCSCLC*ASPENV Trigger: TACGTTCTCTGGGCTGGCCAAACACAAGCAGCTGCA...GGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | CTTTATAAGGCACCTGAGATAGTGTCTGGCAGACTCTCTTCCTCTTGGAAACACGGCTTCTTGGAGGCGTaGAAATGTTTCTTGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: LYKAPEIVSGRLSSSWKHGFLEA*KCFLTR Trigger: CCTGGTCAAGAAACATTTCAACGCCTCCAAGAAGCC...GTGTTTCCAAGAGGAAGAGAGTCTGCCAGACACTATCTCAGGTGCCTTATAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 90 bp | AATAGGTCTTATTGCATAAATTGCACTGAAACTTCTCAGCTTCGATaGCATGGGGGTCTGAAAGCTTGGGCTGCAGTCTCTCCTCTTCGT | + |
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Preference number: 5 (lower is better) Translates to: NRSYCINCTETSQLR*HGGLKAWAAVSPLR Trigger: ACGAAGAGGAGAGACTGCAGCCCAAGCTTTCAGACCCCCATGCCATCGAAGCTGAGAAGTTTCAGTGCAATTTATGCAATAAGACCTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAAGCGTTGAAATGTTTCTaGACCAGGAAGGAGCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKALKCF*TRKERG Trigger: GCCGCGCTCCTTCCTGGTCAAGAAACATTTCAACGC...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | AAATTTACATCAGTTCATCAACTACACAAGTCATTAAGACAGGCACTTGGAGGGTGGGGGTCTGAAAGCTaGGGCTGCAGTCTCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: KFTSVHQLHKSLRQALGGWGSES*GCSLSS Trigger: AGAGGAGAGACTGCAGCCCAAGCTTTCAGACCCCCA...CCCTCCAAGTGCCTGTCTTAATGACTTGTGTAGTTGATGAACTGATGTAAATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | AAAAGAAAGACATGGGACACGCACCAGGAATGTTTGAAGTTTGTCTTTCCCTCCAGGCTCACATATTCCTaGTCACAGTACTTGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: KRKTWDTHQECLKFVFPSRLTYS*SQYLQL Trigger: CAGCTGCAAGTACTGTGACAAGGAATATGTGAGCCT...GGAGGGAAAGACAAACTTCAAACATTCCTGGTGCGTGTCCCATGTCTTTCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAAGCCTTGCCACAGATCTaGCAGACACAAGGCAATGTG | + |
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Preference number: 5 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKALPQI*QTQGNV Trigger: CACATTGCCTTGTGTCTGCAAGATCTGTGGCAAGGC...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 90 bp | TGTCCATACAGTAATAGGGCTGTATGCTCCCGAGGTGAGGATCTCTaGTTTTGGTATGACAGGTATAGGGTAACTTTCATAGAGATATGG | + |
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Preference number: 5 (lower is better) Translates to: CPYSNRAVCSRGEDL*FWYDRYRVTFIEIW Trigger: CCATATCTCTATGAAAGTTACCCTATACCTGTCATACCAAAACCAGAGATCCTCACCTCGGGAGCATACAGCCCTATTACTGTATGGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 90 bp | TACAGTAATAGGGCTGTATGCTCCCGAGGTGAGGATCTCTGGTTTTaGTATGACAGGTATAGGGTAACTTTCATAGAGATATGGGGAAAT | + |
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Preference number: 5 (lower is better) Translates to: YSNRAVCSRGEDLWF*YDRYRVTFIEIWGN Trigger: ATTTCCCCATATCTCTATGAAAGTTACCCTATACCTGTCATACCAAAACCAGAGATCCTCACCTCGGGAGCATACAGCCCTATTACTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | CATTCACTGATGACAACCAGGCATCATACATTTAAGGAAGTAAACTTGGAGTACAGTTCTAATGTGTCCTaGAAGCAGCCAGGGTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: HSLMTTRHHTFKEVNLEYSSNVS*KQPGSG Trigger: TCCAGACCCTGGCTGCTTCAAGGACACATTAGAACT...GTACTCCAAGTTTACTTCCTTAAATGTATGATGCCTGGTTGTCATCAGTGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | ACAGGCACTTGGAGGGGCATTGTATTACTGCATCCATCACATGAATTTTCAAAATCCTTGTCACAGTACTaGCAGCTGAACGATTTCCTA | + |
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Preference number: 5 (lower is better) Translates to: TGTWRGIVLLHPSHEFSKSLSQY*QLNDFL Trigger: TAGGAAATCGTTCAGCTGCAAGTACTGTGACAAGGA...TTTTGAAAATTCATGTGATGGATGCAGTAATACAATGCCCCTCCAAGTGCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | CTATTAAGAAGAAATACTGTTCCTTTGGTTGAAATGGTTTGGCAGCAGTGTAAAGATGTGCCCTCAGGTTaGATCTGTCTGCAAAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: LLRRNTVPLVEMVWQQCKDVPSG*ICLQKP Trigger: GGGCTTTTGCAGACAGATCAAACCTGAGGGCACATC...TTTACACTGCTGCCAAACCATTTCAACCAAAGGAACAGTATTTCTTCTTAATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | AAATTTACATCAGTTCATCAACTACACAAGTCATTAAGACAGGCACTTGGAGGGATTCTGGAGAAGGTTTaGGAGCAGTTTTTGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: KFTSVHQLHKSLRQALGGILEKV*EQFLHW Trigger: CCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAAT...CCCTCCAAGTGCCTGTCTTAATGACTTGTGTAGTTGATGAACTGATGTAAATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS-3UTR CAA 90 bp | ACATTGATTTCACAAGTATTCTGGTTGAATATAGGCGTGGCTATTAACCGTACCGTTTTGGAGCAGTTTTaGCACTGGTATTTCTTTACA | + |
