Pregenerated sensors for SMTNL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027077Ensembl transcript IDs: ENSMUST00000028471.6
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGCAAGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTaGTACTGGTGTCACCTGCTTTATGTCTGGTGGTGCGAAAGCACC | + |
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Preference number: 1 (lower is better) Translates to: QQGMRGILKKHFRCG*YWCHLLYVWWCEST Trigger: GGTGCTTTCGCACCACCAGACATAAAGCAGGTGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCTTGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| 3UTR-3UTR GCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGCTTTATGTCTGGTGGTaGGAAAGCACCCCGAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: PVTYVWLVGVRGAARNERLYVWW*ESTPRP Trigger: TGGCCTCGGGGTGCTTTCGCACCACCAGACATAAAG...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| 3UTR-3UTR CCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCAGCCACGGTTGGCAGCTaGGCTCCGCTTCCTCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: RNERNFEKALSVRLILVSATVGS*APLPPP Trigger: GGGAGGAGGAAGCGGAGCCCAGCTGCCAACCGTGGC...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| 3UTR CAA 90 bp | GCAGCAAGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTaGATACTGGTGTCACCTGCTTTATGTCTGGTGGTGCGAAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: AARNERNFEKALSVR*ILVSPALCLVVRKH Trigger: GTGCTTTCGCACCACCAGACATAAAGCAGGTGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCTTGCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| 3UTR CCA 72 bp | ATGTCTGGTGGTGCGAAAGCACCCCGAGGCCACGGTTaGCAGCTGGGCTCCGCTTCCTCCTCCCGCATGGCT | + |
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Preference number: 3 (lower is better) Translates to: MSGGAKAPRGHG*QLGSASSSRMA Trigger: AGCCATGCGGGAGGAGGAAGCGGAGCCCAGCTGCCAACCGTGGCCTCGGGGTGCTTTCGCACCACCAGACAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGTCGAGAAAGCTAGGGTaGAGTTGTGCCGGCGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERSRKLG*SCAGAL Trigger: CAAAGCGCCGGCACAACTTCACCCTAGCTTTCTCGA...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGGCTCTTGCTCTTCAGTaGGACTCTCTGGCTCCACCA | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERALALQ*DSLAPP Trigger: TGGTGGAGCCAGAGAGTCCCACTGAAGAGCAAGAGC...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGCGAAGATTCACTGGCTaGAGGACTGGTCTCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERRRFTG*RTGLSC Trigger: ACAGGAGAGACCAGTCCTTCAGCCAGTGAATCTTCG...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGCGTAGTTTCTCGTCATaGCCCGGCACCACTCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERRSFSS*PGTTPK Trigger: TTTTGGAGTGGTGCCGGGCCATGACGAGAAACTACG...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGTTCTCATCAACCTTCTaGTTCTCCGAGGCCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERFSSTF*FSEASM Trigger: CATGCTGGCCTCGGAGAAGCAGAAGGTTGATGAGAA...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGCCTTGGGTTCAGGCTTaGCTTTGTCATTCACATCCG | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERPWVQA*LCHSHP Trigger: CGGATGTGAATGACAAAGCCAAGCCTGAACCCAAGG...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGTTCAGTGGGACTCTCTaGCTCCACCAACTCCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERFSGTL*LHQLLC Trigger: ACAAAGGAGTTGGTGGAGCCAGAGAGTCCCACTGAA...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTCCGGAACAGTGCAGTaGGGCCAGAGGCTGCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGSGTVQ*GQRLPR Trigger: GCGGGGCAGCCTCTGGCCCCACTGCACTGTTCCGGA...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGCCAATCCATCTGGGCTaGGGCTGGGCCCCTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWPIHLG*GWAPHL Trigger: CAGATGAGGGGCCCAGCCTCAGCCCAGATGGATTGG...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGTGCAGCCCTTTCTTCTaGTTCATTTTCCTTACCCTG | + |
