RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMTN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020439

Ensembl transcript IDs: ENSMUST00000020718.10, ENSMUST00000020721.15, ENSMUST00000075118.10, ENSMUST00000110011.8, ENSMUST00000136243.2, ENSMUST00000156201.8, ENSMUST00000170588.8

Found 515 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTaGCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTACAGCG +
Preference number: 1 (lower is better)
Translates to: AARSAGGVSRVARHS*RANAAHGAAGGCTA
Trigger: CGCTGTACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
3UTR-3UTR CCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACGCAAACGCAGCTCATaGCGCCGCAGGTGGTTGTAC +
Preference number: 2 (lower is better)
Translates to: GGVGTAARSAGGVSRVARRKRSS*RRRWLY
Trigger: GTACAACCACCTGCGGCGCCATGAGCTGCGTTTGCG...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
3UTR-3UTR CCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGATCATGGCGCCGCAGGTaGTTGTACAGCGATTGCACA +
Preference number: 2 (lower is better)
Translates to: GGVGTAARSAGGVSRVARSWRRR*LYSDCT
Trigger: TGTGCAATCGCTGTACAACCACCTGCGGCGCCATGA...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
3UTR CCA 72 bp GCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTaGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGG +
Preference number: 3 (lower is better)
Translates to: AAVGRRTGRCRC*GRGDSSPQRRR
Trigger: CCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
3UTR TCA 72 bp GGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTaGGCAGAGTGGCTAGACATTCTTGCCGCGCAAACG +
Preference number: 3 (lower is better)
Translates to: GAWGQQPAAQAV*AEWLDILAAQT
Trigger: CGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
3UTR GCA 72 bp AGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTaGCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGT +
Preference number: 3 (lower is better)
Translates to: SAGGVSRVARHS*RANAAHGAAGG
Trigger: ACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
3UTR-3UTR CAA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCATTGGGGTCGGGCTTTTaGCCCATGATCATCATGTCC +
Preference number: 3 (lower is better)
Translates to: AARSAGGVSRVARHSCRALGSGF*PMIIMS
Trigger: GGACATGATGATCATGGGCAAAAAGCCCGACCCCAA...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCCCCTGGCTCCCCAGTaGCAACGGCCACGGGCGGTG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSPLAPQ*QRPRAV
Trigger: CACCGCCCGTGGCCGTTGGCACTGGGGAGCCAGGGG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCAGCTCCCGGATGGCTaGGCGGATCCGCCGCCGTTC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCQLPDG*ADPPPF
Trigger: GAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCAGCTCCCGGATGGCTaGGCGGATCCGCCGCCGTTC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSQLPDG*ADPPPF
Trigger: GAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGCCGCCCGCTGGCTGTaGCTGGTGGTGGTCTCCGTG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSAARWL*LVVVSV
Trigger: CACGGAGACCACCACCAGGCACAGCCAGCGGGCGGC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGCTGCAGCTCCCGGATaGCTGAGCGGATCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCAAAPG*LSGSAA
Trigger: GGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGGGAAGCAGGTGAGCTaGGCCTGCCCCCAGGCGGGG +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEGKQVS*ACPQAG
Trigger: CCCCGCCTGGGGGCAGGCCCAGCTCACCTGCTTCCC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGGCCGTCAGCTCCTCTaGACTCAGGGGACTCCGCCC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCGRQLL*TQGTPP
Trigger: GGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGTGCTGCCTGCCTCCTaGTGTCCTCTCGGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSVLPAS*CPLGGH
Trigger: GTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCAC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGTGCTGCCTGCCTCCTaGTGTCCTCTCGGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCVLPAS*CPLGGH
Trigger: GTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCAC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGCCGCCCGCTGGCTGTaGCTGGTGGTGGTCTCCGTG +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEAARWL*LVVVSV
Trigger: CACGGAGACCACCACCAGGCACAGCCAGCGGGCGGC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGCTGCAGCTCCCGGATaGCTGAGCGGATCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRAAAPG*LSGSAA
Trigger: GGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGGGAAGCAGGTGAGCTaGGCCTGCCCCCAGGCGGGG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVGKQVS*ACPQAG
Trigger: CCCCGCCTGGGGGCAGGCCCAGCTCACCTGCTTCCC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCGGGGTGGGCCATCCTaGAGCCTGGCAACCACGGGA +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCRGGPS*SLATTG
Trigger: TCCCGTGGTTGCCAGGCTCCAGGATGGCCCACCCCG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGGCCGTCAGCTCCTCTaGACTCAGGGGACTCCGCCC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRGRQLL*TQGTPP
Trigger: GGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGTGCTGCCTGCCTCCTaGTGTCCTCTCGGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEVLPAS*CPLGGH
Trigger: GTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCAC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCGTAGCCGCGGGTCTTaGCTCGGCACCAGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCRSRGS*LGTSPA
Trigger: TGCTGGACTGGTGCCGAGCCAAGACCCGCGGCTACG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGAGGGAAGCAGGTGAGCTaGGCCTGCCCCCAGGCGGGG +
Preference number: 4 (lower is better)
Translates to: GGVGTAARSAGGVSRVARGKQVS*ACPQAG
Trigger: CCCCGCCTGGGGGCAGGCCCAGCTCACCTGCTTCCC...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGCAGCACCCGGCCTGTaGAGGCCTGACCACGGCCAT +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEAAPGL*RPDHGH
Trigger: ATGGCCGTGGTCAGGCCTCCACAGGCCGGGTGCTGC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGCAGCACCCGGCCTGTaGAGGCCTGACCACGGCCAT +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRAAPGL*RPDHGH
Trigger: ATGGCCGTGGTCAGGCCTCCACAGGCCGGGTGCTGC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGGAGTCCAAGGTATCTaGGGGCTCTGTGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCGVQGI*GLCGAR
Trigger: CCTGGCCCCACAGAGCCCTCAGATACCTTGGACTCC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTGTTTTCAAGGGACCTaGGAGCCAAGCCCCGCCCCC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCCFQGT*EPSPAP
Trigger: GGGGGCGGGGCTTGGCTCTCAGGTCCCTTGAAAACA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCAGCTGTACGGGGTGTaGCAGGACCACCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSQLYGV*QDHLQS
Trigger: GCTCTGCAGGTGGTCCTGGCACACCCCGTACAGCTG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCAGCTGTACGGGGTGTaGCAGGACCACCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCQLYGV*QDHLQS
Trigger: GCTCTGCAGGTGGTCCTGGCACACCCCGTACAGCTG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTATCTGAGGGCTCTGTaGGGCCAGGCAGGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSYLRAL*GQAGAC
Trigger: GCAAGCCCCTGCCTGGCCCCACAGAGCCCTCAGATA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTATCTGAGGGCTCTGTaGGGCCAGGCAGGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCYLRAL*GQAGAC
Trigger: GCAAGCCCCTGCCTGGCCCCACAGAGCCCTCAGATA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCTTCATACTGCCCCCTaGCTCCCCAGTGCCAACGGC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSLHTAP*LPSANG
Trigger: GCCGTTGGCACTGGGGAGCCAGGGGGCAGTATGAAG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGCTGGCTGTGCCTGGTaGTGGTCTCCGTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSAGCAW*WSPWPH
Trigger: ATGTGGCCACGGAGACCACCACCAGGCACAGCCAGC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTGGACTCCACTGTGGTaGTGCGGGCCGTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSWTPLW*CGPSEC
Trigger: GCACTCAGACGGCCCGCACCACCACAGTGGAGTCCA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCAGGCTGCCAGGACGTaGGCTGGTCTGGTCCTCTCG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVQAART*AGLVLS
Trigger: CGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGGAGTCCAAGGTATCTaGGGGCTCTGTGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRGVQGI*GLCGAR
Trigger: CCTGGCCCCACAGAGCCCTCAGATACCTTGGACTCC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTACAGTGGCCAGAGCTaGATCGGCTGCCTGGGTCAC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCYSGQS*IGCLGH
Trigger: GTGACCCAGGCAGCCGATGCAGCTCTGGCCACTGTA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTCTGTATCCAGGAGCTaGGGGCAGTCCGCATGGGTC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCSVSRS*GQSAWV
Trigger: GACCCATGCGGACTGCCCGCAGCTCCTGGATACAGA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTACTCCACTGTGGTGGTaGGGGCCGTCTGAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCTPLWW*GPSECH
Trigger: ATGGCACTCAGACGGCCCGCACCACCACAGTGGAGT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCCACTGGCTCTACAGTaGCCAGAGCTGCATCGGCTG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSPLALQ*PELHRL
Trigger: CAGCCGATGCAGCTCTGGCCACTGTAGAGCCAGTGG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTTTGGACCGTGGTGGTaGTGGTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCFGPWW*WCCCCC
Trigger: GCAGCAGCAGCAGCACCACCACCACCACGGTCCAAA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGCTGCAGCTCCCGGATaGCTGAGCGGATCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGAAAPG*LSGSAA
Trigger: GGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGC...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGAAGCAGGTGAGCTaGGCCTGCCCCCAGGCGGGG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWGKQVS*ACPQAG
Trigger: CCCCGCCTGGGGGCAGGCCCAGCTCACCTGCTTCCC...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATCCACAGCAGGACACTaGGCTCCAGCAGGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRSTAGH*APAGSS
Trigger: GCTGGAGCCTGCTGGAGCCCAGTGTCCTGCTGTGGA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATATCTGAGGGCTCTGTaGGGCCAGGCAGGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRYLRAL*GQAGAC
Trigger: GCAAGCCCCTGCCTGGCCCCACAGAGCCCTCAGATA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCGGGCGGTGGGGTACTaGGCTCTTCTGAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVRAVGY*ALLSRA
Trigger: AGCCCTGCTCAGAAGAGCCCAGTACCCCACCGCCCG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACAGGCTGCCAGGACGTaGGCTGGTCTGGTCCTCTCG +
Preference number: 4 (lower is better)
Translates to: GGVGTAARSAGGVSRVARQAART*AGLVLS
Trigger: CGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTG...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGCGTGCTTGGGATGCTaGAGTCTTGGGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSACLGC*SLGQTL
Trigger: CAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGGCGGATGGCAGCTCTaGTCAGCTTGCGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEGGWQL*SACAPH
Trigger: ATGAGGAGCGCAAGCTGATCAGAGCTGCCATCCGCC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGAAGTGGCTCAGAGCTaGCTGGAGCCTCCACAGCAG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSREVAQS*LEPPQQ
Trigger: CTGCTGTGGAGGCTCCAGTCAGCTCTGAGCCACTTC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGCGATTGCACATAGGTaGAGACGCACTTGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSAIAHR*RRTWGR
Trigger: CCGACCCCAAGTGCGTCTTCACCTATGTGCAATCGC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRSELTQ*SPDELP
Trigger: AGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCAGCTGTACGGGGTGTaGCAGGACCACCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVQLYGV*QDHLQS
Trigger: GCTCTGCAGGTGGTCCTGGCACACCCCGTACAGCTG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATCTGTATCCAGGAGCTaGGGGCAGTCCGCATGGGTC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRSVSRS*GQSAWV
Trigger: GACCCATGCGGACTGCCCGCAGCTCCTGGATACAGA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGTCCAATGTGTGTGCTaGCTGCCTCCTGCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSVQCVC*LPPAVL
Trigger: GAGGACAGCAGGAGGCAGGCAGCACACACATTGGAC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCCCCTGGCTCCCCAGTaGCAACGGCCACGGGCGGTG +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPPLAPQ*QRPRAV
Trigger: CACCGCCCGTGGCCGTTGGCACTGGGGAGCCAGGGG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGGTGCTGCTGCTGCTaGTGCCATTCTCCAAGCGCC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRWCCCC*CHSPSA
Trigger: GGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCACCA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTGGTGGTGCTGCTGCTaGTGCTGCCATTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSWWCCC*CCHSPS
Trigger: GCTTGGAGAATGGCAGCAGCAGCAGCAGCACCACCA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTGGTGGTGGTGCTGCTaGTGCTGCTGCCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSWWWCC*CCCHSP
Trigger: TGGAGAATGGCAGCAGCAGCAGCAGCACCACCACCA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCCAGCAACAGCTCGCTaGGCTCTAGCTCAGACTCCA +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSPATAR*ALAQTP
Trigger: TGGAGTCTGAGCTAGAGCCCAGCGAGCTGTTGCTGG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCTCCTTCGTCCTCAATaGCCGTCAGCTCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCLLRPQ*PSAPLH
Trigger: GTGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATTTGGACCGTGGTGGTaGTGGTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRFGPWW*WCCCCC
Trigger: GCAGCAGCAGCAGCACCACCACCACCACGGTCCAAA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSSWFGP*WWWCCC
Trigger: GCAGCAGCACCACCACCACCACGGTCCAAACCAAGA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCSWFGP*WWWCCC
Trigger: GCAGCAGCACCACCACCACCACGGTCCAAACCAAGA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCTGCTGCTCTGGCTCTaGCACCTTACCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCLLLWL*HLTRVQ
Trigger: TTGGACCCTGGTAAGGTGCCAGAGCCAGAGCAGCAG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCTGCTGCTCTGGCTCTaGCACCTTACCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSLLLWL*HLTRVQ
Trigger: TTGGACCCTGGTAAGGTGCCAGAGCCAGAGCAGCAG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGGTGTCCTCTGGGGTTaGGGTTGGCTCGAGTACTTC +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSGVLWG*GWLEYF
Trigger: GAAGTACTCGAGCCAACCCCAACCCCAGAGGACACC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGGTGTCCTCTGGGGTTaGGGTTGGCTCGAGTACTTC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCGVLWG*GWLEYF