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Preference number: 5 (lower is better) Translates to: TLISQVFWLNIGVAINRTVLEQF*HWYFFT Trigger: TGTAAAGAAATACCAGTGCAAAAACTGCTCCAAAAC...GGTACGGTTAATAGCCACGCCTATATTCAACCAGAATACTTGTGAAATCAATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS TCA 72 bp | GTCAGAGGAAGGCGGGGGACTTACACGCCCCAAGGATaGGGAGTATCCAGTAAGAGGAGAAAGGCCACTGGG | + |
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Preference number: 6 (lower is better) Translates to: VRGRRGTYTPQG*GVSSKRRKATG Trigger: CCCAGTGGCCTTTCTCCTCTTACTGGATACTCCTCATCCTTGGGGCGTGTAAGTCCCCCGCCTTCCTCTGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS GCA 72 bp | TCAGCTTCGATGGCATGGGGGTCTGAAAGCTTGGGCTaGAGTCTCTCCTCTTCGTCACTAATGGGACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SASMAWGSESLG*SLSSSSLMGLS Trigger: AGAAAGTCCCATTAGTGACGAAGAGGAGAGACTGCAGCCCAAGCTTTCAGACCCCCATGCCATCGAAGCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS GCA 72 bp | AGCTGCCGACGATGTCCATACAGTAATAGGGCTGTATaGTCCCGAGGTGAGGATCTCTGGTTTTGGTATGAC | + |
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Preference number: 6 (lower is better) Translates to: SCRRCPYSNRAV*SRGEDLWFWYD Trigger: GTCATACCAAAACCAGAGATCCTCACCTCGGGAGCATACAGCCCTATTACTGTATGGACATCGTCGGCAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 72 bp | TTGTCACAGTACTTGCAGCTGAACGATTTCCTAGACTaGGCATCACAGTGCAGCTGCTTGTGTTTGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LSQYLQLNDFLD*ASQCSCLCLAS Trigger: GCTGGCCAAACACAAGCAGCTGCACTGTGATGCCCAGTCTAGGAAATCGTTCAGCTGCAAGTACTGTGACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 72 bp | TATTGCATAAATTGCACTGAAACTTCTCAGCTTCGATaGCATGGGGGTCTGAAAGCTTGGGCTGCAGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: YCINCTETSQLR*HGGLKAWAAVS Trigger: AGAGACTGCAGCCCAAGCTTTCAGACCCCCATGCCATCGAAGCTGAGAAGTTTCAGTGCAATTTATGCAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 72 bp | AGGGCTGTATGCTCCCGAGGTGAGGATCTCTGGTTTTaGTATGACAGGTATAGGGTAACTTTCATAGAGATA | + |
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Preference number: 6 (lower is better) Translates to: RAVCSRGEDLWF*YDRYRVTFIEI Trigger: TATCTCTATGAAAGTTACCCTATACCTGTCATACCAAAACCAGAGATCCTCACCTCGGGAGCATACAGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 72 bp | AGTAATAGGGCTGTATGCTCCCGAGGTGAGGATCTCTaGTTTTGGTATGACAGGTATAGGGTAACTTTCATA | + |
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Preference number: 6 (lower is better) Translates to: SNRAVCSRGEDL*FWYDRYRVTFI Trigger: TATGAAAGTTACCCTATACCTGTCATACCAAAACCAGAGATCCTCACCTCGGGAGCATACAGCCCTATTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CCA 72 bp | CATGTTTATGCAGAAGCGACATTCTGGAGAAGGTTTTaGAGCAGTTTTTGCACTGGTATTTCTTTACATCAG | + |
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Preference number: 6 (lower is better) Translates to: HVYAEATFWRRF*SSFCTGISLHQ Trigger: CTGATGTAAAGAAATACCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAATGTCGCTTCTGCATAAACATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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| CDS CAA 72 bp | TCATGTTTATGCAGAAGCGACATTCTGGAGAAGGTTTaGGAGCAGTTTTTGCACTGGTATTTCTTTACATCA | + |
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Preference number: 6 (lower is better) Translates to: SCLCRSDILEKV*EQFLHWYFFTS Trigger: TGATGTAAAGAAATACCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAATGTCGCTTCTGCATAAACATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023356.8 |
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