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Preference number: 4 (lower is better) Translates to: PVTYVWLVGVRGAARNERCSPFF*FIFLTL Trigger: CAGGGTAAGGAAAATGAATCAGAAGAAAGGGCTGCA...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGTGTGTTCCGGAACAGTaGAGTGGGGCCAGAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWCVPEQ*SGARGC Trigger: GCAGCCTCTGGCCCCACTGCACTGTTCCGGAACACA...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGGATGGCTGCCCCGGCTaGCTTTGTGTTCCGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWDGCPG*LCVPEQ Trigger: CTGTTCCGGAACACAAAGGCAGCCGGGGCAGCCATC...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGGACACCACCGATGGCTaGCCCGGCTGCCTTTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWDTTDG*PGCLCV Trigger: AACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTC...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGGCTAGGGTGAAGTTGTaGCGGCGCTTTGCTGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWARVKL*RRFAGS Trigger: GGACCCAGCAAAGCGCCGGCACAACTTCACCCTAGC...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGAGCTCGGGCTTGGCCTaGTCCTTCACATCAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWSSGLA*SFTSAS Trigger: GGAGGCTGATGTGAAGGACCAGGCCAAGCCCGAGCT...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTTGGAGCCAATCCATCTaGGCTGAGGCTGGGCCCCTC | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAWSQSI*AEAGPL Trigger: GAGGGGCCCAGCCTCAGCCCAGATGGATTGGCTCCA...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGTTCGGCCACCTCCTCTaGAATGCCTTGACTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWFGHLL*NALTSW Trigger: CCAGGAAGTCAAGGCATTGCAGAGGAGGTGGCCGAA...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTAGTGGGGCCAGAGGCTaGCCCGCCAAATTTGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGSGARG*PAKFVH Trigger: ATGGACAAATTTGGCGGGGCAGCCTCTGGCCCCACT...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGCAGTTGGGGAGACAGTaGTCCCATCCTCAGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWQLGRQ*SHPQRS Trigger: ACTCCTCTGAGGATGGGACCACTGTCTCCCCAACTG...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGTTGTGCCGGCGCTTTaGTGGGTCCAGCTCTGCATA | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAVVPAL*WVQLCI Trigger: TATGCAGAGCTGGACCCAGCAAAGCGCCGGCACAAC...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTCTTGGAATCGGGCACTaGCAGCCGCACCATGTCATC | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVALGIGH*QPHHVI Trigger: GATGACATGGTGCGGCTGGCAGTGCCCGATTCCAAG...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCAGTGCCGGCGCTTTGCTaGGTCCAGCTCTGCATAGTC | + |
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Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSVPALC*VQLCIV Trigger: GACTATGCAGAGCTGGACCCAGCAAAGCGCCGGCAC...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGATCCTTCTTTTTCTCTaGGGGTTGAGGCTCTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWILLFL*GLRLCG Trigger: CCCACAGAGCCTCAACCCTCAGAGAAAAAGAAGGAT...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTCCAAAAGCATGTTCTTaGCACCACCGATGGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAPKACS*HHRWLP Trigger: GGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGG...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTCCTCTGGCTTCCCCTTaGAAGTCTGTCTTGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGPLASP*KSVLSS Trigger: TGAGCTCAAGACAGACTTGCAAGGGGAAGCCAGAGG...