Pregenerated sensors for SMU1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028409Ensembl transcript IDs: ENSMUST00000030117.5
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATGCTAGGACGCAGACATGGAAAAGTAGTCGGAATACATGGCCATaGCCTGCACTTAAGTACATGCTCCTGGGCTGCACCGTAAAGGCT | + |
|
Preference number: 1 (lower is better) Translates to: YARTQTWKSSRNTWP*PALKYMLLGCTVKA Trigger: AGCCTTTACGGTGCAGCCCAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCCATGTCTGCGTCCTAGCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| 3UTR-3UTR CCA 90 bp | GAAAGGCACCCAAGCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTGGAAAGTAGTCGGAATACATaGCCATGCCCTGCACTTAAG | + |
|
Preference number: 2 (lower is better) Translates to: ERHPSIKSHKPSNLFKLESSRNT*PCPALK Trigger: CTTAAGTGCAGGGCATGGCCATGTATTCCGACTACT...TTCCAGTTTGAACAAGTTAGAGGGTTTATGGGATTTGATGCTTGGGTGCCTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| 3UTR GCA 72 bp | ACGCAGACATGGAAAAGTAGTCGGAATACATGGCCATaGCCTGCACTTAAGTACATGCTCCTGGGCTGCACC | + |
|
Preference number: 3 (lower is better) Translates to: TQTWKSSRNTWP*PALKYMLLGCT Trigger: GGTGCAGCCCAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCCATGTCTGCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| 3UTR TCA 72 bp | TGGAGGATCAAGGATAGCGACTCTCCCTCCCCCTTATaGGCACTTATGGTAAAGAAAGGTTTAAGTTTATTA | + |
|
Preference number: 3 (lower is better) Translates to: WRIKDSDSPSPL*ALMVKKGLSLL Trigger: TAATAAACTTAAACCTTTCTTTACCATAAGTGCTCATAAGGGGGAGGGAGAGTCGCTATCCTTGATCCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| 3UTR CCA 72 bp | GCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTaGAATACAAGAGCAGGGCTGAACATAAAGAGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: ASNPINPLTCSN*NTRAGLNIKSR Trigger: TCTGCTCTTTATGTTCAGCCCTGCTCTTGTATTCCAGTTTGAACAAGTTAGAGGGTTTATGGGATTTGATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR TCA 90 bp | TGGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGAAGGTGGCACCACGCTaGCTTCCCCAGCTAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: WKSSRNTWPCPALKYMLLKVAPR*LPQLKP Trigger: AGGCTTTAGCTGGGGAAGTCAGCGTGGTGCCACCTT...CAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | TGGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGCTGACGATCTGGCCCTaGATGTTCATGATGACCACT | + |
|
Preference number: 4 (lower is better) Translates to: WKSSRNTWPCPALKYMLLLTIWP*MFMMTT Trigger: AGTGGTCATCATGAACATGCAGGGCCAGATCGTCAG...CAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR CCA 90 bp | GGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGGAAGTTATCCTGGGCCTaGTACTTCAGATCCTTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: GKVVGIHGHALHLSTCSWKLSWA*YFRSFL Trigger: CAGGAAGGATCTGAAGTACCAGGCCCAGGATAACTT...CCAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | GGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGGCGCTCTGGTTGTGTTTaGTTTAACATAATCATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GKVVGIHGHALHLSTCSWRSGCV*FNIIMG Trigger: CCCCATGATTATGTTAAAGCAAACACAACCAGAGCG...CCAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR TCA 90 bp | AGTCTGTTTTACACTCACTACCAGACTGGAGGATCAAGGATAGCGACTCTCCCTAAACACTGTCCACTCTaGATCTTCCAAACCTTGATC | + |
|
Preference number: 4 (lower is better) Translates to: SLFYTHYQTGGSRIATLPKHCPL*IFQTLI Trigger: GATCAAGGTTTGGAAGATTCAGAGTGGACAGTGTTT...AGGGAGAGTCGCTATCCTTGATCCTCCAGTCTGGTAGTGAGTGTAAAACAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | GGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGGTGTCCAAACTTAATATaGCTGCTCAACTGTGTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: GKVVGIHGHALHLSTCSWCPNLI*LLNCVG Trigger: TCCAACACAGTTGAGCAGGCATATTAAGTTTGGACA...CCAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR TCA 90 bp | TCTGAAATACTAATTAGAATCTGTGTGTGTCACCAAGCCTGTTTCATATTAGTCGTCCCAGCAATGCCATaGGACGAGAAGGTGGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: SEILIRICVCHQACFILVVPAMP*DEKVAP Trigger: TGGTGCCACCTTCTCGTCTCATGGCATTGCTGGGAC...GACTAATATGAAACAGGCTTGGTGACACACACAGATTCTAATTAGTATTTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR TCA 90 bp | AAAGGCACCCAAGCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTGGAATCATCAACAGAGCCAGTaGCCAGATACTGACCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: KGTQASNPINPLTCSNWNHQQSQ*PDTDHL Trigger: CAGATGGTCAGTATCTGGTCACTGGCTCTGTTGATG...ATTCCAGTTTGAACAAGTTAGAGGGTTTATGGGATTTGATGCTTGGGTGCCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR CCA 90 bp | AGAATGAGGAGGCTGACAAGAGAGCAAAAACTTTTTCATGTCTGCCTTCCTAAGTTTGCTACTTCCATCTaGATATGCCTCACGAGGATC | + |