Trigger: GAAGTACTCGAGCCAACCCCAACCCCAGAGGACACC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGGTCACATCCTGGCTaGTGTCCTCTGGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRWSHPG*CPLGLG
Trigger: CCCCAACCCCAGAGGACACCAGCCAGGATGTGACCA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGGCCATCCTGGAGCCTaGCAACCACGGGAGAATCAG +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEGHPGA*QPRENQ
Trigger: CTGATTCTCCCGTGGTTGCCAGGCTCCAGGATGGCC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGCGGGGTGGGCCATCCTaGAGCCTGGCAACCACGGGA +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGRGGPS*SLATTG
Trigger: TCCCGTGGTTGCCAGGCTCCAGGATGGCCCACCCCG...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTGGCTGTGCCTGGTaGTGGTCTCCGTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVAGCAW*WSPWPH
Trigger: ATGTGGCCACGGAGACCACCACCAGGCACAGCCAGC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGCAGTGCAGCCCGGATaGGCTTCCTCTCCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRAVQPG*ASSPQS
Trigger: ACTTTGAGGAGAGGAAGCTCATCCGGGCTGCACTGC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGCGTGCTTGGGATGCTaGAGTCTTGGGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRACLGC*SLGQTL
Trigger: CAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCAGCTCCCGGATGGCTaGGCGGATCCGCCGCCGTTC +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLQLPDG*ADPPPF
Trigger: GAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCACAGCTCCCGGATGGCTaGGCGGATCCGCCGCCGTTC +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRAQLPDG*ADPPPF
Trigger: GAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTG...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGGCGGATGGCAGCTCTaGTCAGCTTGCGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVGGWQL*SACAPH
Trigger: ATGAGGAGCGCAAGCTGATCAGAGCTGCCATCCGCC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGCGGCCTGTGGAGGCCTaGCCACGGCCATCCTTGATC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGRPVEA*PRPSLI
Trigger: GATCAAGGATGGCCGTGGTCAGGCCTCCACAGGCCG...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCCCCACTGCTGGTGCTaGGAAGGGTTGGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCPHCWC*EGLGVP
Trigger: GGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCCCCACTGCTGGTGCTaGGAAGGGTTGGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWPHCWC*EGLGVP
Trigger: GGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGACTGAAGGTAGTGACGTaGGTGACACTGCCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRLKVVT*VTLPSR
Trigger: CCGACTGGGCAGTGTCACTCACGTCACTACCTTCAG...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTCTCCAAGCGCCTCATaGAACTGGACTCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSSPSAS*NWTPLW
Trigger: CCACAGTGGAGTCCAGTTTCATGAGGCGCTTGGAGA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAAATGTGTGTGCTGCCTaGCTCCTGCTGTCCTCTCGG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRNVCAA*LLLSSR
Trigger: CCGAGAGGACAGCAGGAGGCAGGCAGCACACACATT...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAAGGGTCCAATGTGTGTaGTGCCTGCCTCCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRRVQCV*CLPPAV
Trigger: GACAGCAGGAGGCAGGCAGCACACACATTGGACCCT...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGTCTGCTGTTCCTGCTaGTCTGGCTCTGGCACCTTA +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSVCCSC*SGSGTL
Trigger: TAAGGTGCCAGAGCCAGAGCAGCAGGAACAGCAGAC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGGTGGTGCTGCTGCTaGTGCTGCCATTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRWWCCC*CCHSPS
Trigger: GCTTGGAGAATGGCAGCAGCAGCAGCAGCACCACCA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGTGGTGGTGCTGCTGCTaGTGCTGCCATTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEWWCCC*CCHSPS
Trigger: GCTTGGAGAATGGCAGCAGCAGCAGCAGCACCACCA...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGGTGGTGGTGCTGCTaGTGCTGCTGCCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRWWWCC*CCCHSP
Trigger: TGGAGAATGGCAGCAGCAGCAGCAGCACCACCACCA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATA +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSGRELV*SSRSKI
Trigger: TATCTTCGACCGAGAGGACCAGACCAGCTCACGTCC...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTATGGCCTTGCGTGCTTaGGATGCTGAAGTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCMALRA*DAEVLG
Trigger: GCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCAT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTGGCGTCGGTTTTGTaGGCTCAGCTGCCCATAGTC +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCELASVL*AQLPIV
Trigger: GACTATGGGCAGCTGAGCCCACAAAACCGACGCCAG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGACACGCACTTCCAGTCTaGCTCTCGAAGCCGCACCAT +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRHALPV*LSKPHH
Trigger: ATGGTGCGGCTTCGAGAGCCAGACTGGAAGTGCGTG...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCTGCAGCTCCCGGATaGCTGAGCGGATCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPAAAPG*LSGSAA
Trigger: GGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCGGGGTGGGCCATCCTaGAGCCTGGCAACCACGGGA +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCRGGPS*SLATTG
Trigger: TCCCGTGGTTGCCAGGCTCCAGGATGGCCCACCCCG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGCGGGCGGTGGGGTACTaGGCTCTTCTGAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGRAVGY*ALLSRA
Trigger: AGCCCTGCTCAGAAGAGCCCAGTACCCCACCGCCCG...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCCCGCTGGCTGTGCCTaGTGGTGGTCTCCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCPAGCA*WWSPWP
Trigger: TGGCCACGGAGACCACCACCAGGCACAGCCAGCGGG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCCCGCTGGCTGTGCCTaGTGGTGGTCTCCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWPAGCA*WWSPWP
Trigger: TGGCCACGGAGACCACCACCAGGCACAGCCAGCGGG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTGCCTGGGTCACCGCTaGCCGGCCTGCTTCAGCCAC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPCLGHR*PACFSH
Trigger: GTGGCTGAAGCAGGCCGGTCAGCGGTGACCCAGGCA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR TCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCAGGCTGCCAGGACGTaGGCTGGTCTGGTCCTCTCG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCQAART*AGLVLS
Trigger: CGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCGGCCTGTGGAGGCCTaGCCACGGCCATCCTTGATC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWRPVEA*PRPSLI
Trigger: GATCAAGGATGGCCGTGGTCAGGCCTCCACAGGCCG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCTGAAGGTAGTGACGTaGGTGACACTGCCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVLKVVT*VTLPSR
Trigger: CCGACTGGGCAGTGTCACTCACGTCACTACCTTCAG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAGGCCGTCAGCTCCTCTaGACTCAGGGGACTCCGCCC +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRAGRQLL*TQGTPP
Trigger: GGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCC...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGCCGTCAGCTCCTCTaGACTCAGGGGACTCCGCCC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPGRQLL*TQGTPP
Trigger: GGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCCGTTCTGCCAGATCTaGAGTGACCTCCAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSPFCQI*SDLQQF
Trigger: AAACTGCTGGAGGTCACTGCAGATCTGGCAGAACGG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCCTGCCTCCTaGTGTCCTCTCGGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPVLPAS*CPLGGH
Trigger: GTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCAC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGAATGTGTGTGCTGCCTaGCTCCTGCTGTCCTCTCGG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVNVCAA*LLLSSR
Trigger: CCGAGAGGACAGCAGGAGGCAGGCAGCACACACATT...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGATTCTGCTCTCTGGTTaGCTGTGGGCAGCAGCACCC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVILLSG*LWAAAP
Trigger: GGGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAAT...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGCCGCCCGCTGGCTGTaGCTGGTGGTGGTCTCCGTG +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSAARWL*LVVVSV
Trigger: CACGGAGACCACCACCAGGCACAGCCAGCGGGCGGC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGCGGGCCGTCTGAGTaGCATCATTGGAGTGAACGA +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRCGPSE*HHWSER
Trigger: TCGTTCACTCCAATGATGGCACTCAGACGGCCCGCA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGAACTCCACTGTGGTGGTaGGGGCCGTCTGAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: GGVGTAARSAGGVSRVARTPLWW*GPSECH
Trigger: ATGGCACTCAGACGGCCCGCACCACCACAGTGGAGT...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCACTAAAGGCAGGCGGGTaGGCCACGGGGGTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRALKAGG*ATGVPA
Trigger: TGCTGGGACCCCCGTGGCCCACCCGCCTGCCTTTAG...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTTCTTCTTCTCTGCCTaGCGTCTTTCAAGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCFFFSA*RLSRAA
Trigger: GGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCGTAGCCGCGGGTCTTaGCTCGGCACCAGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWRSRGS*LGTSPA
Trigger: TGCTGGACTGGTGCCGAGCCAAGACCCGCGGCTACG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCTGGCGTCGGTTTTGTaGGCTCAGCTGCCCATAGTC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVLASVL*AQLPIV
Trigger: GACTATGGGCAGCTGAGCCCACAAAACCGACGCCAG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGCACGGAAACGTTTaGACGCCAGAGCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEQHGNV*TPEPPL
Trigger: AAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCCTCGACATCATTCATaGACTCCAGTCTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCPRHHS*TPVSLP
Trigger: TGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGTCAATTCTGCTCTCTaGTTGCCTGTGGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEVNSAL*LPVGSS
Trigger: GCTGCTGCCCACAGGCAACCAGAGAGCAGAATTGAC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCCCGCTGGCTGTGCCTaGTGGTGGTCTCCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPPAGCA*WWSPWP
Trigger: TGGCCACGGAGACCACCACCAGGCACAGCCAGCGGG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCAGGCTGCCAGGACGTaGGCTGGTCTGGTCCTCTCG +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPQAART*AGLVLS
Trigger: CGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCAGCAACATCTGCTTaGTGCTATTGGCGTTGGGGA +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEPATSA*CYWRWG
Trigger: TCCCCAACGCCAATAGCATCAAGCAGATGTTGCTGG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTGTTTTCAAGGGACCTaGGAGCCAAGCCCCGCCCCC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWCFQGT*EPSPAP
Trigger: GGGGGCGGGGCTTGGCTCTCAGGTCCCTTGAAAACA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCGGCCTGTGGAGGCCTaGCCACGGCCATCCTTGATC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPRPVEA*PRPSLI
Trigger: GATCAAGGATGGCCGTGGTCAGGCCTCCACAGGCCG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCGGCCTGTGGAGGCCTaGCCACGGCCATCCTTGATC +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRRPVEA*PRPSLI
Trigger: GATCAAGGATGGCCGTGGTCAGGCCTCCACAGGCCG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGTCTCCAAGCGCCTCATaGAACTGGACTCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVSPSAS*NWTPLW
Trigger: CCACAGTGGAGTCCAGTTTCATGAGGCGCTTGGAGA...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTGCTGCTGCTGCTGCTaGCATCTCTCTTTCTTTGTC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCCCCCC*HLSFFV
Trigger: GACAAAGAAAGAGAGATGGCAGCAGCAGCAGCAGCA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCTCTTTCTTCTTCTCTaGCTGGCGTCTTTCAAGGGC +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCLFLLL*LASFKG
Trigger: GCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCAGCTGTACGGGGTGTaGCAGGACCACCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCQLYGV*QDHLQS
Trigger: GCTCTGCAGGTGGTCCTGGCACACCCCGTACAGCTG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTTCTCCTTGTTGTCTTaGCGCTCAGCACGGAAACGT +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCFSLLS*RSARKR
Trigger: ACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGTCGAGTACTTCTGTCTaGTGTTCCTGCTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCESSTSV*CSCCSG
Trigger: GCCAGAGCAGCAGGAACAGCAGACAGAAGTACTCGA...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTTTGGACCGTGGTGGTaGTGGTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGFGPWW*WCCCCC
Trigger: GCAGCAGCAGCAGCACCACCACCACCACGGTCCAAA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGGGATGCTGAAGTCTTaGGCAGACTCTGTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEGMLKS*ADSVPS
Trigger: TGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGATGGCCTTGCGTGCTTaGGATGCTGAAGTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVMALRA*DAEVLG
Trigger: GCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCAT...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCGTAGCCGCGGGTCTTaGCTCGGCACCAGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLRSRGS*LGTSPA
Trigger: TGCTGGACTGGTGCCGAGCCAAGACCCGCGGCTACG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACTGGCGTCGGTTTTGTaGGCTCAGCTGCCCATAGTC +
Preference number: 4 (lower is better)
Translates to: GGVGTAARSAGGVSRVARLASVL*AQLPIV
Trigger: GACTATGGGCAGCTGAGCCCACAAAACCGACGCCAG...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCTCGACATCATTCATaGACTCCAGTCTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEPRHHS*TPVSLP
Trigger: TGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCCACAGCAGGACACTaGGCTCCAGCAGGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSTAGH*APAGSS
Trigger: GCTGGAGCCTGCTGGAGCCCAGTGTCCTGCTGTGGA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCACGGGCGGTGGGGTACTaGGCTCTTCTGAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRARAVGY*ALLSRA
Trigger: AGCCCTGCTCAGAAGAGCCCAGTACCCCACCGCCCG...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGCAGCACCCGGCCTGTaGAGGCCTGACCACGGCCAT +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSAAPGL*RPDHGH
Trigger: ATGGCCGTGGTCAGGCCTCCACAGGCCGGGTGCTGC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGTCAATTCTGCTCTCTaGTTGCCTGTGGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVVNSAL*LPVGSS