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGCTGGGTCCAGCTCTaGATAGTCAAAGGCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGCWVQL*IVKGFW Trigger: CCAGAAGCCTTTGACTATGCAGAGCTGGACCCAGCA...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTCTCCAGCATCCTCCTTaGGTTCAGGCTTGGCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGLQHPP*VQAWLC Trigger: ACAAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAG...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCAACTCCTCGGGGGAGCTaGGAATCACTGCAGCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSTPRGS*ESLQPF Trigger: AAAGGGCTGCAGTGATTCCCAGCTCCCCCGAGGAGT...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTCTCTCCTGTAGACTCTaGAGCCAATCCATCTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGLSCRL*SQSIWA Trigger: AGCCCAGATGGATTGGCTCCAGAGTCTACAGGAGAG...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTCCTCTGCAATGCCTTaGCTTCCTGGTGTCTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGSSAMP*LPGVSR Trigger: TCTTGAGACACCAGGAAGTCAAGGCATTGCAGAGGA...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTAAGATTCCCTGCAGTTaGGGAGACAGTGGTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAKIPCS*GDSGPI Trigger: GATGGGACCACTGTCTCCCCAACTGCAGGGAATCTT...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCACTTCGTCCTTCCCTCTaGCTTCCCCTTGCAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSLRPSL*LPLASL Trigger: CAGACTTGCAAGGGGAAGCCAGAGGGAAGGACGAAG...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTTGGGCGAAGATTCACTaGCTGAAGGACTGGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAWAKIH*LKDWSL Trigger: GAGAGACCAGTCCTTCAGCCAGTGAATCTTCGCCCA...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGCGACACTCTGCGTTCTaGTGCTCGATCCTTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QVSFYFWPTACNIRVAGWRHSAF*CSILLF Trigger: AAAAAGAAGGATCGAGCACCAGAACGCAGAGTGTCG...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCACCACCTCCTCTGCAATaGCTTGACTTCCTGGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSPPPLQ*LDFLVS Trigger: AGACACCAGGAAGTCAAGGCATTGCAGAGGAGGTGG...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTTTCACCAGCCCTTTCTaGACAAGGCTACGGTATAGC | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAFTSPF*TRLRYS Trigger: GCTATACCGTAGCCTTGTGCAGAAAGGGCTGGTGAA...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CCA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTAATGCCTTGACTTCCTaGTGTCTCAAGATTCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: MQVSFYFWPTACNIRVAGNALTS*CLKIPC Trigger: GCAGGGAATCTTGAGACACCAGGAAGTCAAGGCATT...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTATGTTCTGCCCAATCTaGAGGCCCTTCTTTGTCACT | + |
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Preference number: 4 (lower is better) Translates to: QMQVSFYFWPTACNIRVAMFCPI*RPFFVT Trigger: AGTGACAAAGAAGGGCCTTCAGATTGGGCAGAACAT...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| 3UTR CAA 72 bp | AATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTaGATACTGGTGTCACCTGCTTTATGTCTGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: NERNFEKALSVR*ILVSPALCLVV Trigger: CACCACCAGACATAAAGCAGGTGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR GCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCAGCCACTCTTAGATGCTaGTTTACACAAATGTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSATLRC*FTQMFC Trigger: GCAGAACATTTGTGTAAAGCAGCATCTAAGAGTGGC...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR TCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCACTTGCAAGTCTGTCTTaGGCTCATCTAATATACTTG | + |
|
Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSLASLS*AHLIYL Trigger: CAAGTATATTAGATGAGCTCAAGACAGACTTGCAAG...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR GCA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCATTCGCCACTCTTAGATaGTGCTTTACACAAATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: RNERNFEKALSVRLILVSFATLR*CFTQMF Trigger: GAACATTTGTGTAAAGCAGCATCTAAGAGTGGCGAA...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 90 bp | GGCCCGGCACCACTCCAAAAGCATGTTCTTGACACCACCGATGGCTaGCCCGGCTGCCTTTGTGTTCCGGAACAGTGCAGTGGGGCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: GPAPLQKHVLDTTDG*PGCLCVPEQCSGAR Trigger: TCTGGCCCCACTGCACTGTTCCGGAACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGGAGTGGTGCCGGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 90 bp | CCCGGCTGCCTTTGTGTTCCGGAACAGTGCAGTGGGGCCAGAGGCTaGCCCGCCAAATTTGTCCATGATGGCCTTCCGATTCTGTGCACG | + |
|
Preference number: 5 (lower is better) Translates to: PGCLCVPEQCSGARG*PAKFVHDGLPILCT Trigger: CGTGCACAGAATCGGAAGGCCATCATGGACAAATTTGGCGGGGCAGCCTCTGGCCCCACTGCACTGTTCCGGAACACAAAGGCAGCCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CCA 90 bp | GAATCGGGCACTGCCAGCCGCACCATGTCATCCACCTCCAGCAGCTaGGCACAGTCGGCTAGTTTCTCTGCAGTCGAGAAAGCTAGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: ESGTASRTMSSTSSS*AQSASFSAVEKARV Trigger: CACCCTAGCTTTCTCGACTGCAGAGAAACTAGCCGACTGTGCCCAGCTGCTGGAGGTGGATGACATGGTGCGGCTGGCAGTGCCCGATTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGAGTTGTGCCGGCGCTTaGCTGGGTCCAGCTCTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: PVTYVWLVGVRGAARNERSCAGA*LGPALH Trigger: ATGCAGAGCTGGACCCAGCAAAGCGCCGGCACAACT...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGTCTGGAAGCTCGGGCTaGGCCTGGTCCTTCACATCA | + |
|
Preference number: 5 (lower is better) Translates to: PVTYVWLVGVRGAARNERSGSSG*AWSFTS Trigger: TGATGTGAAGGACCAGGCCAAGCCCGAGCTTCCAGA...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS TCA 90 bp | CGTAGTTTCTCGTCATGGCCCGGCACCACTCCAAAAGCATGTTCTTaGCACCACCGATGGCTGCCCCGGCTGCCTTTGTGTTCCGGAACA | + |
|
Preference number: 5 (lower is better) Translates to: RSFSSWPGTTPKACS*HHRWLPRLPLCSGT Trigger: TGTTCCGGAACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGGAGTGGTGCCGGGCCATGACGAGAAACTACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 90 bp | CCCAACTGTGCCTTCGGCCACCTCCTCTGCAATGCCTTGACTTCCTaGTGTCTCAAGATTCCCTGCAGTTGGGGAGACAGTGGTCCCATC | + |
|
Preference number: 5 (lower is better) Translates to: PNCAFGHLLCNALTS*CLKIPCSWGDSGPI Trigger: GATGGGACCACTGTCTCCCCAACTGCAGGGAATCTTGAGACACCAGGAAGTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGCAAGATTCCCTGCAGTaGGGGAGACAGTGGTCCCAT | + |
|
Preference number: 5 (lower is better) Translates to: PVTYVWLVGVRGAARNERQDSLQ*GRQWSH Trigger: ATGGGACCACTGTCTCCCCAACTGCAGGGAATCTTG...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGGCTCATCTAATATACTaGCTTCCCCTGGGGACCCCC | + |
|
Preference number: 5 (lower is better) Translates to: PVTYVWLVGVRGAARNERAHLIY*LPLGTP Trigger: GGGGGTCCCCAGGGGAAGCAAGTATATTAGATGAGC...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS TCA 90 bp | GCTGGGCACAGTCGGCTAGTTTCTCTGCAGTCGAGAAAGCTAGGGTaGAGTTGTGCCGGCGCTTTGCTGGGTCCAGCTCTGCATAGTCAA | + |
|
Preference number: 5 (lower is better) Translates to: AGHSRLVSLQSRKLG*SCAGALLGPALHSQ Trigger: TTGACTATGCAGAGCTGGACCCAGCAAAGCGCCGGCACAACTTCACCCTAGCTTTCTCGACTGCAGAGAAACTAGCCGACTGTGCCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGTTCCTTACCCTGCTCTaGCTCTTCAGTGGGACTCTC | + |
|
Preference number: 5 (lower is better) Translates to: PVTYVWLVGVRGAARNERFLTLL*LFSGTL Trigger: GAGAGTCCCACTGAAGAGCAAGAGCAGGGTAAGGAA...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS TCA 90 bp | GGGCCACTCCTCGGGGGAGCTGGGAATCACTGCAGCCCTTTCTTCTaGTTCATTTTCCTTACCCTGCTCTTGCTCTTCAGTGGGACTCTC | + |
