Pregenerated sensors for SNAI1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042821Ensembl transcript IDs: ENSMUST00000052631.8
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TATGGCTCGAAGCAGCTGTGTCCAGAGGCTACACCTCATGAATACTaGGGGGTAGGAGGCTCTGGGCGGGTACAAAGGCACTCCATCAGC | + |
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Preference number: 1 (lower is better) Translates to: YGSKQLCPEATPHEY*GVGGSGRVQRHSIS Trigger: GCTGATGGAGTGCCTTTGTACCCGCCCAGAGCCTCCTACCCCTCAGTATTCATGAGGTGTAGCCTCTGGACACAGCTGCTTCGAGCCATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR TCA 90 bp | TTAGTTCTATGGCTCGAAGCAGCTGTGTCCAGAGGCTACACCTCATaGATACTGAGGGGTAGGAGGCTCTGGGCGGGTACAAAGGCACTC | + |
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Preference number: 1 (lower is better) Translates to: LVLWLEAAVSRGYTS*ILRGRRLWAGTKAL Trigger: GAGTGCCTTTGTACCCGCCCAGAGCCTCCTACCCCTCAGTATTCATGAGGTGTAGCCTCTGGACACAGCTGCTTCGAGCCATAGAACTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR CCA 90 bp | CTGAAGCACCCCACTTGGCCCCTAACAAGTGATGGCCATTATTCATaGTCCCTTCTGAGACAGTTAAACTGCTGTGAAACAGGTGTCACC | + |
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Preference number: 1 (lower is better) Translates to: LKHPTWPLTSDGHYS*SLLRQLNCCETGVT Trigger: GGTGACACCTGTTTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAATGGCCATCACTTGTTAGGGGCCAAGTGGGGTGCTTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR-3UTR CCA 90 bp | TATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTGAAACAGGTGTCACCAGGCACCCTGCTGAGGCATaGTTACAGCTGGACGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: YSWSLLRQLNCCETGVTRHPAEA*LQLDGV Trigger: CACCCCGTCCAGCTGTAACCATGCCTCAGCAGGGTG...CCTGGTGACACCTGTTTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR-3UTR CCA 90 bp | CTGAGACAGTTAAACTGCTGTGAAACAGGTGTCACCAGGACAAATGGGGGCGGGTTGGCTTTAGTTCTATaGCTCGAAGCAGCTGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: LRQLNCCETGVTRTNGGGLALVL*LEAAVS Trigger: GGACACAGCTGCTTCGAGCCATAGAACTAAAGCCAA...CCCGCCCCCATTTGTCCTGGTGACACCTGTTTCACAGCAGTTTAACTGTCTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGATGGCCATTATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTGAAAGGGAGGTAGGGAAGTaGGGTCCCCTGAGCGGGGTT | + |
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Preference number: 2 (lower is better) Translates to: TSDGHYSWSLLRQLNCCEREVGK*GPLSGV Trigger: AACCCCGCTCAGGGGACCCCACTTCCCTACCTCCCT...TTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAATGGCCATCACTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGATGGCCATTATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTGAATGTCACCAGGACAAATaGGGGCGGGGGCTGAAACAG | + |
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Preference number: 2 (lower is better) Translates to: TSDGHYSWSLLRQLNCCECHQDK*GRGLKQ Trigger: CTGTTTCAGCCCCCGCCCCCATTTGTCCTGGTGACA...TTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAATGGCCATCACTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR GCA 72 bp | GCTCTGGGCGGGTACAAAGGCACTCCATCAGCCACCTaGGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACC | + |
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Preference number: 3 (lower is better) Translates to: ALGGYKGTPSAT*GKGHQESQAGT Trigger: GGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTGATGGAGTGCCTTTGTACCCGCCCAGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR CCA 72 bp | CCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGACATaGACGCCACAGGTCCCCGGACCAAGGCTGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: PPREPSRNQVQT*TPQVPGPRLEG Trigger: TCCTTCCAGCCTTGGTCCGGGGACCTGTGGCGTCCATGTCTGGACCTGGTTCCTGCTTGGCTCTCTTGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR-3UTR CAA 90 bp | CACCTGGACATGTGTCCAGTAACCACCCTGCTGAGGCATGGTTACAGCTGGACGTGGCCTGAAGGGTCCTaGAGGGAGGTAGGGAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: HLDMCPVTTLLRHGYSWTWPEGS*REVGKW Trigger: CCACTTCCCTACCTCCCTCAAGGACCCTTCAGGCCA...CGTCCAGCTGTAACCATGCCTCAGCAGGGTGGTTACTGGACACATGTCCAGGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR TCA 72 bp | GGCCAGGCTGAAGCACCCCACTTGGCCCCTAACAAGTaGTGGCCATTATTCATGGTCCCTTCTGAGACAGTT | + |