Trigger: GCTGCTGCCCACAGGCAACCAGAGAGCAGAATTGAC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGACTCCACTGTGGTaGTGCGGGCCGTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCWTPLW*CGPSEC
Trigger: GCACTCAGACGGCCCGCACCACCACAGTGGAGTCCA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGAACTGGACTCCACTGTaGTGGTGCGGGCCGTCTGAG +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGNWTPL*WCGPSE
Trigger: CTCAGACGGCCCGCACCACCACAGTGGAGTCCAGTT...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGCGCAAACGCAGCTCATaGCGCCGCAGGTGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGRKRSS*RRRWLY
Trigger: GTACAACCACCTGCGGCGCCATGAGCTGCGTTTGCG...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS-3UTR TCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGAAGTGGCTCAGAGCTaGCTGGAGCCTCCACAGCAG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCEVAQS*LEPPQQ
Trigger: CTGCTGTGGAGGCTCCAGTCAGCTCTGAGCCACTTC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGAGTCCAAGGTATCTaGGGGCTCTGTGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLGVQGI*GLCGAR
Trigger: CCTGGCCCCACAGAGCCCTCAGATACCTTGGACTCC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGAGTCCAAGGTATCTaGGGGCTCTGTGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPGVQGI*GLCGAR
Trigger: CCTGGCCCCACAGAGCCCTCAGATACCTTGGACTCC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGTGTTTTCAAGGGACCTaGGAGCCAAGCCCCGCCCCC +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGCFQGT*EPSPAP
Trigger: GGGGGCGGGGCTTGGCTCTCAGGTCCCTTGAAAACA...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSELTQ*SPDELP
Trigger: AGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGACTCGGTCGAAGATACTaGCCATCTTTTTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRLGRRY*PSFWTR
Trigger: CCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAG...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRSQSWP*VLGMLK
Trigger: CTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCCGTTCTGCCAGATCTaGAGTGACCTCCAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVPFCQI*SDLQQF
Trigger: AAACTGCTGGAGGTCACTGCAGATCTGGCAGAACGG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGTCCAATGTGTGTGCTaGCTGCCTCCTGCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGVQCVC*LPPAVL
Trigger: GAGGACAGCAGGAGGCAGGCAGCACACACATTGGAC...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGAGGGTCCAATGTGTGTaGTGCCTGCCTCCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGRVQCV*CLPPAV
Trigger: GACAGCAGGAGGCAGGCAGCACACACATTGGACCCT...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCACTCCACTGTGGTGGTaGGGGCCGTCTGAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCTPLWW*GPSECH
Trigger: ATGGCACTCAGACGGCCCGCACCACCACAGTGGAGT...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTGCTGCTGCTGCTaGTGCCATTCTCCAAGCGCC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCWCCCC*CHSPSA
Trigger: GGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCACCA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGAAAAACTCTTGGTTTaGACCGTGGTGGTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSREKLLV*TVVVVV
Trigger: CACCACCACCACCACGGTCCAAACCAAGAGTTTTTC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTAAGAGGAAAAACTCTTaGTTTGGACCGTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCKRKNS*FGPWWW
Trigger: CCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGTTCTTCTTCTCTGCCTaGCGTCTTTCAAGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVFFFSA*RLSRAA
Trigger: GGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAA...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATG +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCELASQS*PCVLGM
Trigger: CATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCACATCCTGGCTaGTGTCCTCTGGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCWSHPG*CPLGLG
Trigger: CCCCAACCCCAGAGGACACCAGCCAGGATGTGACCA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTGGTCACATCCTGGCTaGTGTCCTCTGGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWWSHPG*CPLGLG
Trigger: CCCCAACCCCAGAGGACACCAGCCAGGATGTGACCA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGGCCATCCTGGAGCCTaGCAACCACGGGAGAATCAG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCGHPGA*QPRENQ
Trigger: CTGATTCTCCCGTGGTTGCCAGGCTCCAGGATGGCC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGCTTCATACTGCCCCCTaGCTCCCCAGTGCCAACGGC +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGLHTAP*LPSANG
Trigger: GCCGTTGGCACTGGGGAGCCAGGGGGCAGTATGAAG...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGAACTGGACTCCACTGTaGTGGTGCGGGCCGTCTGAG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWNWTPL*WCGPSE
Trigger: CTCAGACGGCCCGCACCACCACAGTGGAGTCCAGTT...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAGCTCTTCGGCTGCCTaGGCCACTGGCTCTACAGTG +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRASSSAA*ATGSTV
Trigger: CACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCT...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR TCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGCAGTGCAGCCCGGATaGGCTTCCTCTCCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWAVQPG*ASSPQS
Trigger: ACTTTGAGGAGAGGAAGCTCATCCGGGCTGCACTGC...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGCGGATGGCAGCTCTaGTCAGCTTGCGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPGGWQL*SACAPH
Trigger: ATGAGGAGCGCAAGCTGATCAGAGCTGCCATCCGCC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGAAGTGGCTCAGAGCTaGCTGGAGCCTCCACAGCAG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLEVAQS*LEPPQQ
Trigger: CTGCTGTGGAGGCTCCAGTCAGCTCTGAGCCACTTC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAGAAGTGGCTCAGAGCTaGCTGGAGCCTCCACAGCAG +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRAEVAQS*LEPPQQ
Trigger: CTGCTGTGGAGGCTCCAGTCAGCTCTGAGCCACTTC...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGAGGGCTAGGAGCTTCTaGAGGGTGTGGAAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWRARSF*RVWKWL
Trigger: GAGCCACTTCCACACCCTTCAGAAGCTCCTAGCCCT...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCGGGAGAATCAGATGTaGACTTTTGGACTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCERENQM*TFGLCL
Trigger: GAGACAGAGTCCAAAAGTTCACATCTGATTCTCCCG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCTGAAGGTAGTGACGTaGGTGACACTGCCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCLKVVT*VTLPSR
Trigger: CCGACTGGGCAGTGTCACTCACGTCACTACCTTCAG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCTCAGCACCTCCACCTaGCTGGTCAGTGCATCGAGC +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRLSTST*LVSASS
Trigger: GCTCGATGCACTGACCAGGCAGGTGGAGGTGCTGAG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp ATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCACCCAGCATCCTCAGCTaGCTGGAAGAGGGCCTCGGG +
Preference number: 4 (lower is better)
Translates to: MSSTSTKGTQSTSIRGAPPSILS*LEEGLG
Trigger: CCCGAGGCCCTCTTCCAGGCAGCTGAGGATGCTGGG...TGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGCCGTCAGCTCCTCTaGACTCAGGGGACTCCGCCC +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAAGRQLL*TQGTPP
Trigger: GGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCC...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRSELTQ*SPDELP
Trigger: AGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCTCGGTCGAAGATACTaGCCATCTTTTTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVLGRRY*PSFWTR
Trigger: CCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCTCTTTCTTCTTCTCTaGCTGGCGTCTTTCAAGGGC +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVLFLLL*LASFKG
Trigger: GCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGTCCAGCAACATCTaGTTGATGCTATTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEQSSNI*LMLLAL
Trigger: CAACGCCAATAGCATCAAGCAGATGTTGCTGGACTG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGACAGTCCAGCAACATCTaGTTGATGCTATTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRQSSNI*LMLLAL
Trigger: CAACGCCAATAGCATCAAGCAGATGTTGCTGGACTG...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCAGGGTCCAATGTGTGTaGTGCCTGCCTCCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCRVQCV*CLPPAV
Trigger: GACAGCAGGAGGCAGGCAGCACACACATTGGACCCT...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGAGGGTCCAATGTGTGTaGTGCCTGCCTCCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWRVQCV*CLPPAV
Trigger: GACAGCAGGAGGCAGGCAGCACACACATTGGACCCT...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGCCCCTGGCTCCCCAGTaGCAACGGCCACGGGCGGTG +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGPLAPQ*QRPRAV
Trigger: CACCGCCCGTGGCCGTTGGCACTGGGGAGCCAGGGG...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCATTCTGCTCTCTGGTTaGCTGTGGGCAGCAGCACCC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCILLSG*LWAAAP
Trigger: GGGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAAT...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTGCGGGCCGTCTGAGTaGCATCATTGGAGTGAACGA +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGCGPSE*HHWSER
Trigger: TCGTTCACTCCAATGATGGCACTCAGACGGCCCGCA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGACTCCACTGTGGTGGTaGGGGCCGTCTGAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRTPLWW*GPSECH
Trigger: ATGGCACTCAGACGGCCCGCACCACCACAGTGGAGT...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGTTTGGACCGTGGTGGTaGTGGTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLFGPWW*WCCCCC
Trigger: GCAGCAGCAGCAGCACCACCACCACCACGGTCCAAA...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGAAAAACTCTTGGTTTaGACCGTGGTGGTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVEKLLV*TVVVVV
Trigger: CACCACCACCACCACGGTCCAAACCAAGAGTTTTTC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGAAGAGGAAAAACTCTTaGTTTGGACCGTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEKRKNS*FGPWWW
Trigger: CCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTT...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAAAGAGGAAAAACTCTTaGTTTGGACCGTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRKRKNS*FGPWWW
Trigger: CCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTT...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATA +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGGRELV*SSRSKI
Trigger: TATCTTCGACCGAGAGGACCAGACCAGCTCACGTCC...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGATGGCCTTGCGTGCTTaGGATGCTGAAGTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGMALRA*DAEVLG
Trigger: GCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCAT...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCACGCACTTCCAGTCTaGCTCTCGAAGCCGCACCAT +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCHALPV*LSKPHH
Trigger: ATGGTGCGGCTTCGAGAGCCAGACTGGAAGTGCGTG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGCAGGAGTGTCACTGTaGTCACATCCTGGCTGGTGT +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGAGVSL*SHPGWC
Trigger: ACACCAGCCAGGATGTGACCACAGTGACACTCCTGC...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCTGGTGGGTGAATTGTaGGGGGAAGCAGGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCLVGEL*GEAGEL
Trigger: CAGCTCACCTGCTTCCCCCCACAATTCACCCACCAG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGGCCATCCTGGAGCCTaGCAACCACGGGAGAATCAG +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRGHPGA*QPRENQ
Trigger: CTGATTCTCCCGTGGTTGCCAGGCTCCAGGATGGCC...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGCCATCCTGGAGCCTaGCAACCACGGGAGAATCAG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLGHPGA*QPRENQ
Trigger: CTGATTCTCCCGTGGTTGCCAGGCTCCAGGATGGCC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTCGGGGTGGGCCATCCTaGAGCCTGGCAACCACGGGA +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCRGGPS*SLATTG
Trigger: TCCCGTGGTTGCCAGGCTCCAGGATGGCCCACCCCG...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGTCAATTCTGCTCTCTaGTTGCCTGTGGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGVNSAL*LPVGSS
Trigger: GCTGCTGCCCACAGGCAACCAGAGAGCAGAATTGAC...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGCTGGCTGTGCCTGGTaGTGGTCTCCGTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSAGCAW*WSPWPH
Trigger: ATGTGGCCACGGAGACCACCACCAGGCACAGCCAGC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCACCCGCTGGCTGTGCCTaGTGGTGGTCTCCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAAPAGCA*WWSPWP
Trigger: TGGCCACGGAGACCACCACCAGGCACAGCCAGCGGG...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTCATGGCGCCGCAGGTaGTTGTACAGCGATTGCACA +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGSWRRR*LYSDCT
Trigger: TGTGCAATCGCTGTACAACCACCTGCGGCGCCATGA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCGCAAACGCAGCTCATaGCGCCGCAGGTGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPRKRSS*RRRWLY
Trigger: GTACAACCACCTGCGGCGCCATGAGCTGCGTTTGCG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS-3UTR TCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCGTGCTTGGGATGCTaGAGTCTTGGGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLACLGC*SLGQTL
Trigger: CAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGAGGGCTAGGAGCTTCTaGAGGGTGTGGAAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPRARSF*RVWKWL
Trigger: GAGCCACTTCCACACCCTTCAGAAGCTCCTAGCCCT...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCACTGCTGGTGCTaGGAAGGGTTGGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGPHCWC*EGLGVP
Trigger: GGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGG...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCACTGAAGGTAGTGACGTaGGTGACACTGCCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRALKVVT*VTLPSR
Trigger: CCGACTGGGCAGTGTCACTCACGTCACTACCTTCAG...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTCTCCAAGCGCCTCATaGAACTGGACTCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCSPSAS*NWTPLW
Trigger: CCACAGTGGAGTCCAGTTTCATGAGGCGCTTGGAGA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCGATTGCACATAGGTaGAGACGCACTTGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLAIAHR*RRTWGR
Trigger: CCGACCCCAAGTGCGTCTTCACCTATGTGCAATCGC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS-3UTR GCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTCACCTGCCTGGTCAGTaGATCGAGCCGCCGGCTCAG +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCHLPGQ*IEPPAQ
Trigger: CTGAGCCGGCGGCTCGATGCACTGACCAGGCAGGTG...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSSELTQ*SPDELP