|
Preference number: 5 (lower is better) Translates to: GPLLGGAGNHCSPFF*FIFLTLLLLFSGTL Trigger: GAGAGTCCCACTGAAGAGCAAGAGCAGGGTAAGGAAAATGAATCAGAAGAAAGGGCTGCAGTGATTCCCAGCTCCCCCGAGGAGTGGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 90 bp | TGTCACTTCCGGTCTCTTTCCCATCAACTTCTGGAAGCTCGGGCTTaGCCTGGTCCTTCACATCAGCCTCCTCCTGAGACTCAGTCTCAG | + |
|
Preference number: 5 (lower is better) Translates to: CHFRSLSHQLLEARA*PGPSHQPPPETQSQ Trigger: CTGAGACTGAGTCTCAGGAGGAGGCTGATGTGAAGGACCAGGCCAAGCCCGAGCTTCCAGAAGTTGATGGGAAAGAGACCGGAAGTGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 90 bp | GTTCTGGTGCTCGATCCTTCTTTTTCTCTGAGGGTTGAGGCTCTGTaGGACTCCCTGGCACCTCACTGGGCGAAGATTCACTGGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VLVLDPSFSLRVEAL*DSLAPHWAKIHWLK Trigger: CTTCAGCCAGTGAATCTTCGCCCAGTGAGGTGCCAGGGAGTCCCACAGAGCCTCAACCCTCAGAGAAAAAGAAGGATCGAGCACCAGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 90 bp | GTTCTGCCCAATCTGAAGGCCCTTCTTTGTCACTTGTCCCAACTGTaGCTTCGGCCACCTCCTCTGCAATGCCTTGACTTCCTGGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: VLPNLKALLCHLSQL*LRPPPLQCLDFLVS Trigger: AGACACCAGGAAGTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATTGGGCAGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 90 bp | AGCCTCCTCCTGAGACTCAGTCTCAGCCTCGTTGACAGTAACCTCTaGTCCAGCATCCTCCTTGGGTTCAGGCTTGGCTTTGTCATTCAC | + |
|
Preference number: 5 (lower is better) Translates to: SLLLRLSLSLVDSNL*SSILLGFRLGFVIH Trigger: GTGAATGACAAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAGCAGAGGTTACTGTCAACGAGGCTGAGACTGAGTCTCAGGAGGAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | CCTGTAACATACGTGTGGCTGGTTGGGGTGCGGGGAGCAGCAAGGAATGAGAGGGGTTCAGGCTTGGCTTaGTCATTCACATCCGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: PVTYVWLVGVRGAARNERGSGLA*SFTSDF Trigger: GAAATCGGATGTGAATGACAAAGCCAAGCCTGAACC...CCTCTCATTCCTTGCTGCTCCCCGCACCCCAACCAGCCACACGTATGTTACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGGCTCCAGCATCCTCCTaGGGTTCAGGCTTGGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: QVSFYFWPTACNIRVAGWAPASS*GSGLAL Trigger: CAAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAGC...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | AGGAATGAGAGGAATTTTGAAAAAGCACTTTCGGTGCGGTTGATACTGGTGTCACTGCCCCGGCTGCCTTaGTGTTCCGGAACAGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RNERNFEKALSVRLILVSLPRLP*CSGTVQ Trigger: CTGCACTGTTCCGGAACACAAAGGCAGCCGGGGCAG...TGACACCAGTATCAACCGCACCGAAAGTGCTTTTTCAAAATTCCTCTCATTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS-3UTR CAA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTAAAGCTAGGGTGAAGTaGTGCCGGCGCTTTGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: MQVSFYFWPTACNIRVAGKARVK*CRRFAG Trigger: CCCAGCAAAGCGCCGGCACAACTTCACCCTAGCTTT...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 90 bp | CTGGGAATCACTGCAGCCCTTTCTTCTGATTCATTTTCCTTACCCTaGTCTTGCTCTTCAGTGGGACTCTCTGGCTCCACCAACTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LGITAALSSDSFSLP*SCSSVGLSGSTNSF Trigger: AAAGGAGTTGGTGGAGCCAGAGAGTCCCACTGAAGAGCAAGAGCAGGGTAAGGAAAATGAATCAGAAGAAAGGGCTGCAGTGATTCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CCA 90 bp | CCCTTTCTTCTGATTCATTTTCCTTACCCTGCTCTTGCTCTTCAGTaGGACTCTCTGGCTCCACCAACTCCTTTGTGTCACTTCCGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: PFLLIHFPYPALALQ*DSLAPPTPLCHFRS Trigger: AGACCGGAAGTGACACAAAGGAGTTGGTGGAGCCAGAGAGTCCCACTGAAGAGCAAGAGCAGGGTAAGGAAAATGAATCAGAAGAAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGGCTCCACCAACTCCTTaGTGTCACTTCCGGTCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QVSFYFWPTACNIRVAGWAPPTP*CHFRSL Trigger: AAGAGACCGGAAGTGACACAAAGGAGTTGGTGGAGC...