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Preference number: 3 (lower is better) Translates to: GQAEAPHLAPNK*WPLFMVPSETV Trigger: AACTGTCTCAGAAGGGACCATGAATAATGGCCATCACTTGTTAGGGGCCAAGTGGGGTGCTTCAGCCTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR CCA 72 bp | TCAAGCTTCCCAGCCAGTGGGTTGGCTTTAGTTCTATaGCTCGAAGCAGCTGTGTCCAGAGGCTACACCTCA | + |
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Preference number: 3 (lower is better) Translates to: SSFPASGLALVL*LEAAVSRGYTS Trigger: TGAGGTGTAGCCTCTGGACACAGCTGCTTCGAGCCATAGAACTAAAGCCAACCCACTGGCTGGGAAGCTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR TCA 72 bp | TATTGCATAGTCTGTTGTACCTCAAAGAAGGTGGCCTaGAGGGTCCTTGAGGGAGGTAGGGAAGTGGGGTCC | + |
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Preference number: 3 (lower is better) Translates to: YCIVCCTSKKVA*RVLEGGREVGS Trigger: GGACCCCACTTCCCTACCTCCCTCAAGGACCCTTCAGGCCACCTTCTTTGAGGTACAACAGACTATGCAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR TCA 72 bp | TTATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTaGAACAGGTGTCACCAGGACAAATGGGGGCGGGGG | + |
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Preference number: 3 (lower is better) Translates to: LFMVPSETVKLL*NRCHQDKWGRG Trigger: CCCCCGCCCCCATTTGTCCTGGTGACACCTGTTTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR GCA 72 bp | GGCCATTATTCATGGTCCCTTCTGAGACAGTTAAACTaGTGTGAAACAGGTGTCACCAGGACAAATGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: GHYSWSLLRQLN*CETGVTRTNGG Trigger: GCCCCCATTTGTCCTGGTGACACCTGTTTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAATGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | AGGTCCAGACATGGACGCCACAGGTCCCCGGACCAAGGCTGGAAGGAGTCCTGGGCAGCTCGCTATAGTTaGGCTTCCGGCGGGGGTCGG | + |
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Preference number: 4 (lower is better) Translates to: RSRHGRHRSPDQGWKESWAARYS*ASGGGR Trigger: CCGACCCCCGCCGGAAGCCCAACTATAGCGAGCTGC...CCAGGACTCCTTCCAGCCTTGGTCCGGGGACCTGTGGCGTCCATGTCTGGACCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | GGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGACATGGACGCCACGGCGGGCTGGGCGGCTaGGAGCTTTTGCCACTGTCC | + |
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Preference number: 4 (lower is better) Translates to: GKGHQESQAGTRSRHGRHGGLGG*ELLPLS Trigger: GGACAGTGGCAAAAGCTCCCAGCCGCCCAGCCCGCC...GTGGCGTCCATGTCTGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | AGACAGTTAAACTGCTGTGAAACAGGTGTCACCAGGACAAATGGGGGCGGGGGCCCTCGGGCGGAGGGATaGCGGCCAGCAGGTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RQLNCCETGVTRTNGGGGPRAEG*RPAGGP Trigger: AGGCCCACCTGCTGGCCGCCATCCCTCCGCCCGAGG...GCCCCCGCCCCCATTTGTCCTGGTGACACCTGTTTCACAGCAGTTTAACTGTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | CATCAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGCCTGGCCAGCTGCTTaGGAAGTTGGCCCAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: HQPPAAKATKRAKQEPGPAWPAA*EVGPSQ Trigger: CTGGCTTGGGCCAACTTCCCAAGCAGCTGGCCAGGC...TGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTGATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | CATCAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAAGCTGCTTGGGAAGTTaGCCCAAGCCAGGGAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: HQPPAAKATKRAKQEPGPSCLGS*PKPGKA Trigger: CGCCTTCCCTGGCTTGGGCCAACTTCCCAAGCAGCT...TGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTGATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | CATCAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGGTGGGCACGCAGGTTaGAGCGGTCAGCAAAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: HQPPAAKATKRAKQEPGPGGHAG*SGQQKH Trigger: GTGCTTTTGCTGACCGCTCCAACCTGCGTGCCCACC...TGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR TCA 90 bp | GGGTACAAAGGCACTCCATCAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAAGGGCTGCTGGAAGGTaGACTCCACACACGCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: GYKGTPSATCGKGHQESQRAAGR*TPHTRP Trigger: AGGACGCGTGTGTGGAGTTCACCTTCCAGCAGCCCT...TTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTGATGGAGTGCCTTTGTACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR GCA 90 bp | GCTCTGGGCGGGTACAAAGGCACTCCATCAGCCACCTGCGGCAAAGGCCACCAACCTTTCCACAGGTCGTaGAGACACAAGGCAGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: ALGGYKGTPSATCGKGHQPFHRS*RHKAAC Trigger: ACACGCTGCCTTGTGTCTGCACGACCTGTGGAAAGG...TTGGTGGCCTTTGCCGCAGGTGGCTGATGGAGTGCCTTTGTACCCGCCCAGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | CCAAGCAGGAACCAGGTCCAGACATGGACGCCACAGGTCCCCGGACCAAGGCTGAAAGCACGGTTGCAGTaGGAGCAGGAGAATGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PSRNQVQTWTPQVPGPRLKARLQ*EQENGF Trigger: GAAGCCATTCTCCTGCTCCCACTGCAACCGTGCTTT...CAGCCTTGGTCCGGGGACCTGTGGCGTCCATGTCTGGACCTGGTTCCTGCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR GCA 90 bp | CATCAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCACAGCAAAAGCACGGTTaGAGTGGGAGCAGGAGAATG | + |
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Preference number: 4 (lower is better) Translates to: HQPPAAKATKRAKQEPGPQQKHG*SGSRRM Trigger: CATTCTCCTGCTCCCACTGCAACCGTGCTTTTGCTG...TGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR GCA 90 bp | AACAGTTGCCCAGGCCCAGGGGCACCTGGACATGTGTCCAGTAACCACCCTGCTCAGCCAGACTCTTGGTaGTTGTGGAGCAAGGACATG | + |
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Preference number: 4 (lower is better) Translates to: NSCPGPGAPGHVSSNHPAQPDSW*LWSKDM Trigger: CATGTCCTTGCTCCACAAGCACCAAGAGTCTGGCTG...AGCAGGGTGGTTACTGGACACATGTCCAGGTGCCCCTGGGCCTGGGCAACTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| 3UTR CAA 72 bp | TCCCCTGAGCGGGGTTCAAGCTTCCCAGCCAGTGGGTaGGCTTTAGTTCTATGGCTCGAAGCAGCTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SPERGSSFPASG*ALVLWLEAAVS Trigger: GGACACAGCTGCTTCGAGCCATAGAACTAAAGCCAACCCACTGGCTGGGAAGCTTGAACCCCGCTCAGGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR GCA 90 bp | GGGGAACTATTGCATAGTCTGTTGTACCTCAAAGAAGGTGGCCTGAAGGGTCCTGAGAGCCTGGCCAGCTaGTTGGGAAGTTGGCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: GELLHSLLYLKEGGLKGPESLAS*LGSWPK Trigger: CTTGGGCCAACTTCCCAAGCAGCTGGCCAGGCTCTC...AGGACCCTTCAGGCCACCTTCTTTGAGGTACAACAGACTATGCAATAGTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CCA 90 bp | GGGGAACTATTGCATAGTCTGTTGTACCTCAAAGAAGGTGGCCTGAAGGGTCCTTGGCCACCGAGAGCCTaGCCAGCTGCTTGGGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: GELLHSLLYLKEGGLKGPWPPRA*PAAWEV Trigger: AACTTCCCAAGCAGCTGGCCAGGCTCTCGGTGGCCA...AGGACCCTTCAGGCCACCTTCTTTGAGGTACAACAGACTATGCAATAGTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR TCA 90 bp | ACAAGTGATGGCCATTATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTGAAGGTCGGACGGCTTCCTaGCCAGGAAGGAGCGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: TSDGHYSWSLLRQLNCCEGRTAS*PGRSAA Trigger: TGCCGCGCTCCTTCCTGGTCAGGAAGCCGTCCGACC...TTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAATGGCCATCACTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR GCA 90 bp | TATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTGAAACAGGTGTCACCAGGTGTGGAGCAAGGACATaGGGGAGAAGGTTCGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: YSWSLLRQLNCCETGVTRCGART*GRRFGH Trigger: GTGCCCGAACCTTCTCCCGCATGTCCTTGCTCCACA...CCTGGTGACACCTGTTTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS CCA 90 bp | GCGAGGTCAGCTCTACGGCCTTGGGGCTCTCCCGCAGCGGGAGGGTaGCCCAGGCAACCGGCCGCACTTGGGGTACCAGGAGAGAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: ARSALRPWGSPAAGG*PRQPAALGVPGESP Trigger: GGGACTCTCTCCTGGTACCCCAAGTGCGGCCGGTTGCCTGGGCCACCCTCCCGCTGCGGGAGAGCCCCAAGGCCGTAGAGCTGACCTCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | CAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGACCGCGACTGGGGGTCCTaGGCCACCGAGAGCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: QPPAAKATKRAKQEPGPDRDWGS*ATESLA Trigger: GGCCAGGCTCTCGGTGGCCAAGGACCCCCAGTCGCG...GTCTGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | AACAGTTGCCCAGGCCCAGGGGCACCTGGACATGTGTCCAGTAACCACCCTGCTAGCGAAGCGGCGGGGTaGAGGACCTCGGGCGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: NSCPGPGAPGHVSSNHPASEAAG*RTSGGG Trigger: CCCTCCGCCCGAGGTCCTCAACCCCGCCGCTTCGCT...AGCAGGGTGGTTACTGGACACATGTCCAGGTGCCCCTGGGCCTGGGCAACTGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | GCTCTGGGCGGGTACAAAGGCACTCCATCAGCCACCTGCGGCAAAGGCCACCAACACATCCGAGTGGGTTaGGAGGTGGGCACGCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: ALGGYKGTPSATCGKGHQHIRVG*EVGTQV Trigger: AACCTGCGTGCCCACCTCCAAACCCACTCGGATGTG...TTGGTGGCCTTTGCCGCAGGTGGCTGATGGAGTGCCTTTGTACCCGCCCAGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | CCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGACATGAGGTGGGCACGCAGGTaGGAGCGGTCAGCAAAAGCA | + |
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Preference number: 5 (lower is better) Translates to: PPAAKATKRAKQEPGPDMRWARR*ERSAKA Trigger: TGCTTTTGCTGACCGCTCCAACCTGCGTGCCCACCT...CATGTCTGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | GGGGAACTATTGCATAGTCTGTTGTACCTCAAAGAAGGTGGCCTGAAGGGTCCTAGCCTGGCCAGCTGCTaGGGAAGTTGGCCCAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: GELLHSLLYLKEGGLKGPSLASC*GSWPKP Trigger: TGGCTTGGGCCAACTTCCCAAGCAGCTGGCCAGGCT...AGGACCCTTCAGGCCACCTTCTTTGAGGTACAACAGACTATGCAATAGTTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | AGGTGTCACCAGGACAAATGGGGGCGGGGGCTGAAACAGTTGCCCAGGCCCAGGAGGCTGAGGTACTCCTaGTTACAATATTTGCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: RCHQDKWGRGLKQLPRPRRLRYS*LQYLQL Trigger: CAACTGCAAATATTGTAACAAGGAGTACCTCAGCCT...CCTGGGCCTGGGCAACTGTTTCAGCCCCCGCCCCCATTTGTCCTGGTGACACCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | CAGCCACCTGCGGCAAAGGCCACCAAGAGAGCCAAGCAGGAACCAGGTCCAGACTTACAATATTTGCAGTaGAAGATCTTCCGCGACTGG | + |
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Preference number: 5 (lower is better) Translates to: QPPAAKATKRAKQEPGPDLQYLQ*KIFRDW Trigger: CCAGTCGCGGAAGATCTTCAACTGCAAATATTGTAA...GTCTGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS-3UTR CAA 90 bp | ACAAGTGATGGCCATTATTCATGGTCCCTTCTGAGACAGTTAAACTGCTGTGAAGGCGGCTGGGAGCTTTaGCCACTGTCCTCATCGGAC | + |
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Preference number: 5 (lower is better) Translates to: TSDGHYSWSLLRQLNCCEGGWEL*PLSSSD Trigger: GTCCGATGAGGACAGTGGCAAAAGCTCCCAGCCGCC...TTCACAGCAGTTTAACTGTCTCAGAAGGGACCATGAATAATGGCCATCACTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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| CDS CAA 72 bp | CCGCAGCGGGAGGGTGGCCCAGGCAACCGGCCGCACTaGGGGTACCAGGAGAGAGTCCCAGATGAGGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: PQREGGPGNRPH*GYQERVPDEGG Trigger: CCCACCCTCATCTGGGACTCTCTCCTGGTACCCCAAGTGCGGCCGGTTGCCTGGGCCACCCTCCCGCTGCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052631.8 |
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