|
Preference number: 4 (lower is better) Translates to: RMRRLTREQKLFHVCLPKFATSI*ICLTRI Trigger: GATCCTCGTGAGGCATATCCAGATGGAAGTAGCAAA...CTTAGGAAGGCAGACATGAAAAAGTTTTTGCTCTCTTGTCAGCCTCCTCATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | AGAATGAGGAGGCTGACAAGAGAGCAAAAACTTTTTCATGTCTGCCTTCCTAAGCCACGAAACTTTCAATaGTGTCCACAGTATTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RMRRLTREQKLFHVCLPKPRNFQ*CPQYSE Trigger: CTCTGAATACTGTGGACAGCATTGAAAGTTTCGTGG...CTTAGGAAGGCAGACATGAAAAAGTTTTTGCTCTCTTGTCAGCCTCCTCATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | AGAATGAGGAGGCTGACAAGAGAGCAAAAACTTTTTCATGTCTGCCTTCCTAAGTTACACACAACGAAGTaGTCTGGGTTTTTAGGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: RMRRLTREQKLFHVCLPKLHTTK*SGFLGS Trigger: GCTTCCTAAAAACCCAGAGCACTTCGTTGTGTGTAA...CTTAGGAAGGCAGACATGAAAAAGTTTTTGCTCTCTTGTCAGCCTCCTCATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR TCA 90 bp | TCTGAAATACTAATTAGAATCTGTGTGTGTCACCAAGCCTGTTTCATATTAGTCGAAGCACTGAGGATCTaGCTGCTGTCCTTGGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: SEILIRICVCHQACFILVEALRI*LLSLEK Trigger: CTTTTCCAAGGACAGCAGTCAGATCCTCAGTGCTTC...GACTAATATGAAACAGGCTTGGTGACACACACAGATTCTAATTAGTATTTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | AAAGGCACCCAAGCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTGGAATACTTCCATCTGGATATaGCTCACGAGGATCAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: KGTQASNPINPLTCSNWNTSIWI*LTRIKV Trigger: TACTTTGATCCTCGTGAGGCATATCCAGATGGAAGT...ATTCCAGTTTGAACAAGTTAGAGGGTTTATGGGATTTGATGCTTGGGTGCCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | TCTGAAATACTAATTAGAATCTGTGTGTGTCACCAAGCCTGTTTCATATTAGTCGCAATCAAATTCTGGTaGGGGTGGTGTGCGATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SEILIRICVCHQACFILVAIKFW*GWCAIP Trigger: TGGAATCGCACACCACCCGCACCAGAATTTGATTGC...GACTAATATGAAACAGGCTTGGTGACACACACAGATTCTAATTAGTATTTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR GCA 90 bp | AGAATGAGGAGGCTGACAAGAGAGCAAAAACTTTTTCATGTCTGCCTTCCTAAGGACACCTTTACTATGTaGCCTTTCAAATCTTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: RMRRLTREQKLFHVCLPKDTFTM*PFKSSQ Trigger: TTGAGAAGATTTGAAAGGGCACATAGTAAAGGTGTC...CTTAGGAAGGCAGACATGAAAAAGTTTTTGCTCTCTTGTCAGCCTCCTCATTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR CCA 90 bp | TCTGAAATACTAATTAGAATCTGTGTGTGTCACCAAGCCTGTTTCATATTAGTCAAGCTTCTGACGATCTaGCCCTGCATGTTCATGATG | + |
|
Preference number: 4 (lower is better) Translates to: SEILIRICVCHQACFILVKLLTI*PCMFMM Trigger: CATCATGAACATGCAGGGCCAGATCGTCAGAAGCTT...GACTAATATGAAACAGGCTTGGTGACACACACAGATTCTAATTAGTATTTCAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR TCA 90 bp | AAAGGCACCCAAGCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTGGAATCCAGATTTTAAACCATaGATTCGTATTGTCTGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: KGTQASNPINPLTCSNWNPDFKP*IRIVWS Trigger: TGACCAGACAATACGAATTCATGGTTTAAAATCTGG...ATTCCAGTTTGAACAAGTTAGAGGGTTTATGGGATTTGATGCTTGGGTGCCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR CAA 90 bp | GGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGGAGCGTTCTCTCCAGCTaGCCAGTGACTGTGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: GKVVGIHGHALHLSTCSWSVLSS*PVTVLK Trigger: CTTCAGCACAGTCACTGGCAAGCTGGAGAGAACGCT...CCAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||
| CDS-3UTR CAA 90 bp | TGGAAAAGTAGTCGGAATACATGGCCATGCCCTGCACTTAAGTACATGCTCCTGAACCATGAATTCGTATaGTCTGGTCAAAAGAAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: WKSSRNTWPCPALKYMLLNHEFV*SGQKKH Trigger: GTGCTTCTTTTGACCAGACAATACGAATTCATGGTT...CAGGAGCATGTACTTAAGTGCAGGGCATGGCCATGTATTCCGACTACTTTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030117.5 |
||