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTCTCCTCTGCAATGCCTaGACTTCCTGGTGTCTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: MQVSFYFWPTACNIRVAGLLCNA*TSWCLK Trigger: CTTGAGACACCAGGAAGTCAAGGCATTGCAGAGGAG...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTCCAAAAGCATGTTCTaGACACCACCGATGGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: MQVSFYFWPTACNIRVAGSKSMF*TPPMAA Trigger: GGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGGA...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | ATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTCTGAAGGCCCTTCTTaGTCACTTGTCCCAACTGTG | + |
|
Preference number: 5 (lower is better) Translates to: MQVSFYFWPTACNIRVAGSEGPS*SLVPTV Trigger: CACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGA...ACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | CAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTGGTTGGCCTTGCAAGTCTGTCTaGAGCTCATCTAATATACTT | + |
|
Preference number: 5 (lower is better) Translates to: QVSFYFWPTACNIRVAGWPCKSV*SSSNIL Trigger: AAGTATATTAGATGAGCTCAAGACAGACTTGCAAGG...CCAACCAGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS-3UTR CAA 90 bp | CAAATGCAGGTTTCTTTTTATTTTTGGCCCACCGCCTGTAACATACGTGTGGCTTCCTTAGATTCTAGATaGGTCTCTTTCTCATCAACC | + |
|
Preference number: 5 (lower is better) Translates to: QMQVSFYFWPTACNIRVASLDSR*VSFSST Trigger: GGTTGATGAGAAAGAGACCAATCTAGAATCTAAGGA...AGCCACACGTATGTTACAGGCGGTGGGCCAAAAATAAAAAGAAACCTGCATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 72 bp | CTCGTCATGGCCCGGCACCACTCCAAAAGCATGTTCTaGACACCACCGATGGCTGCCCCGGCTGCCTTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: LVMARHHSKSMF*TPPMAAPAAFV Trigger: CACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGGAGTGGTGCCGGGCCATGACGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS TCA 72 bp | TCGTCATGGCCCGGCACCACTCCAAAAGCATGTTCTTaGCACCACCGATGGCTGCCCCGGCTGCCTTTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: SSWPGTTPKACS*HHRWLPRLPLC Trigger: ACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGGAGTGGTGCCGGGCCATGACGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 72 bp | AAGCATGTTCTTGACACCACCGATGGCTGCCCCGGCTaGCTTTGTGTTCCGGAACAGTGCAGTGGGGCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: KHVLDTTDGCPG*LCVPEQCSGAR Trigger: TCTGGCCCCACTGCACTGTTCCGGAACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CCA 72 bp | AGGGTTGAGGCTCTGTGGGACTCCCTGGCACCTCACTaGGCGAAGATTCACTGGCTGAAGGACTGGTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: RVEALWDSLAPH*AKIHWLKDWSL Trigger: GAGAGACCAGTCCTTCAGCCAGTGAATCTTCGCCCAGTGAGGTGCCAGGGAGTCCCACAGAGCCTCAACCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CCA 72 bp | TCTTCCTTCCCAACCTTCTCCTCAGCAAGGTCACCCTaGGCTTCGTCCTTCCCTCTGGCTTCCCCTTGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: SSFPTFSSARSP*ASSFPLASPCK Trigger: CTTGCAAGGGGAAGCCAGAGGGAAGGACGAAGCCCAGGGTGACCTTGCTGAGGAGAAGGTTGGGAAGGAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS TCA 72 bp | CACTCTGCGTTCTGGTGCTCGATCCTTCTTTTTCTCTaGGGGTTGAGGCTCTGTGGGACTCCCTGGCACCTC | + |
|
Preference number: 6 (lower is better) Translates to: HSAFWCSILLFL*GLRLCGTPWHL Trigger: GAGGTGCCAGGGAGTCCCACAGAGCCTCAACCCTCAGAGAAAAAGAAGGATCGAGCACCAGAACGCAGAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS TCA 72 bp | AGTCGGCTAGTTTCTCTGCAGTCGAGAAAGCTAGGGTaGAGTTGTGCCGGCGCTTTGCTGGGTCCAGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: SRLVSLQSRKLG*SCAGALLGPAL Trigger: CAGAGCTGGACCCAGCAAAGCGCCGGCACAACTTCACCCTAGCTTTCTCGACTGCAGAGAAACTAGCCGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 72 bp | CTTTGTGTTCCGGAACAGTGCAGTGGGGCCAGAGGCTaGCCCGCCAAATTTGTCCATGATGGCCTTCCGATT | + |