Trigger: AGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGA...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCAGTCCAGCAACATCTaGTTGATGCTATTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVQSSNI*LMLLAL
Trigger: CAACGCCAATAGCATCAAGCAGATGTTGCTGGACTG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCCAATGTGTGTGCTaGCTGCCTCCTGCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLVQCVC*LPPAVL
Trigger: GAGGACAGCAGGAGGCAGGCAGCACACACATTGGAC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGATTCTGCTCTCTGGTTaGCTGTGGGCAGCAGCACCC +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRILLSG*LWAAAP
Trigger: GGGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAAT...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGTGCTGCTGCTGCTGCTaGCATTCTCCAAGCGCCTCA +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGCCCCC*HSPSAS
Trigger: TGAGGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCA...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTGCTGCTGCTGCTGCTaGCATTCTCCAAGCGCCTCA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPCCCCC*HSPSAS
Trigger: TGAGGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCTGCTGCTGCTaGCATTCTCCAAGCGCCTCA +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRCCCCC*HSPSAS
Trigger: TGAGGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTGGTGGTGGTGCTGCTaGTGCTGCTGCCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPWWWCC*CCCHSP
Trigger: TGGAGAATGGCAGCAGCAGCAGCAGCACCACCACCA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAGGGCTCTGCAGGATCTaGCTCCATGAGACTGCTCCT +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRAGLCRI*LHETAP
Trigger: AGGAGCAGTCTCATGGAGCCAGATCCTGCAGAGCCC...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCTCCTTCGTCCTCAATaGCCGTCAGCTCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPLLRPQ*PSAPLH
Trigger: GTGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCTCCTTCGTCCTCAATaGCCGTCAGCTCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLLLRPQ*PSAPLH
Trigger: GTGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRSWFGP*WWWCCC
Trigger: GCAGCAGCACCACCACCACCACGGTCCAAACCAAGA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATA +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCGRELV*SSRSKI
Trigger: TATCTTCGACCGAGAGGACCAGACCAGCTCACGTCC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCACGTAGCCGCGGGTCTTaGCTCGGCACCAGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAARSRGS*LGTSPA
Trigger: TGCTGGACTGGTGCCGAGCCAAGACCCGCGGCTACG...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCTGGCGTCGGTTTTGTaGGCTCAGCTGCCCATAGTC +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLLASVL*AQLPIV
Trigger: GACTATGGGCAGCTGAGCCCACAAAACCGACGCCAG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCAGCACGGAAACGTTTaGACGCCAGAGCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCQHGNV*TPEPPL
Trigger: AAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCTGCTGCTCTGGCTCTaGCACCTTACCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLLLLWL*HLTRVQ
Trigger: TTGGACCCTGGTAAGGTGCCAGAGCCAGAGCAGCAG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGGTGTCCTCTGGGGTTaGGGTTGGCTCGAGTACTTC +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRGVLWG*GWLEYF
Trigger: GAAGTACTCGAGCCAACCCCAACCCCAGAGGACACC...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCTGGTGGGTGAATTGTaGGGGGAAGCAGGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLLVGEL*GEAGEL
Trigger: CAGCTCACCTGCTTCCCCCCACAATTCACCCACCAG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCTGGTGGGTGAATTGTaGGGGGAAGCAGGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPLVGEL*GEAGEL
Trigger: CAGCTCACCTGCTTCCCCCCACAATTCACCCACCAG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTCAGATGTGAACTTTTaGACTCTGTCTCTCACAGAG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSSDVNF*TLSLTE
Trigger: CTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGTCAATTCTGCTCTCTaGTTGCCTGTGGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCVNSAL*LPVGSS
Trigger: GCTGCTGCCCACAGGCAACCAGAGAGCAGAATTGAC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp ATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAGCTGGCTGTGCCTGGTaGTGGTCTCCGTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: MSSTSTKGTQSTSIRGAPAGCAW*WSPWPH
Trigger: ATGTGGCCACGGAGACCACCACCAGGCACAGCCAGC...TGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGCGTGCTTGGGATGCTaGAGTCTTGGGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSACLGC*SLGQTL
Trigger: CAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGCCCCACTGCTGGTGCTaGGAAGGGTTGGGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGPHCWC*EGLGVP
Trigger: GGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGG...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGTCTCCAAGCGCCTCATaGAACTGGACTCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGSPSAS*NWTPLW
Trigger: CCACAGTGGAGTCCAGTTTCATGAGGCGCTTGGAGA...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGCTCGGTCGAAGATACTaGCCATCTTTTTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGLGRRY*PSFWTR
Trigger: CCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAG...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTCAGCTGTACGGGGTGTaGCAGGACCACCTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCQLYGV*QDHLQS
Trigger: GCTCTGCAGGTGGTCCTGGCACACCCCGTACAGCTG...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTTCTCCTTGTTGTCTTaGCGCTCAGCACGGAAACGT +
Preference number: 4 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGFSLLS*RSARKR
Trigger: ACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTAATGTGTGTGCTGCCTaGCTCCTGCTGTCCTCTCGG +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSNVCAA*LLLSSR
Trigger: CCGAGAGGACAGCAGGAGGCAGGCAGCACACACATT...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGGTCTGCTGTTCCTGCTaGTCTGGCTCTGGCACCTTA +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGVCCSC*SGSGTL
Trigger: TAAGGTGCCAGAGCCAGAGCAGCAGGAACAGCAGAC...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTCTGCTGTTCCTGCTaGTCTGGCTCTGGCACCTTA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPVCCSC*SGSGTL
Trigger: TAAGGTGCCAGAGCCAGAGCAGCAGGAACAGCAGAC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCTGCTGTTCCTGCTaGTCTGGCTCTGGCACCTTA +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLVCCSC*SGSGTL
Trigger: TAAGGTGCCAGAGCCAGAGCAGCAGGAACAGCAGAC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCGAGTACTTCTGTCTaGTGTTCCTGCTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSSTSV*CSCCSG
Trigger: GCCAGAGCAGCAGGAACAGCAGACAGAAGTACTCGA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGAAAGAGGAAAAACTCTTaGTTTGGACCGTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GGVGTAARSAGGVSRVARKRKNS*FGPWWW
Trigger: CCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTT...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATA +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRGRELV*SSRSKI
Trigger: TATCTTCGACCGAGAGGACCAGACCAGCTCACGTCC...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTTCTTCTTCTCTGCCTaGCGTCTTTCAAGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCFFFSA*RLSRAA
Trigger: GGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGATGCTGAAGTCTTaGGCAGACTCTGTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWGMLKS*ADSVPS
Trigger: TGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCC...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCGTAGCCGCGGGTCTTaGCTCGGCACCAGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGRSRGS*LGTSPA
Trigger: TGCTGGACTGGTGCCGAGCCAAGACCCGCGGCTACG...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTCACGCACTTCCAGTCTaGCTCTCGAAGCCGCACCAT +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSHALPV*LSKPHH
Trigger: ATGGTGCGGCTTCGAGAGCCAGACTGGAAGTGCGTG...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCAGCACGGAAACGTTTaGACGCCAGAGCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRQHGNV*TPEPPL
Trigger: AAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCAGGAGTGTCACTGTaGTCACATCCTGGCTGGTGT +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLAGVSL*SHPGWC
Trigger: ACACCAGCCAGGATGTGACCACAGTGACACTCCTGC...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAGCAGGAGTGTCACTGTaGTCACATCCTGGCTGGTGT +
Preference number: 4 (lower is better)
Translates to: AARSAGGVSRVARHSCRAAGVSL*SHPGWC
Trigger: ACACCAGCCAGGATGTGACCACAGTGACACTCCTGC...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCGGGCGGTGGGGTACTaGGCTCTTCTGAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGRAVGY*ALLSRA
Trigger: AGCCCTGCTCAGAAGAGCCCAGTACCCCACCGCCCG...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTTGGACTCCACTGTGGTaGTGCGGGCCGTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCWTPLW*CGPSEC
Trigger: GCACTCAGACGGCCCGCACCACCACAGTGGAGTCCA...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTCATGGCGCCGCAGGTaGTTGTACAGCGATTGCACA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPSWRRR*LYSDCT
Trigger: TGTGCAATCGCTGTACAACCACCTGCGGCGCCATGA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCAGCATCTTCCAGTCTaGCTCTCGAAGCCGCACCAT +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRQHLPV*LSKPHH
Trigger: ATGGTGCGGCTTCGAGAGCCAGACTGGAAGATGCTG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110011.8
CDS-3UTR TCA 90 bp ATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAGCGTGCTTGGGATGCTaGAGTCTTGGGCAGACTCTG +
Preference number: 4 (lower is better)
Translates to: MSSTSTKGTQSTSIRGAPACLGC*SLGQTL
Trigger: CAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGC...TGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCCAGCAACATCTGCTTaGTGCTATTGGCGTTGGGGA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPPATSA*CYWRWG
Trigger: TCCCCAACGCCAATAGCATCAAGCAGATGTTGCTGG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCCAGCAACATCTGCTTaGTGCTATTGGCGTTGGGGA +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLPATSA*CYWRWG
Trigger: TCCCCAACGCCAATAGCATCAAGCAGATGTTGCTGG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCTCGGTCGAAGATACTaGCCATCTTTTTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWLGRRY*PSFWTR
Trigger: CCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCTCTTTCTTCTTCTCTaGCTGGCGTCTTTCAAGGGC +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCLFLLL*LASFKG
Trigger: GCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSQSWP*VLGMLK
Trigger: CTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCSQSWP*VLGMLK
Trigger: CTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCATCTGTATCCAGGAGCTaGGGGCAGTCCGCATGGGTC +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAASVSRS*GQSAWV
Trigger: GACCCATGCGGACTGCCCGCAGCTCCTGGATACAGA...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTTCTGTATCCAGGAGCTaGGGGCAGTCCGCATGGGTC +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCSVSRS*GQSAWV
Trigger: GACCCATGCGGACTGCCCGCAGCTCCTGGATACAGA...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCCGTTCTGCCAGATCTaGAGTGACCTCCAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRPFCQI*SDLQQF
Trigger: AAACTGCTGGAGGTCACTGCAGATCTGGCAGAACGG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTTCTCCTTGTTGTCTTaGCGCTCAGCACGGAAACGT +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCFSLLS*RSARKR
Trigger: ACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCGGGCCGTCTGAGTaGCATCATTGGAGTGAACGA +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSCGPSE*HHWSER
Trigger: TCGTTCACTCCAATGATGGCACTCAGACGGCCCGCA...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCACCTCCACCTGCCTaGTCAGTGCATCGAGCCGCC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGAPPPA*SVHRAA
Trigger: GGCGGCTCGATGCACTGACCAGGCAGGTGGAGGTGC...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATA +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSGRELV*SSRSKI
Trigger: TATCTTCGACCGAGAGGACCAGACCAGCTCACGTCC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTTCTTCTTCTCTGCCTaGCGTCTTTCAAGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPFFFSA*RLSRAA
Trigger: GGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTTCTTCTTCTCTGCCTaGCGTCTTTCAAGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRFFFSA*RLSRAA
Trigger: GGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGGGATGCTGAAGTCTTaGGCAGACTCTGTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRGMLKS*ADSVPS
Trigger: TGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCC...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGGATGCTGAAGTCTTaGGCAGACTCTGTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPGMLKS*ADSVPS
Trigger: TGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTATGGCCTTGCGTGCTTaGGATGCTGAAGTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSMALRA*DAEVLG
Trigger: GCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCAT...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWLASQS*PCVLGM
Trigger: CATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCLASQS*PCVLGM
Trigger: CATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAG...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTCAGCACGGAAACGTTTaGACGCCAGAGCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSQHGNV*TPEPPL
Trigger: AAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTG...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCCTCGACATCATTCATaGACTCCAGTCTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRPRHHS*TPVSLP
Trigger: TGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTTGGTCACATCCTGGCTaGTGTCCTCTGGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCWSHPG*CPLGLG
Trigger: CCCCAACCCCAGAGGACACCAGCCAGGATGTGACCA...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAAACTGGACTCCACTGTaGTGGTGCGGGCCGTCTGAG +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAANWTPL*WCGPSE
Trigger: CTCAGACGGCCCGCACCACCACAGTGGAGTCCAGTT...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAAGGGCTAGGAGCTTCTaGAGGGTGTGGAAGTGGCTC +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAARARSF*RVWKWL
Trigger: GAGCCACTTCCACACCCTTCAGAAGCTCCTAGCCCT...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTCTCTGCGCCATTAGCTaGTTCCACTGTGGTGGAGGG +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCLCAIS*FHCGGG