|
Preference number: 6 (lower is better) Translates to: LCVPEQCSGARG*PAKFVHDGLPI Trigger: AATCGGAAGGCCATCATGGACAAATTTGGCGGGGCAGCCTCTGGCCCCACTGCACTGTTCCGGAACACAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 72 bp | CCACTCCAAAAGCATGTTCTTGACACCACCGATGGCTaGCCCGGCTGCCTTTGTGTTCCGGAACAGTGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: PLQKHVLDTTDG*PGCLCVPEQCS Trigger: ACTGCACTGTTCCGGAACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTGGAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 72 bp | CGGTCTCTTTCCCATCAACTTCTGGAAGCTCGGGCTTaGCCTGGTCCTTCACATCAGCCTCCTCCTGAGACT | + |
|
Preference number: 6 (lower is better) Translates to: RSLSHQLLEARA*PGPSHQPPPET Trigger: AGTCTCAGGAGGAGGCTGATGTGAAGGACCAGGCCAAGCCCGAGCTTCCAGAAGTTGATGGGAAAGAGACCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CAA 72 bp | CCCAACTGTGCCTTCGGCCACCTCCTCTGCAATGCCTaGACTTCCTGGTGTCTCAAGATTCCCTGCAGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: PNCAFGHLLCNA*TSWCLKIPCSW Trigger: CCAACTGCAGGGAATCTTGAGACACCAGGAAGTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CAA 90 bp | GTCACTTGTCCCAACTGTGCCTTCGGCCACCTCCTCTGCAATGCCTaGACTTCCTGGTGTCTCAAGATTCCCTGCAGTTGGGGAGACAGT | + |
|
Preference number: 6 (lower is better) Translates to: VTCPNCAFGHLLCNA*TSWCLKIPCSWGDS Trigger: ACTGTCTCCCCAACTGCAGGGAATCTTGAGACACCAGGAAGTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 72 bp | CTCGATCCTTCTTTTTCTCTGAGGGTTGAGGCTCTGTaGGACTCCCTGGCACCTCACTGGGCGAAGATTCAC | + |
|
Preference number: 6 (lower is better) Translates to: LDPSFSLRVEAL*DSLAPHWAKIH Trigger: GTGAATCTTCGCCCAGTGAGGTGCCAGGGAGTCCCACAGAGCCTCAACCCTCAGAGAAAAAGAAGGATCGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CAA 90 bp | CCTGCTCTTGCTCTTCAGTGGGACTCTCTGGCTCCACCAACTCCTTaGTGTCACTTCCGGTCTCTTTCCCATCAACTTCTGGAAGCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: PALALQWDSLAPPTP*CHFRSLSHQLLEAR Trigger: CCGAGCTTCCAGAAGTTGATGGGAAAGAGACCGGAAGTGACACAAAGGAGTTGGTGGAGCCAGAGAGTCCCACTGAAGAGCAAGAGCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 72 bp | CTGAGACTCAGTCTCAGCCTCGTTGACAGTAACCTCTaGTCCAGCATCCTCCTTGGGTTCAGGCTTGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: LRLSLSLVDSNL*SSILLGFRLGF Trigger: AAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAGCAGAGGTTACTGTCAACGAGGCTGAGACTGAGTCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 72 bp | CTTTGTGTCACTTCCGGTCTCTTTCCCATCAACTTCTaGAAGCTCGGGCTTGGCCTGGTCCTTCACATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LCVTSGLFPINF*KLGLGLVLHIS Trigger: GCTGATGTGAAGGACCAGGCCAAGCCCGAGCTTCCAGAAGTTGATGGGAAAGAGACCGGAAGTGACACAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CCA 72 bp | TTCCTTACCCTGCTCTTGCTCTTCAGTGGGACTCTCTaGCTCCACCAACTCCTTTGTGTCACTTCCGGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: FLTLLLLFSGTL*LHQLLCVTSGL Trigger: GAGACCGGAAGTGACACAAAGGAGTTGGTGGAGCCAGAGAGTCCCACTGAAGAGCAAGAGCAGGGTAAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS GCA 72 bp | AATCTGAAGGCCCTTCTTTGTCACTTGTCCCAACTGTaGCTTCGGCCACCTCCTCTGCAATGCCTTGACTTC | + |
|
Preference number: 6 (lower is better) Translates to: NLKALLCHLSQL*LRPPPLQCLDF Trigger: GAAGTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
||
| CDS CAA 72 bp | AATGTTCTGCCCAATCTGAAGGCCCTTCTTTGTCACTaGTCCCAACTGTGCCTTCGGCCACCTCCTCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: NVLPNLKALLCH*SQLCLRPPPLQ Trigger: TTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATTGGGCAGAACATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 72 bp | GCCTCGTTGACAGTAACCTCTGCTCCAGCATCCTCCTaGGGTTCAGGCTTGGCTTTGTCATTCACATCCGAT | + |
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Preference number: 6 (lower is better) Translates to: ASLTVTSAPASS*GSGLALSFTSD Trigger: ATCGGATGTGAATGACAAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAGCAGAGGTTACTGTCAACGAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 72 bp | GCTCTTCAGTGGGACTCTCTGGCTCCACCAACTCCTTaGTGTCACTTCCGGTCTCTTTCCCATCAACTTCTG | + |
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Preference number: 6 (lower is better) Translates to: ALQWDSLAPPTP*CHFRSLSHQLL Trigger: CAGAAGTTGATGGGAAAGAGACCGGAAGTGACACAAAGGAGTTGGTGGAGCCAGAGAGTCCCACTGAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 90 bp | CTTTACACAAATGTTCTGCCCAATCTGAAGGCCCTTCTTTGTCACTaGTCCCAACTGTGCCTTCGGCCACCTCCTCTGCAATGCCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: LYTNVLPNLKALLCH*SQLCLRPPPLQCLD Trigger: GTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATTGGGCAGAACATTTGTGTAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 90 bp | GATGCTGCTTTACACAAATGTTCTGCCCAATCTGAAGGCCCTTCTTaGTCACTTGTCCCAACTGTGCCTTCGGCCACCTCCTCTGCAATG | + |
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Preference number: 6 (lower is better) Translates to: DAALHKCSAQSEGPS*SLVPTVPSATSSAM Trigger: CATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATTGGGCAGAACATTTGTGTAAAGCAGCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS TCA 72 bp | CTCGGGGGAGCTGGGAATCACTGCAGCCCTTTCTTCTaGTTCATTTTCCTTACCCTGCTCTTGCTCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LGGAGNHCSPFF*FIFLTLLLLFS Trigger: ACTGAAGAGCAAGAGCAGGGTAAGGAAAATGAATCAGAAGAAAGGGCTGCAGTGATTCCCAGCTCCCCCGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CCA 72 bp | CTTCTTTCTTACCAGTGTCTTCCTGAGAAGCCGCTGTaGTGTCTTCCTTCCCAACCTTCTCCTCAGCAAGGT | + |
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Preference number: 6 (lower is better) Translates to: LLSYQCLPEKPL*CLPSQPSPQQG Trigger: ACCTTGCTGAGGAGAAGGTTGGGAAGGAAGACACCACAGCGGCTTCTCAGGAAGACACTGGTAAGAAAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 72 bp | TTACACAAATGTTCTGCCCAATCTGAAGGCCCTTCTTaGTCACTTGTCCCAACTGTGCCTTCGGCCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: LHKCSAQSEGPS*SLVPTVPSATS Trigger: GGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATTGGGCAGAACATTTGTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 90 bp | ACAGTAACCTCTGCTCCAGCATCCTCCTTGGGTTCAGGCTTGGCTTaGTCATTCACATCCGATTTCTCCTTAGATTCTAGATTGGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: TVTSAPASSLGSGLA*SFTSDFSLDSRLVS Trigger: AGAGACCAATCTAGAATCTAAGGAGAAATCGGATGTGAATGACAAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAGCAGAGGTTACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS TCA 72 bp | CTTAGATGCTGCTTTACACAAATGTTCTGCCCAATCTaGAGGCCCTTCTTTGTCACTTGTCCCAACTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: LRCCFTQMFCPI*RPFFVTCPNCA Trigger: GGCACAGTTGGGACAAGTGACAAAGAAGGGCCTTCAGATTGGGCAGAACATTTGTGTAAAGCAGCATCTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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| CDS CAA 72 bp | TCTGCTCCAGCATCCTCCTTGGGTTCAGGCTTGGCTTaGTCATTCACATCCGATTTCTCCTTAGATTCTAGA | + |
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Preference number: 6 (lower is better) Translates to: SAPASSLGSGLA*SFTSDFSLDSR Trigger: TCTAGAATCTAAGGAGAAATCGGATGTGAATGACAAAGCCAAGCCTGAACCCAAGGAGGATGCTGGAGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028471.6 |
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