Trigger: CCCTCCACCACAGTGGAAGCAGCTAATGGCGCAGAG...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGTGGTGCTGCTGCTGCTaGTGCCATCTCTCTTTCTTT +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGWCCCC*CHLSFF
Trigger: AAAGAAAGAGAGATGGCAGCAGCAGCAGCAGCACCA...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCTCGGTCGAAGATACTaGCCATCTTTTTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPLGRRY*PSFWTR
Trigger: CCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAG +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPSQSWP*VLGMLK
Trigger: CTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGTTCTCCTTGTTGTCTTaGCGCTCAGCACGGAAACGT +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGFSLLS*RSARKR
Trigger: ACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAA...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGGAAAAACTCTTGGTTTaGACCGTGGTGGTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGEKLLV*TVVVVV
Trigger: CACCACCACCACCACGGTCCAAACCAAGAGTTTTTC...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATG +
Preference number: 4 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLLASQS*PCVLGM
Trigger: CATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAG...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGTCCACAGCAGGACACTaGGCTCCAGCAGGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGSTAGH*APAGSS
Trigger: GCTGGAGCCTGCTGGAGCCCAGTGTCCTGCTGTGGA...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGCTTCATACTGCCCCCTaGCTCCCCAGTGCCAACGGC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGLHTAP*LPSANG
Trigger: GCCGTTGGCACTGGGGAGCCAGGGGGCAGTATGAAG...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCAGGATCTGGCTCCATaGGACTGCTCCTTCGAGAGG +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGQDLAP*DCSFER
Trigger: CCTCTCGAAGGAGCAGTCTCATGGAGCCAGATCCTG...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR TCA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCGGGAGAATCAGATGTaGACTTTTGGACTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPRENQM*TFGLCL
Trigger: GAGACAGAGTCCAAAAGTTCACATCTGATTCTCCCG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCATGGTGGTGCTGCTGCTaGTGCTGCCATCTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAAWWCCC*CCHLSF
Trigger: GAAAGAGAGATGGCAGCAGCAGCAGCAGCACCACCA...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR GCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTCTCTTTCTTCTTCTCTaGCTGGCGTCTTTCAAGGGC +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSLFLLL*LASFKG
Trigger: GCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAG...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGTGGTGCTGCTGCTGCTaGTGCCATTCTCCAAGCGCC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGWCCCC*CHSPSA
Trigger: GGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCACCA...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATG +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSLASQS*PCVLGM
Trigger: CATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAG...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp ATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCACCTCGACATCATTCATaGACTCCAGTCTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: MSSTSTKGTQSTSIRGAPPRHHS*TPVSLP
Trigger: TGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGG...TGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR TCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCACCAGCAACATCTGCTTaGTGCTATTGGCGTTGGGGA +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAAPATSA*CYWRWG
Trigger: TCCCCAACGCCAATAGCATCAAGCAGATGTTGCTGG...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp ATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCACTCTTTCTTCTTCTCTaGCTGGCGTCTTTCAAGGGC +
Preference number: 4 (lower is better)
Translates to: MSSTSTKGTQSTSIRGAPLFLLL*LASFKG
Trigger: GCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAG...TGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTCAGTCCAGCAACATCTaGTTGATGCTATTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: VGTAARSAGGVSRVARHSQSSNI*LMLLAL
Trigger: CAACGCCAATAGCATCAAGCAGATGTTGCTGGACTG...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCACCGTTCTGCCAGATCTaGAGTGACCTCCAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAAPFCQI*SDLQQF
Trigger: AAACTGCTGGAGGTCACTGCAGATCTGGCAGAACGG...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCATCGAGTACTTCTGTCTaGTGTTCCTGCTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAASSTSV*CSCCSG
Trigger: GCCAGAGCAGCAGGAACAGCAGACAGAAGTACTCGA...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGATTCTGCTCTCTGGTTaGCTGTGGGCAGCAGCACCC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGILLSG*LWAAAP
Trigger: GGGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAAT...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGTGCTGCTGCTGCTGCTaGCATTCTCCAAGCGCCTCA +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGCCCCC*HSPSAS
Trigger: TGAGGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCA...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGCTCCTTCGTCCTCAATaGCCGTCAGCTCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGLLRPQ*PSAPLH
Trigger: GTGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAG...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGGCAGGAGTGTCACTGTaGTCACATCCTGGCTGGTGT +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGAGVSL*SHPGWC
Trigger: ACACCAGCCAGGATGTGACCACAGTGACACTCCTGC...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCAGATGTGAACTTTTaGACTCTGTCTCTCACAGAG +
Preference number: 4 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSDVNF*TLSLTE
Trigger: CTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTCAGATGTGAACTTTTaGACTCTGTCTCTCACAGAG +
Preference number: 4 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCSDVNF*TLSLTE
Trigger: CTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGTCGAGTACTTCTGTCTaGTGTTCCTGCTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGSSTSV*CSCCSG
Trigger: GCCAGAGCAGCAGGAACAGCAGACAGAAGTACTCGA...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGTCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAG +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGSQSWP*VLGMLK
Trigger: CTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGA...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR GCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCACAGTCCAGCAACATCTaGTTGATGCTATTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAAQSSNI*LMLLAL
Trigger: CAACGCCAATAGCATCAAGCAGATGTTGCTGGACTG...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGGAAAAACTCTTGGTTTaGACCGTGGTGGTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGEKLLV*TVVVVV
Trigger: CACCACCACCACCACGGTCCAAACCAAGAGTTTTTC...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTTCAGATGTGAACTTTTaGACTCTGTCTCTCACAGAG +
Preference number: 4 (lower is better)
Translates to: VARHSCRANAAHGAAGGCSDVNF*TLSLTE
Trigger: CTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGA...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CCA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAAGTTCTTGTAATGCCTaGCTCAACTGTTCTTCAAAG +
Preference number: 4 (lower is better)
Translates to: VSRVARHSCRANAAHGAASSCNA*LNCSSK
Trigger: CTTTGAAGAACAGTTGAGCCAGGCATTACAAGAACT...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 90 bp CAGCCGCCCGCTGGCTGTGCCTGGTGGTGGTCTCCGTGGCCACATTaGTTCGGCTCTCGCCCGGCCGGGCCCGTGCCTCCCGTAGCCTCC +
Preference number: 5 (lower is better)
Translates to: QPPAGCAWWWSPWPH*FGSRPAGPVPPVAS
Trigger: GGAGGCTACGGGAGGCACGGGCCCGGCCGGGCGAGAGCCGAAGCAATGTGGCCACGGAGACCACCACCAGGCACAGCCAGCGGGCGGCTG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCRPSGP*STRACS
Trigger: AGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCCCAGGGCCCTCCTCTaGAGGGCAGCTCTGAAGCTC +
Preference number: 5 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSPRALL*RAALKL
Trigger: GAGCTTCAGAGCTGCCCTCAAGAGGAGGGCCCTGGG...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTCCCAGGGCCCTCCTCTaGAGGGCAGCTCTGAAGCTC +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCPRALL*RAALKL
Trigger: GAGCTTCAGAGCTGCCCTCAAGAGGAGGGCCCTGGG...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGACCCAGGGCCCTCCTCTaGAGGGCAGCTCTGAAGCTC +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRPRALL*RAALKL
Trigger: GAGCTTCAGAGCTGCCCTCAAGAGGAGGGCCCTGGG...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCCCAGGGCCCTCCTCTaGAGGGCAGCTCTGAAGCTC +
Preference number: 5 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEPRALL*RAALKL
Trigger: GAGCTTCAGAGCTGCCCTCAAGAGGAGGGCCCTGGG...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVRPSGP*STRACS
Trigger: AGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCVWSSI*SRTPSS
Trigger: GGACGAAGGAGTCCTGGACAAGATGCTGGACCAGAC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGTTCTGGCGTCGGTTTaGTGGGCTCAGCTGCCCATA +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCVLASV*WAQLPI
Trigger: TATGGGCAGCTGAGCCCACAAAACCGACGCCAGAAC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTAATTCTGCTCTCTGGTaGCCTGTGGGCAGCAGCACC +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCNSALW*PVGSST
Trigger: GGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAATT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGGGTGATGGTGTTCTaGCCCCCACTGCTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRWVMVF*PPLLVL
Trigger: CAGCACCAGCAGTGGGGGCAAGAACACCATCACCCA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEVWSSI*SRTPSS
Trigger: GGACGAAGGAGTCCTGGACAAGATGCTGGACCAGAC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGTTCTGGCGTCGGTTTaGTGGGCTCAGCTGCCCATA +
Preference number: 5 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEVLASV*WAQLPI
Trigger: TATGGGCAGCTGAGCCCACAAAACCGACGCCAGAAC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTTCTGGCGTCGGTTTaGTGGGCTCAGCTGCCCATA +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRVLASV*WAQLPI
Trigger: TATGGGCAGCTGAGCCCACAAAACCGACGCCAGAAC...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGTTCTCCTTGTTGTCTaGCCGCTCAGCACGGAAACG +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCVLLVV*PLSTET
Trigger: CGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAAC...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGAGCCAGTTCTCCTTGTaGTCTTGCCGCTCAGCACGG +
Preference number: 5 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCESQFSL*SCRSAR
Trigger: CCGTGCTGAGCGGCAAGACAACAAGGAGAACTGGCT...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGTGGTGTCCTCTGGGGTaGGGGTTGGCTCGAGTACTT +
Preference number: 5 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEWCPLG*GLARVL
Trigger: AAGTACTCGAGCCAACCCCAACCCCAGAGGACACCA...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTCGATTTGGGGTTGGTaGTCGGGGACTGAGCACAGA +
Preference number: 5 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSSIWGW*SGTEHR
Trigger: TCTGTGCTCAGTCCCCGACAACCAACCCCAAATCGA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAAATTCTGCTCTCTGGTaGCCTGTGGGCAGCAGCACC +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRNSALW*PVGSST
Trigger: GGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAATT...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 90 bp GGTGGTGCTGATGAGGGAAGGGCCCGGGAGCCTTGTGGGGGTCGGTaGAGCAAGGGCTGTTCGGGGTGGGCCATCCTGGAGCCTGGCAAC +
Preference number: 5 (lower is better)
Translates to: GGADEGRAREPCGGR*SKGCSGWAILEPGN
Trigger: GTTGCCAGGCTCCAGGATGGCCCACCCCGAACAGCCCTTGCTTCACCGACCCCCACAAGGCTCCCGGGCCCTTCCCTCATCAGCACCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWRPSGP*STRACS
Trigger: AGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCATCTGCTTGATGCTATaGGCGTTGGGGACTCCGAAG +
Preference number: 5 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSICLML*ALGTPK
Trigger: CTTCGGAGTCCCCAACGCCAATAGCATCAAGCAGAT...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTATCTGCTTGATGCTATaGGCGTTGGGGACTCCGAAG +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCICLML*ALGTPK
Trigger: CTTCGGAGTCCCCAACGCCAATAGCATCAAGCAGAT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCTCCAGCAACATCTGCTaGATGCTATTGGCGTTGGGG +
Preference number: 5 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSSSNIC*MLLALG
Trigger: CCCCAACGCCAATAGCATCAAGCAGATGTTGCTGGA...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGTTCTGGCGTCGGTTTaGTGGGCTCAGCTGCCCATA +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVVLASV*WAQLPI
Trigger: TATGGGCAGCTGAGCCCACAAAACCGACGCCAGAAC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGTCAGCACGGAAACGTTaGGACGCCAGAGCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVSARKR*DARASS
Trigger: AGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGA...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGAGCCAGTTCTCCTTGTaGTCTTGCCGCTCAGCACGG +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVSQFSL*SCRSAR
Trigger: CCGTGCTGAGCGGCAAGACAACAAGGAGAACTGGCT...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGGCAGCTCTGATCAGCTaGCGCTCCTCATATTCACCG +
Preference number: 5 (lower is better)
Translates to: RCRCWGRGDSSPQRRRCEAALIS*RSSYSP
Trigger: CGGTGAATATGAGGAGCGCAAGCTGATCAGAGCTGC...CTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 90 bp CGCCGGCTCAGAGCTGCCGTCTCTGCTCGAAGCTCTTCGGCTGCCTaGGCCACTGGCTCTACAGTGGCCAGAGCTGCATCGGCTGCCTGG +
Preference number: 5 (lower is better)
Translates to: RRLRAAVSARSSSAA*ATGSTVARAASAAW
Trigger: CCAGGCAGCCGATGCAGCTCTGGCCACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTGAGCCGGCG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 90 bp GAGCCGCCGGCTCAGAGCTGCCGTCTCTGCTCGAAGCTCTTCGGCTaGCTGAGCCACTGGCTCTACAGTGGCCAGAGCTGCATCGGCTGC +
Preference number: 5 (lower is better)
Translates to: EPPAQSCRLCSKLFG*LSHWLYSGQSCIGC
Trigger: GCAGCCGATGCAGCTCTGGCCACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTGAGCCGGCGGCTC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 90 bp CACCTCCACCTGCCTGGTCAGTGCATCGAGCCGCCGGCTCAGAGCTaGCGTCTCTGCTCGAAGCTCTTCGGCTGCCTGAGCCACTGGCTC +
Preference number: 5 (lower is better)
Translates to: HLHLPGQCIEPPAQS*RLCSKLFGCLSHWL
Trigger: GAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTGAGCCGGCGGCTCGATGCACTGACCAGGCAGGTGGAGGTG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRRPSGP*STRACS
Trigger: AGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCG...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTATACTGCCCATCTTTTaGGACGAGGACGAGGAAGAG +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCILPIF*DEDEEE
Trigger: CTCTTCCTCGTCCTCGTCCAAAAAGATGGGCAGTAT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGTGGGATGCTGAAGTCTaGGGCAGACTCTGTGCCTTC +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVWDAEV*GRLCAF
Trigger: GAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCA...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAATCTGCTTGATGCTATaGGCGTTGGGGACTCCGAAG +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRICLML*ALGTPK
Trigger: CTTCGGAGTCCCCAACGCCAATAGCATCAAGCAGAT...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATGTAGCCAGTTCTCCTaGTTGTCTTGCCGCTCAGCA +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRCSQFS*LSCRSA
Trigger: TGCTGAGCGGCAAGACAACAAGGAGAACTGGCTACA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTTCTGCTCTCTTAGTGTaGGAGAAGCCTCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCSALLV*EKPLME
Trigger: CTCCATCAGAGGCTTCTCCAACACTAAGAGAGCAGA...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGTCCTGCAAGTGAGGTaGGCTCTCGATTTGGGGTTG +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVVLQVR*ALDLGL
Trigger: CAACCCCAAATCGAGAGCCAACCTCACTTGCAGGAC...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTGGGTGATGGTGTTCTaGCCCCCACTGCTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGWVMVF*PPLLVL
Trigger: CAGCACCAGCAGTGGGGGCAAGAACACCATCACCCA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGAGTCACAGTCCCAGGGTaGCTGATGTGGGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: GGVGTAARSAGGVSRVARVTVPG*LMWVMV
Trigger: CACCATCACCCACATCAGCAACCCTGGGACTGTGAC...TCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGCTGGTCTCTCTTTCTTaGTCGGAGCTCACGCAGTGC +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVLVSLS*SELTQC
Trigger: GCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAG...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATTGGGGTCGGGCTTTTaGCCCATGATCATCATGTCC +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRLGSGF*PMIIMS
Trigger: GGACATGATGATCATGGGCAAAAAGCCCGACCCCAA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS GCA 90 bp GGGTTGGGGGTGCCCGCAATCCCAAAGTCAATTCTGCTCTCTGGTTaGCTGTGGGCAGCAGCACCCGGCCTGTGGAGGCCTGACCACGGC +
Preference number: 5 (lower is better)
Translates to: GLGVPAIPKSILLSG*LWAAAPGLWRPDHG
Trigger: GCCGTGGTCAGGCCTCCACAGGCCGGGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAATTGACTTTGGGATTGCGGGCACCCCCAACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp CAGAGCTGCCGTCTCTGCTCGAAGCTCTTCGGCTGCCTGAGCCACTaGCTCTACAGTGGCCAGAGCTGCATCGGCTGCCTGGGTCACCGC +
Preference number: 5 (lower is better)
Translates to: QSCRLCSKLFGCLSH*LYSGQSCIGCLGHR
Trigger: GCGGTGACCCAGGCAGCCGATGCAGCTCTGGCCACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CAA 90 bp GCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGATCTGCTCTCTTAGTGTaGGAGAAGCCTCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: AGAGGVGTAARSAGGVSRSALLV*EKPLME
Trigger: CTCCATCAGAGGCTTCTCCAACACTAAGAGAGCAGA...TCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGTGATGGTGTTCTaGCCCCCACTGCTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCWVMVF*PPLLVL
Trigger: CAGCACCAGCAGTGGGGGCAAGAACACCATCACCCA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 90 bp CTCCTCTTCTCGTTCCAGCTCCTGTCGCTGCAGCTCCCGGATGGCTaGGCGGATCCGCCGCCGTTCTGCCAGATCTGCAGTGACCTCCAG +
Preference number: 5 (lower is better)
Translates to: LLFSFQLLSLQLPDG*ADPPPFCQICSDLQ
Trigger: CTGGAGGTCACTGCAGATCTGGCAGAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGCGACAGGAGCTGGAACGAGAAGAGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS GCA 90 bp TCGGGCACAAGTGGAACACCCAGCCGTAAGCTCAGCACCTCCACCTaGCTGGTCAGTGCATCGAGCCGCCGGCTCAGAGCTGCCGTCTCT +
Preference number: 5 (lower is better)
Translates to: SGTSGTPSRKLSTST*LVSASSRRLRAAVS
Trigger: AGAGACGGCAGCTCTGAGCCGGCGGCTCGATGCACTGACCAGGCAGGTGGAGGTGCTGAGCTTACGGCTGGGTGTTCCACTTGTGCCCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS CCA 90 bp GCACAAGTGGAACACCCAGCCGTAAGCTCAGCACCTCCACCTGCCTaGTCAGTGCATCGAGCCGCCGGCTCAGAGCTGCCGTCTCTGCTC +
Preference number: 5 (lower is better)
Translates to: AQVEHPAVSSAPPPA*SVHRAAGSELPSLL
Trigger: GAGCAGAGACGGCAGCTCTGAGCCGGCGGCTCGATGCACTGACCAGGCAGGTGGAGGTGCTGAGCTTACGGCTGGGTGTTCCACTTGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CAA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWVWSSI*SRTPSS
Trigger: GGACGAAGGAGTCCTGGACAAGATGCTGGACCAGAC...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCVWSSI*SRTPSS
Trigger: GGACGAAGGAGTCCTGGACAAGATGCTGGACCAGAC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTGGGATGCTGAAGTCTaGGGCAGACTCTGTGCCTTC +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGWDAEV*GRLCAF
Trigger: GAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGTTCTCAATCATGGCCTaGCGTGCTTGGGATGCTGAA +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVFSIMA*RAWDAE
Trigger: TTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAA...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTCAGCACGGAAACGTTaGGACGCCAGAGCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCSARKR*DARASS
Trigger: AGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTCAGCACGGAAACGTTaGGACGCCAGAGCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSARKR*DARASS
Trigger: AGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGGTTCTCCTTGTTGTCTaGCCGCTCAGCACGGAAACG +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGVLLVV*PLSTET
Trigger: CGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAAC...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTGTCCTCTGGGGTaGGGGTTGGCTCGAGTACTT +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCWCPLG*GLARVL
Trigger: AAGTACTCGAGCCAACCCCAACCCCAGAGGACACCA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGTGGTGTCCTCTGGGGTaGGGGTTGGCTCGAGTACTT +
Preference number: 5 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWWCPLG*GLARVL
Trigger: AAGTACTCGAGCCAACCCCAACCCCAGAGGACACCA...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTCGATTTGGGGTTGGTaGTCGGGGACTGAGCACAGA +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGSIWGW*SGTEHR
Trigger: TCTGTGCTCAGTCCCCGACAACCAACCCCAAATCGA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGAGTTCTCTCTGCTTCTaGTGGGAGGAAGTGTCACTG +
Preference number: 5 (lower is better)
Translates to: GAGGVGTAARSAGGVSRVSSLCF*WEEVSL
Trigger: CAGTGACACTTCCTCCCACAAGAAGCAGAGAGAACT...CACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp TGTGGAAGTGGCTCAGAGCTGACTGGAGCCTCCACAGCAGGACACTaGGCTCCAGCAGGCTCCAGCAGAGGCTCTGGAGAGGCACTGGTG +
Preference number: 5 (lower is better)
Translates to: CGSGSELTGASTAGH*APAGSSRGSGEALV
Trigger: CACCAGTGCCTCTCCAGAGCCTCTGCTGGAGCCTGCTGGAGCCCAGTGTCCTGCTGTGGAGGCTCCAGTCAGCTCTGAGCCACTTCCACA
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: VARHSCRANAAHGAAGGCRPSGP*STRACS
Trigger: AGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCG...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTTGATGCTATTGGCGTaGGGGACTCCGAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGLMLLA*GTPKLV
Trigger: TACCAGCTTCGGAGTCCCCAACGCCAATAGCATCAA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp CCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCAGGGGTTCTGGCGTCGGTTTaGTGGGCTCAGCTGCCCATA +
Preference number: 5 (lower is better)
Translates to: PPPPRVHSPPASVGPQAGVLASV*WAQLPI
Trigger: TATGGGCAGCTGAGCCCACAAAACCGACGCCAGAAC...CCCTGCTTGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTCAGCACGGAAACGTTaGGACGCCAGAGCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRSARKR*DARASS
Trigger: AGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGTTCTCCTTGTTGTCTaGCCGCTCAGCACGGAAACG +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCVLLVV*PLSTET
Trigger: CGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAAC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCGTCCTGCAAGTGAGGTaGGCTCTCGATTTGGGGTTG +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCVLQVR*ALDLGL
Trigger: CAACCCCAAATCGAGAGCCAACCTCACTTGCAGGAC...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGGAGGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTATCAGATGTGAACTTTaGGACTCTGTCTCTCACAGA +
Preference number: 5 (lower is better)
Translates to: GRCRCWGRGDSSPQRRRCIRCEL*DSVSHR
Trigger: TCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGAT...ACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACCTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGCCGGTGCTGGGGGCGTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCATCAGATGTGAACTTTaGGACTCTGTCTCTCACAGA +
Preference number: 5 (lower is better)
Translates to: GAGAGGVGTAARSAGGVSIRCEL*DSVSHR
Trigger: TCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGAT...GCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCACGCCCCCAGCACCGGCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGAATTCTGCTCTCTGGTaGCCTGTGGGCAGCAGCACC +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRNSALW*PVGSST
Trigger: GGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAATT...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAGTCACAGTCCCAGGGTaGCTGATGTGGGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: AARSAGGVSRVARHSCRAVTVPG*LMWVMV
Trigger: CACCATCACCCACATCAGCAACCCTGGGACTGTGAC...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGTCACAGTCCCAGGGTaGCTGATGTGGGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRVTVPG*LMWVMV
Trigger: CACCATCACCCACATCAGCAACCCTGGGACTGTGAC...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGCTGGTCTCTCTTTCTTaGTCGGAGCTCACGCAGTGC +
Preference number: 5 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWLVSLS*SELTQC
Trigger: GCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAG...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGTTGGGGTCGGGCTTTTaGCCCATGATCATCATGTCC +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGLGSGF*PMIIMS
Trigger: GGACATGATGATCATGGGCAAAAAGCCCGACCCCAA...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000075118.10
ENSMUST00000110011.8
CDS GCA 90 bp TTCCTGCTGCTCTGGCTCTGGCACCTTACCAGGGTCCAATGTGTGTaGTGCCTGCCTCCTGCTGTCCTCTCGGGGGCCACTACTGGGAAG +
Preference number: 5 (lower is better)
Translates to: FLLLWLWHLTRVQCV*CLPPAVLSGATTGK
Trigger: CTTCCCAGTAGTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCACACACATTGGACCCTGGTAAGGTGCCAGAGCCAGAGCAGCAGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGATACTGCCCATCTTTTaGGACGAGGACGAGGAAGAG +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGILPIF*DEDEEE
Trigger: CTCTTCCTCGTCCTCGTCCAAAAAGATGGGCAGTAT...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTGGGATGCTGAAGTCTaGGGCAGACTCTGTGCCTTC +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPWDAEV*GRLCAF
Trigger: GAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGGGATGCTGAAGTCTaGGGCAGACTCTGTGCCTTC +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRWDAEV*GRLCAF
Trigger: GAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTCCAGCAACATCTGCTaGATGCTATTGGCGTTGGGG +
Preference number: 5 (lower is better)
Translates to: GVLTDGAAVGRRTGRCRCSSNIC*MLLALG
Trigger: CCCCAACGCCAATAGCATCAAGCAGATGTTGCTGGA...GCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTTCTCCTTGTTGTCTaGCCGCTCAGCACGGAAACG +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPVLLVV*PLSTET
Trigger: CGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAAC...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGGCAGCTCTGATCAGCTaGCGCTCCTCATATTCACCG +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRAALIS*RSSYSP
Trigger: CGGTGAATATGAGGAGCGCAAGCTGATCAGAGCTGC...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCATCGATTTGGGGTTGGTaGTCGGGGACTGAGCACAGA +
Preference number: 5 (lower is better)
Translates to: AARSAGGVSRVARHSCRASIWGW*SGTEHR
Trigger: TCTGTGCTCAGTCCCCGACAACCAACCCCAAATCGA...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGCTGGTCTCTCTTTCTTaGTCGGAGCTCACGCAGTGC +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPLVSLS*SELTQC
Trigger: GCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAG...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCACTGGTCTCTCTTTCTTaGTCGGAGCTCACGCAGTGC +
Preference number: 5 (lower is better)
Translates to: AARSAGGVSRVARHSCRALVSLS*SELTQC
Trigger: GCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAG...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS TCA 90 bp CAGCCTCCTCGGTTACCAGGGGAGGCATGGCTGAAGGTAGTGACGTaGGTGACACTGCCCAGTCGGGTCACAGTCCCAGGGTTGCTGATG +
Preference number: 5 (lower is better)
Translates to: QPPRLPGEAWLKVVT*VTLPSRVTVPGLLM
Trigger: CATCAGCAACCCTGGGACTGTGACCCGACTGGGCAGTGTCACTCACGTCACTACCTTCAGCCATGCCTCCCCTGGTAACCGAGGAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 90 bp TGGTGGTGGTGCTGCTGCTGCTGCTGCCATTCTCCAAGCGCCTCATaGAACTGGACTCCACTGTGGTGGTGCGGGCCGTCTGAGTGCCAT +
Preference number: 5 (lower is better)
Translates to: WWWCCCCCCHSPSAS*NWTPLWWCGPSECH
Trigger: ATGGCACTCAGACGGCCCGCACCACCACAGTGGAGTCCAGTTTCATGAGGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCACCACCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 90 bp TGCTCTGGCTCTGGCACCTTACCAGGGTCCAATGTGTGTGCTGCCTaGCTCCTGCTGTCCTCTCGGGGGCCACTACTGGGAAGTCTACTG +
Preference number: 5 (lower is better)
Translates to: CSGSGTLPGSNVCAA*LLLSSRGPLLGSLL
Trigger: CAGTAGACTTCCCAGTAGTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCACACACATTGGACCCTGGTAAGGTGCCAGAGCCAGAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGCCATCTCTCTTTCTTaGTCGGAGCTCACGCAGTGC +
Preference number: 5 (lower is better)
Translates to: VGTAARSAGGVSRVARHSAISLS*SELTQC
Trigger: GCACTGCGTGAGCTCCGACAAAGAAAGAGAGATGGC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTTGATGCTATTGGCGTaGGGGACTCCGAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPLMLLA*GTPKLV
Trigger: TACCAGCTTCGGAGTCCCCAACGCCAATAGCATCAA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGATCTGCTTGATGCTATaGGCGTTGGGGACTCCGAAG +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPICLML*ALGTPK
Trigger: CTTCGGAGTCCCCAACGCCAATAGCATCAAGCAGAT...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGTCCAGCAACATCTGCTaGATGCTATTGGCGTTGGGG +
Preference number: 5 (lower is better)
Translates to: CFDRRGSSGQAHWEVPVLSSNIC*MLLALG
Trigger: CCCCAACGCCAATAGCATCAAGCAGATGTTGCTGGA...CAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTCCAGCAACATCTGCTaGATGCTATTGGCGTTGGGG +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPSSNIC*MLLALG
Trigger: CCCCAACGCCAATAGCATCAAGCAGATGTTGCTGGA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp ATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGCCCCAAGCCAGTTCTCCTTGTaGTCTTGCCGCTCAGCACGG +
Preference number: 5 (lower is better)
Translates to: MSSTSTKGTQSTSIRGAPSQFSL*SCRSAR
Trigger: CCGTGCTGAGCGGCAAGACAACAAGGAGAACTGGCT...TGGGGCCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTCGATTTGGGGTTGGTaGTCGGGGACTGAGCACAGA +
Preference number: 5 (lower is better)
Translates to: VGTAARSAGGVSRVARHSSIWGW*SGTEHR
Trigger: TCTGTGCTCAGTCCCCGACAACCAACCCCAAATCGA...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTGTCCTGCAAGTGAGGTaGGCTCTCGATTTGGGGTTG +
Preference number: 5 (lower is better)
Translates to: VGTAARSAGGVSRVARHSVLQVR*ALDLGL
Trigger: CAACCCCAAATCGAGAGCCAACCTCACTTGCAGGAC...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGAGTTCTCTCTGCTTCTaGTGGGAGGAAGTGTCACTG +
Preference number: 5 (lower is better)
Translates to: VLTDGAAVGRRTGRCRCWSSLCF*WEEVSL
Trigger: CAGTGACACTTCCTCCCACAAGAAGCAGAGAGAACT...CCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 90 bp CCTGCCAATCGTGCGAGGGCGGCCTGCTGTTCAGCTTCTCGCTGTTaGGAGTGTAGCCAGTTCTCCTTGTTGTCTTGCCGCTCAGCACGG +
Preference number: 5 (lower is better)
Translates to: PANRARAACCSASRC*ECSQFSLLSCRSAR
Trigger: CCGTGCTGAGCGGCAAGACAACAAGGAGAACTGGCTACACTCTCAACAGCGAGAAGCTGAACAGCAGGCCGCCCTCGCACGATTGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS TCA 90 bp AGTCTACTGCACAGTCTCCCAGCCAAGGTGGCAGCCTTAATCTCCTaGGCTCGCACTCGGCGGATGGCAGCTCTGATCAGCTTGCGCTCC +
Preference number: 5 (lower is better)
Translates to: SLLHSLPAKVAALIS*ARTRRMAALISLRS
Trigger: GGAGCGCAAGCTGATCAGAGCTGCCATCCGCCGAGTGCGAGCTCAGGAGATTAAGGCTGCCACCTTGGCTGGGAGACTGTGCAGTAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS GCA 90 bp CAGTCTGGCTCTCGAAGCCGCACCATGTCCTCTGTATCCAGGAGCTaGGGGCAGTCCGCATGGGTCTCAGCGGATGAGAAGGCCATTTCA +
Preference number: 5 (lower is better)
Translates to: QSGSRSRTMSSVSRS*GQSAWVSADEKAIS
Trigger: TGAAATGGCCTTCTCATCCGCTGAGACCCATGCGGACTGCCCGCAGCTCCTGGATACAGAGGACATGGTGCGGCTTCGAGAGCCAGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp CTGCCTGGCGTCTTTCAAGGGCTGCCAGGCTGCCAGGACGTGAGCTaGTCTGGTCCTCTCGGTCGAAGATACTGCCCATCTTTTTGGACG +
Preference number: 5 (lower is better)
Translates to: LPGVFQGLPGCQDVS*SGPLGRRYCPSFWT
Trigger: CGTCCAAAAAGATGGGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGACGCCAGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp CACCGGCACTCCGAAGCAGTGTGGTCAACTCCTCGACATCATTCATaGACTCCAGTCTCCCTGCCAATCGTGCGAGGGCGGCCTGCTGTT +
Preference number: 5 (lower is better)
Translates to: HRHSEAVWSTPRHHS*TPVSLPIVRGRPAV
Trigger: AACAGCAGGCCGCCCTCGCACGATTGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGGAGTTGACCACACTGCTTCGGAGTGCCGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGGTGGTTGTGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: VARHSCRANAAHGAAGGCVWSSI*SRTPSS
Trigger: GGACGAAGGAGTCCTGGACAAGATGCTGGACCAGAC...ACAACCACCTGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGATACTGCCCATCTTTTaGGACGAGGACGAGGAAGAG +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPILPIF*DEDEEE
Trigger: CTCTTCCTCGTCCTCGTCCAAAAAGATGGGCAGTAT...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGATACTGCCCATCTTTTaGGACGAGGACGAGGAAGAG +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRILPIF*DEDEEE
Trigger: CTCTTCCTCGTCCTCGTCCAAAAAGATGGGCAGTAT...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTGCCGCGCATTCTCAATCATGGCCTaGCGTGCTTGGGATGCTGAA +
Preference number: 5 (lower is better)
Translates to: AARSAGGVSRVARHSCRAFSIMA*RAWDAE
Trigger: TTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAA...TGCGCGGCAAGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTTCTCAATCATGGCCTaGCGTGCTTGGGATGCTGAA +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRFSIMA*RAWDAE
Trigger: TTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAA...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTTCTCAATCATGGCCTaGCGTGCTTGGGATGCTGAA +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPFSIMA*RAWDAE
Trigger: TTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGGGGACAGCAGCCCGCAGCGCAGGCGGTGTGAGCAGAGTGGCTAGACATTCTTTGATGCTATTGGCGTaGGGGACTCCGAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: VGTAARSAGGVSRVARHSLMLLA*GTPKLV
Trigger: TACCAGCTTCGGAGTCCCCAACGCCAATAGCATCAA...AGAATGTCTAGCCACTCTGCTCACACCGCCTGCGCTGCGGGCTGCTGTCCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCATGGTGTCCTCTGGGGTaGGGGTTGGCTCGAGTACTT +
Preference number: 5 (lower is better)
Translates to: VSRVARHSCRANAAHGAAWCPLG*GLARVL
Trigger: AAGTACTCGAGCCAACCCCAACCCCAGAGGACACCA...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GAGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGTCTGCTCTCTTAGTGTaGGAGAAGCCTCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: ERCFDRRGSSGQAHWEVPSALLV*EKPLME
Trigger: CTCCATCAGAGGCTTCTCCAACACTAAGAGAGCAGA...CGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp AGAGGTGTTTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGAGTTCTCTCTGCTTCTaGTGGGAGGAAGTGTCACTG +
Preference number: 5 (lower is better)
Translates to: RGVLTDGAAVGRRTGRCRSSLCF*WEEVSL
Trigger: CAGTGACACTTCCTCCCACAAGAAGCAGAGAGAACT...CCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAAACACCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 90 bp TCGGCTGCCTGGGTCACCGCTGACCGGCCTGCTTCAGCCACCGTCTaGAGTTCTTGTAATGCCTGGCTCAACTGTTCTTCAAAGGCTGCA +
Preference number: 5 (lower is better)
Translates to: SAAWVTADRPASATV*SSCNAWLNCSSKAA
Trigger: TGCAGCCTTTGAAGAACAGTTGAGCCAGGCATTACAAGAACTGCAGACGGTGGCTGAAGCAGGCCGGTCAGCGGTGACCCAGGCAGCCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 90 bp GATGGTGTTCTTGCCCCCACTGCTGGTGCTGAGAAGGGTTGGGGGTaGCCGCAATCCCAAAGTCAATTCTGCTCTCTGGTTGCCTGTGGG +
Preference number: 5 (lower is better)
Translates to: DGVLAPTAGAEKGWG*PQSQSQFCSLVACG
Trigger: CCCACAGGCAACCAGAGAGCAGAATTGACTTTGGGATTGCGGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGGGCAAGAACACCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp TGGCGTCTTTCAAGGGCTGCCAGGCTGCCAGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATACTGCCCATCTTTTTGGACGAGGAC +
Preference number: 5 (lower is better)
Translates to: WRLSRAARLPGRELV*SSRSKILPIFLDED
Trigger: GTCCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGACGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp GTGGGTGATGGTGTTCTTGCCCCCACTGCTGGTGCTGAGAAGGGTTaGGGGTGCCCGCAATCCCAAAGTCAATTCTGCTCTCTGGTTGCC +
Preference number: 5 (lower is better)
Translates to: VGDGVLAPTAGAEKG*GCPQSQSQFCSLVA
Trigger: GGCAACCAGAGAGCAGAATTGACTTTGGGATTGCGGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGGGCAAGAACACCATCACCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp GTGAGCAGAGTGGCTAGACATTCTTGCCGCGCAAACGCAGCTCATGGCGCCGCAGTCCTGCAAGTGAGGTaGGCTCTCGATTTGGGGTTG +
Preference number: 5 (lower is better)
Translates to: VSRVARHSCRANAAHGAAVLQVR*ALDLGL
Trigger: CAACCCCAAATCGAGAGCCAACCTCACTTGCAGGAC...TGCGGCGCCATGAGCTGCGTTTGCGCGGCAAGAATGTCTAGCCACTCTGCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TTTGACAGACGGGGCAGCAGTGGGCAGGCGCACTGGGAGGTGCCGGTGCTGGGGATCAGATGTGAACTTTaGGACTCTGTCTCTCACAGA +
Preference number: 5 (lower is better)
Translates to: FDRRGSSGQAHWEVPVLGIRCEL*DSVSHR
Trigger: TCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGAT...CCCCAGCACCGGCACCTCCCAGTGCGCCTGCCCACTGCTGCCCCGTCTGTCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGAATTCTGCTCTCTGGTaGCCTGTGGGCAGCAGCACC +
Preference number: 5 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGNSALW*PVGSST
Trigger: GGTGCTGCTGCCCACAGGCAACCAGAGAGCAGAATT...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS TCA 90 bp CTTCTCTGCCTGGCGTCTTTCAAGGGCTGCCAGGCTGCCAGGACGTaGGCTGGTCTGGTCCTCTCGGTCGAAGATACTGCCCATCTTTTT +
Preference number: 5 (lower is better)
Translates to: LLCLASFKGCQAART*AGLVLSVEDTAHLF
Trigger: AAAAAGATGGGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGACGCCAGGCAGAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 90 bp ACTCTTTCTTCTTCTCTGCCTGGCGTCTTTCAAGGGCTGCCAGGCTaGCAGGACGTGAGCTGGTCTGGTCCTCTCGGTCGAAGATACTGC +
Preference number: 5 (lower is better)
Translates to: TLSSSLPGVFQGLPG*QDVSWSGPLGRRYC
Trigger: GCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 90 bp CAGTGTGGTCAACTCCTCGACATCATTCATGGACTCCAGTCTCCCTaGCAATCGTGCGAGGGCGGCCTGCTGTTCAGCTTCTCGCTGTTG +
Preference number: 5 (lower is better)
Translates to: QCGQLLDIIHGLQSP*QSCEGGLLFSFSLL
Trigger: CAACAGCGAGAAGCTGAACAGCAGGCCGCCCTCGCACGATTGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGGAGTTGACCACACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CCA 90 bp GTAGCCAGTTCTCCTTGTTGTCTTGCCGCTCAGCACGGAAACGTTTaGACGCCAGAGCCTCCTCTTCTCGTTCCAGCTCCTGTCGCTGCA +
Preference number: 5 (lower is better)
Translates to: VASSPCCLAAQHGNV*TPEPPLLVPAPVAA
Trigger: TGCAGCGACAGGAGCTGGAACGAGAAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAACTGGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CCA 90 bp ACGAGGACGAGGAAGAGGAAGAGGAAAAACTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGCTGCTGCTGCCATTCTCCAAGCGCC +
Preference number: 5 (lower is better)
Translates to: TRTRKRKRKNSWFGP*WWWCCCCCCHSPSA
Trigger: GGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCACCACCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTTCCTCTTCCTCGTCCTCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 90 bp GGGGTGGGCCATCCTGGAGCCTGGCAACCACGGGAGAATCAGATGTaGACTTTTGGACTCTGTCTCTCACAGAGCCAACTCGACGGAACT +
Preference number: 5 (lower is better)
Translates to: GVGHPGAWQPRENQM*TFGLCLSQSQLDGT
Trigger: AGTTCCGTCGAGTTGGCTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGATTCTCCCGTGGTTGCCAGGCTCCAGGATGGCCCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 90 bp GCTGCTGCTGCTGCCATCTCTCTTTCTTTGTCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCTCTCCTCAAAGTTCGTAGTCTGGTC +
Preference number: 5 (lower is better)
Translates to: AAAAAISLSLSELTQ*SPDELPLLKVRSLV
Trigger: GACCAGACTACGAACTTTGAGGAGAGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGACAAAGAAAGAGAGATGGCAGCAGCAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS-3UTR CAA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGTCCAGCAACATCTGCTaGATGCTATTGGCGTTGGGG +
Preference number: 5 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGSSNIC*MLLALG
Trigger: CCCCAACGCCAATAGCATCAAGCAGATGTTGCTGGA...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp TCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGGTGTAGCCAGTTCTCCTaGTTGTCTTGCCGCTCAGCA +
Preference number: 5 (lower is better)
Translates to: SSCPPPPPRVHSPPASVGCSQFS*LSCRSA
Trigger: TGCTGAGCGGCAAGACAACAAGGAGAACTGGCTACA...CCCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS CCA 90 bp TTGGGCAGACTCTGTGCCTTCATTAACTCTTTCTTCTTCTCTGCCTaGCGTCTTTCAAGGGCTGCCAGGCTGCCAGGACGTGAGCTGGTC +
Preference number: 5 (lower is better)
Translates to: LGRLCAFINSFFFSA*RLSRAARLPGRELV
Trigger: GACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGACGCCAGGCAGAGAAGAAGAAAGAGTTAATGAAGGCACAGAGTCTGCCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGTTGATGCTATTGGCGTaGGGGACTCCGAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGLMLLA*GTPKLV
Trigger: TACCAGCTTCGGAGTCCCCAACGCCAATAGCATCAA...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS-3UTR CAA 90 bp ATCATCATGTCCTCCACCTCCACCAAGGGTACACAGTCCACCAGCATCCGTGGGATCTGCTTGATGCTATaGGCGTTGGGGACTCCGAAG +
Preference number: 5 (lower is better)
Translates to: IIMSSTSTKGTQSTSIRGICLML*ALGTPK
Trigger: CTTCGGAGTCCCCAACGCCAATAGCATCAAGCAGAT...CCCACGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000170588.8
CDS GCA 90 bp TTCCTTGTCCCTCTGGTCTCTCTTTCTTTGTCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCTCTCCTCAAAGTTCGTAGTCTGGTC +
Preference number: 5 (lower is better)
Translates to: FLVPLVSLSLSELTQ*SPDELPLLKVRSLV
Trigger: GACCAGACTACGAACTTTGAGGAGAGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAGAGGGACAAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp TGCCAGGACCACCTGCAGAGCCTTCTTTCTCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATGCTGAAGTCTTGGGCAGACTCTGTG +
Preference number: 5 (lower is better)
Translates to: CQDHLQSLLSLASQS*PCVLGMLKSWADSV
Trigger: CACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGAAGGCTCTGCAGGTGGTCCTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 90 bp GACCACCTGCAGAGCCTTCTTTCTCTAGCTTCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAGTCTTGGGCAGACTCTGTGCCTTCA +
Preference number: 5 (lower is better)
Translates to: DHLQSLLSLASQSWP*VLGMLKSWADSVPS
Trigger: TGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGAAGGCTCTGCAGGTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp ACGAGGAAGAGGAAGAGGAAAAACTCTTGGTTTGGACCGTGGTGGTaGTGGTGCTGCTGCTGCTGCTGCCATCTCTCTTTCTTTGTCGGA +
Preference number: 5 (lower is better)
Translates to: TRKRKRKNSWFGPWW*WCCCCCCHLSFFVG
Trigger: TCCGACAAAGAAAGAGAGATGGCAGCAGCAGCAGCAGCACCACCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTTCCTCTTCCTCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS CCA 90 bp ACGAGGACGAGGAAGAGGAAGAGGAAAAACTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGCTGCTGCTGCCATCTCTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: TRTRKRKRKNSWFGP*WWWCCCCCCHLSFF
Trigger: AAAGAAAGAGAGATGGCAGCAGCAGCAGCAGCACCACCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTTCCTCTTCCTCGTCCTCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS CCA 90 bp GCAGAGCCTTCTTTCTCTAGCTTCTCAATCATGGCCTTGCGTGCTTaGGATGCTGAAGTCTTGGGCAGACTCTGTGCCTTCATTAACTCT +
Preference number: 5 (lower is better)
Translates to: AEPSFSSFSIMALRA*DAEVLGRLCAFINS
Trigger: AGAGTTAATGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGAAGGCTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 90 bp CTAGCTTCTCAATCATGGCCTTGCGTGCTTGGGATGCTGAAGTCTTaGGCAGACTCTGTGCCTTCATTAACTCTTTCTTCTTCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: LASQSWPCVLGMLKS*ADSVPSLTLSSSLP
Trigger: AGGCAGAGAAGAAGAAAGAGTTAATGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp TCAGCCGCCCGCTGGCTGTGCCTGGTGGTGGTCTCCGTGGCCACATaGCTTCGGCTCTCGCCCGGCCGGGCCCGTGCCTCCCGTAGCCTC +
Preference number: 6 (lower is better)
Translates to: SAARWLCLVVVSVAT*LRLSPGRARASRSL
Trigger: GAGGCTACGGGAGGCACGGGCCCGGCCGGGCGAGAGCCGAAGCAATGTGGCCACGGAGACCACCACCAGGCACAGCCAGCGGGCGGCTGA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp CAGTGCATCGAGCCGCCGGCTCAGAGCTGCCGTCTCTaGTCGAAGCTCTTCGGCTGCCTGAGCCACTGGCTC +
Preference number: 6 (lower is better)
Translates to: QCIEPPAQSCRL*SKLFGCLSHWL
Trigger: GAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTGAGCCGGCGGCTCGATGCACTG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 72 bp CTGCCTGGTCAGTGCATCGAGCCGCCGGCTCAGAGCTaGCGTCTCTGCTCGAAGCTCTTCGGCTGCCTGAGC +
Preference number: 6 (lower is better)
Translates to: LPGQCIEPPAQS*RLCSKLFGCLS
Trigger: GCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTGAGCCGGCGGCTCGATGCACTGACCAGGCAG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 72 bp GTGCCGACAGTAGAGCCATCAGCCGCCCGCTGGCTGTaGCTGGTGGTGGTCTCCGTGGCCACATTGCTTCGG +
Preference number: 6 (lower is better)
Translates to: VPTVEPSAARWL*LVVVSVATLLR
Trigger: CCGAAGCAATGTGGCCACGGAGACCACCACCAGGCACAGCCAGCGGGCGGCTGATGGCTCTACTGTCGGCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp ACTGGCTCTACAGTGGCCAGAGCTGCATCGGCTGCCTaGGTCACCGCTGACCGGCCTGCTTCAGCCACCGTC +
Preference number: 6 (lower is better)
Translates to: TGSTVARAASAA*VTADRPASATV
Trigger: GACGGTGGCTGAAGCAGGCCGGTCAGCGGTGACCCAGGCAGCCGATGCAGCTCTGGCCACTGTAGAGCCAGT
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS TCA 72 bp AGTGGCCAGAGCTGCATCGGCTGCCTGGGTCACCGCTaGCCGGCCTGCTTCAGCCACCGTCTGCAGTTCTTG +
Preference number: 6 (lower is better)
Translates to: SGQSCIGCLGHR*PACFSHRLQFL
Trigger: CAAGAACTGCAGACGGTGGCTGAAGCAGGCCGGTCAGCGGTGACCCAGGCAGCCGATGCAGCTCTGGCCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS TCA 72 bp TCGTTCCAGCTCCTGTCGCTGCAGCTCCCGGATGGCTaGGCGGATCCGCCGCCGTTCTGCCAGATCTGCAGT +
Preference number: 6 (lower is better)
Translates to: SFQLLSLQLPDG*ADPPPFCQICS
Trigger: ACTGCAGATCTGGCAGAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGCGACAGGAGCTGGAACGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CCA 72 bp CGTCAGCTCCTCTGCACTCAGGGGACTCCGCCCCTCTaGGCCTTTGTCCACTCGAGCCTGCTCTGCGCCATT +
Preference number: 6 (lower is better)
Translates to: RQLLCTQGTPPL*AFVHSSLLCAI
Trigger: AATGGCGCAGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp CTTCTCGTTCCAGCTCCTGTCGCTGCAGCTCCCGGATaGCTGAGCGGATCCGCCGCCGTTCTGCCAGATCTG +
Preference number: 6 (lower is better)
Translates to: LLVPAPVAAAPG*LSGSAAVLPDL
Trigger: CAGATCTGGCAGAACGGCGGCGGATCCGCTCAGCCATCCGGGAGCTGCAGCGACAGGAGCTGGAACGAGAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CAA 90 bp GCCGTCAGCTCCTCTGCACTCAGGGGACTCCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCTGCGCCATTAGCTGCTTCCACTGTG +
Preference number: 6 (lower is better)
Translates to: AVSSSALRGLRPSGP*STRACSAPLAASTV
Trigger: CACAGTGGAAGCAGCTAATGGCGCAGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp GCTCAGAGCTGCCGTCTCTGCTCGAAGCTCTTCGGCTaGCTGAGCCACTGGCTCTACAGTGGCCAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: AQSCRLCSKLFG*LSHWLYSGQSC
Trigger: GCAGCTCTGGCCACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCTGAGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 72 bp AGTGGAACACCCAGCCGTAAGCTCAGCACCTCCACCTaGCTGGTCAGTGCATCGAGCCGCCGGCTCAGAGCT +
Preference number: 6 (lower is better)
Translates to: SGTPSRKLSTST*LVSASSRRLRA
Trigger: AGCTCTGAGCCGGCGGCTCGATGCACTGACCAGGCAGGTGGAGGTGCTGAGCTTACGGCTGGGTGTTCCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS GCA 72 bp CAGGACTCCTTCGTCCTCAATGGCCGTCAGCTCCTCTaGACTCAGGGGACTCCGCCCCTCTGGGCCTTTGTC +
Preference number: 6 (lower is better)
Translates to: QDSFVLNGRQLL*TQGTPPLWAFV
Trigger: GACAAAGGCCCAGAGGGGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAGTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp CTCTGGCTCTGGCACCTTACCAGGGTCCAATGTGTGTaGTGCCTGCCTCCTGCTGTCCTCTCGGGGGCCACT +
Preference number: 6 (lower is better)
Translates to: LWLWHLTRVQCV*CLPPAVLSGAT
Trigger: AGTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCACACACATTGGACCCTGGTAAGGTGCCAGAGCCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp CGTCTCTGCTCGAAGCTCTTCGGCTGCCTGAGCCACTaGCTCTACAGTGGCCAGAGCTGCATCGGCTGCCTG +
Preference number: 6 (lower is better)
Translates to: RLCSKLFGCLSH*LYSGQSCIGCL
Trigger: CAGGCAGCCGATGCAGCTCTGGCCACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS CCA 72 bp CTGCCTGCCTCCTGCTGTCCTCTCGGGGGCCACTACTaGGAAGTCTACTGCACAGTCTCCCAGCCAAGGTGG +
Preference number: 6 (lower is better)
Translates to: LPASCCPLGGHY*EVYCTVSQPRW
Trigger: CCACCTTGGCTGGGAGACTGTGCAGTAGACTTCCCAGTAGTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp GTAACTGTGCCGACAGTAGAGCCATCAGCCGCCCGCTaGCTGTGCCTGGTGGTGGTCTCCGTGGCCACATTG +
Preference number: 6 (lower is better)
Translates to: VTVPTVEPSAAR*LCLVVVSVATL
Trigger: CAATGTGGCCACGGAGACCACCACCAGGCACAGCCAGCGGGCGGCTGATGGCTCTACTGTCGGCACAGTTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 72 bp TCCTCTGCACTCAGGGGACTCCGCCCCTCTGGGCCTTaGTCCACTCGAGCCTGCTCTGCGCCATTAGCTGCT +
Preference number: 6 (lower is better)
Translates to: SSALRGLRPSGP*STRACSAPLAA
Trigger: AGCAGCTAATGGCGCAGAGCAGGCTCGAGTGGACAAAGGCCCAGAGGGGCGGAGTCCCCTGAGTGCAGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 72 bp AGAGCTGCCGTCTCTGCTCGAAGCTCTTCGGCTGCCTaGGCCACTGGCTCTACAGTGGCCAGAGCTGCATCG +
Preference number: 6 (lower is better)
Translates to: RAAVSARSSSAA*ATGSTVARAAS
Trigger: CGATGCAGCTCTGGCCACTGTAGAGCCAGTGGCTCAGGCAGCCGAAGAGCTTCGAGCAGAGACGGCAGCTCT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS TCA 72 bp CTGGCGTCTTTCAAGGGCTGCCAGGCTGCCAGGACGTaGGCTGGTCTGGTCCTCTCGGTCGAAGATACTGCC +
Preference number: 6 (lower is better)
Translates to: LASFKGCQAART*AGLVLSVEDTA
Trigger: GGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGACGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 72 bp CGGTTACCAGGGGAGGCATGGCTGAAGGTAGTGACGTaGGTGACACTGCCCAGTCGGGTCACAGTCCCAGGG +
Preference number: 6 (lower is better)
Translates to: RLPGEAWLKVVT*VTLPSRVTVPG
Trigger: CCCTGGGACTGTGACCCGACTGGGCAGTGTCACTCACGTCACTACCTTCAGCCATGCCTCCCCTGGTAACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp TCTGGCACCTTACCAGGGTCCAATGTGTGTGCTGCCTaGCTCCTGCTGTCCTCTCGGGGGCCACTACTGGGA +
Preference number: 6 (lower is better)
Translates to: SGTLPGSNVCAA*LLLSSRGPLLG
Trigger: TCCCAGTAGTGGCCCCCGAGAGGACAGCAGGAGGCAGGCAGCACACACATTGGACCCTGGTAAGGTGCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp GGTCCAGCATCTTGTCCAGGACTCCTTCGTCCTCAATaGCCGTCAGCTCCTCTGCACTCAGGGGACTCCGCC +
Preference number: 6 (lower is better)
Translates to: GPASCPGLLRPQ*PSAPLHSGDSA
Trigger: GGCGGAGTCCCCTGAGTGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAGTCCTGGACAAGATGCTGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp AGTCGGGTCACAGTCCCAGGGTTGCTGATGTGGGTGATGGTGTTCTaGCCCCCACTGCTGGTGCTGAGAAGGGTTGGGGGTGCCCGCAAT +
Preference number: 6 (lower is better)
Translates to: SRVTVPGLLMWVMVF*PPLLVLRRVGGARN
Trigger: ATTGCGGGCACCCCCAACCCTTCTCAGCACCAGCAGTGGGGGCAAGAACACCATCACCCACATCAGCAACCCTGGGACTGTGACCCGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 72 bp CACAGTCTCCCAGCCAAGGTGGCAGCCTTAATCTCCTaGGCTCGCACTCGGCGGATGGCAGCTCTGATCAGC +
Preference number: 6 (lower is better)
Translates to: HSLPAKVAALIS*ARTRRMAALIS
Trigger: GCTGATCAGAGCTGCCATCCGCCGAGTGCGAGCTCAGGAGATTAAGGCTGCCACCTTGGCTGGGAGACTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS TCA 72 bp TGCTGCTGCTGCTGCTGCCATTCTCCAAGCGCCTCATaGAACTGGACTCCACTGTGGTGGTGCGGGCCGTCT +
Preference number: 6 (lower is better)
Translates to: CCCCCCHSPSAS*NWTPLWWCGPS
Trigger: AGACGGCCCGCACCACCACAGTGGAGTCCAGTTTCATGAGGCGCTTGGAGAATGGCAGCAGCAGCAGCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp TCTCGAAGCCGCACCATGTCCTCTGTATCCAGGAGCTaGGGGCAGTCCGCATGGGTCTCAGCGGATGAGAAG +
Preference number: 6 (lower is better)
Translates to: SRSRTMSSVSRS*GQSAWVSADEK
Trigger: CTTCTCATCCGCTGAGACCCATGCGGACTGCCCGCAGCTCCTGGATACAGAGGACATGGTGCGGCTTCGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 72 bp CGTGCGAGGGCGGCCTGCTGTTCAGCTTCTCGCTGTTaGGAGTGTAGCCAGTTCTCCTTGTTGTCTTGCCGC +
Preference number: 6 (lower is better)
Translates to: RARAACCSASRC*ECSQFSLLSCR
Trigger: GCGGCAAGACAACAAGGAGAACTGGCTACACTCTCAACAGCGAGAAGCTGAACAGCAGGCCGCCCTCGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS TCA 72 bp AGAGCCAACTCGACGGAACTGGGACGGTCCTGCAAGTaGGGTTGGCTCTCGATTTGGGGTTGGTTGTCGGGG +
Preference number: 6 (lower is better)
Translates to: RANSTELGRSCK*GWLSIWGWLSG
Trigger: CCCCGACAACCAACCCCAAATCGAGAGCCAACCTCACTTGCAGGACCGTCCCAGTTCCGTCGAGTTGGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp AACTGGACTCCACTGTGGTGGTGCGGGCCGTCTGAGTaGCATCATTGGAGTGAACGAGGCGCTCGGTTTTGG +
Preference number: 6 (lower is better)
Translates to: NWTPLWWCGPSE*HHWSERGARFW
Trigger: CCAAAACCGAGCGCCTCGTTCACTCCAATGATGGCACTCAGACGGCCCGCACCACCACAGTGGAGTCCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp GTCTTTCAAGGGCTGCCAGGCTGCCAGGACGTGAGCTaGTCTGGTCCTCTCGGTCGAAGATACTGCCCATCT +
Preference number: 6 (lower is better)
Translates to: VFQGLPGCQDVS*SGPLGRRYCPS
Trigger: AGATGGGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGAAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp TGTAGCCAGTTCTCCTTGTTGTCTTGCCGCTCAGCACGGAAACGTTaGGACGCCAGAGCCTCCTCTTCTCGTTCCAGCTCCTGTCGCTGC +
Preference number: 6 (lower is better)
Translates to: CSQFSLLSCRSARKR*DARASSSRSSSCRC
Trigger: GCAGCGACAGGAGCTGGAACGAGAAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAACTGGCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS GCA 72 bp GACATCATTCATGGACTCCAGTCTCCCTGCCAATCGTaGGAGGGCGGCCTGCTGTTCAGCTTCTCGCTGTTG +
Preference number: 6 (lower is better)
Translates to: DIIHGLQSPCQS*EGGLLFSFSLL
Trigger: CAACAGCGAGAAGCTGAACAGCAGGCCGCCCTCGCACGATTGGCAGGGAGACTGGAGTCCATGAATGATGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS GCA 72 bp CAACTCCTCGACATCATTCATGGACTCCAGTCTCCCTaGCAATCGTGCGAGGGCGGCCTGCTGTTCAGCTTC +
Preference number: 6 (lower is better)
Translates to: QLLDIIHGLQSP*QSCEGGLLFSF
Trigger: GAAGCTGAACAGCAGGCCGCCCTCGCACGATTGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGGAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CCA 72 bp TCAAGGGCTGCCAGGCTGCCAGGACGTGAGCTGGTCTaGTCCTCTCGGTCGAAGATACTGCCCATCTTTTTG +
Preference number: 6 (lower is better)
Translates to: SRAARLPGRELV*SSRSKILPIFL
Trigger: CAAAAAGATGGGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTCCTGGCAGCCTGGCAGCCCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp TCCGAAGCAGTGTGGTCAACTCCTCGACATCATTCATaGACTCCAGTCTCCCTGCCAATCGTGCGAGGGCGG +
Preference number: 6 (lower is better)
Translates to: SEAVWSTPRHHS*TPVSLPIVRGR
Trigger: CCGCCCTCGCACGATTGGCAGGGAGACTGGAGTCCATGAATGATGTCGAGGAGTTGACCACACTGCTTCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CCA 72 bp CACTGTGGTCACATCCTGGCTGGTGTCCTCTGGGGTTaGGGTTGGCTCGAGTACTTCTGTCTGCTGTTCCTG +
Preference number: 6 (lower is better)
Translates to: HCGHILAGVLWG*GWLEYFCLLFL
Trigger: CAGGAACAGCAGACAGAAGTACTCGAGCCAACCCCAACCCCAGAGGACACCAGCCAGGATGTGACCACAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 72 bp CGGGTCTTGGCTCGGCACCAGTCCAGCAACATCTGCTaGATGCTATTGGCGTTGGGGACTCCGAAGCTGGTA +
Preference number: 6 (lower is better)
Translates to: RVLARHQSSNIC*MLLALGTPKLV
Trigger: TACCAGCTTCGGAGTCCCCAACGCCAATAGCATCAAGCAGATGTTGCTGGACTGGTGCCGAGCCAAGACCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp GCCATCCTGGAGCCTGGCAACCACGGGAGAATCAGATGTGAACTTTaGGACTCTGTCTCTCACAGAGCCAACTCGACGGAACTGGGACGG +
Preference number: 6 (lower is better)
Translates to: AILEPGNHGRIRCEL*DSVSHRANSTELGR
Trigger: CCGTCCCAGTTCCGTCGAGTTGGCTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGATTCTCCCGTGGTTGCCAGGCTCCAGGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp TGGGTCACCGCTGACCGGCCTGCTTCAGCCACCGTCTaGAGTTCTTGTAATGCCTGGCTCAACTGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: WVTADRPASATV*SSCNAWLNCSS
Trigger: TGAAGAACAGTTGAGCCAGGCATTACAAGAACTGCAGACGGTGGCTGAAGCAGGCCGGTCAGCGGTGACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS CCA 72 bp TCTCCTTGTTGTCTTGCCGCTCAGCACGGAAACGTTTaGACGCCAGAGCCTCCTCTTCTCGTTCCAGCTCCT +
Preference number: 6 (lower is better)
Translates to: SPCCLAAQHGNV*TPEPPLLVPAP
Trigger: AGGAGCTGGAACGAGAAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CAA 72 bp TTCTCCTTGTTGTCTTGCCGCTCAGCACGGAAACGTTaGGACGCCAGAGCCTCCTCTTCTCGTTCCAGCTCC +
Preference number: 6 (lower is better)
Translates to: FSLLSCRSARKR*DARASSSRSSS
Trigger: GGAGCTGGAACGAGAAGAGGAGGCTCTGGCGTCCAAACGTTTCCGTGCTGAGCGGCAAGACAACAAGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CAA 72 bp TCACTGTGGTCACATCCTGGCTGGTGTCCTCTGGGGTaGGGGTTGGCTCGAGTACTTCTGTCTGCTGTTCCT +
Preference number: 6 (lower is better)
Translates to: SLWSHPGWCPLG*GLARVLLSAVP
Trigger: AGGAACAGCAGACAGAAGTACTCGAGCCAACCCCAACCCCAGAGGACACCAGCCAGGATGTGACCACAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 72 bp CCGTTCTCGTTCCTTGTCCCTCTGGTCTCTCTTTCTTaGTCGGAGCTCACGCAGTGCAGCCCGGATGAGCTT +
Preference number: 6 (lower is better)
Translates to: PFSFLVPLVSLS*SELTQCSPDEL
Trigger: AAGCTCATCCGGGCTGCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAGAGGGACAAGGAACGAGAACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp CGGATGAGCTTCCTCTCCTCAAAGTTCGTAGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCCTCAATGGCCGTCAGCTCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: RMSFLSSKFVVWSSI*SRTPSSSMAVSSSA
Trigger: TGCAGAGGAGCTGACGGCCATTGAGGACGAAGGAGTCCTGGACAAGATGCTGGACCAGACTACGAACTTTGAGGAGAGGAAGCTCATCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp GACGTGAGCTGGTCTGGTCCTCTCGGTCGAAGATACTaGCCATCTTTTTGGACGAGGACGAGGAAGAGGAAG +
Preference number: 6 (lower is better)
Translates to: DVSWSGPLGRRY*PSFWTRTRKRK
Trigger: CTTCCTCTTCCTCGTCCTCGTCCAAAAAGATGGGCAGTATCTTCGACCGAGAGGACCAGACCAGCTCACGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp CCTCTGGTCTCTCTTTCTTTGTCGGAGCTCACGCAGTaGAGCCCGGATGAGCTTCCTCTCCTCAAAGTTCGT +
Preference number: 6 (lower is better)
Translates to: PLVSLSLSELTQ*SPDELPLLKVR
Trigger: ACGAACTTTGAGGAGAGGAAGCTCATCCGGGCTGCACTGCGTGAGCTCCGACAAAGAAAGAGAGACCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp AGGAAGAGGAAGAGGAAAAACTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGCTGCTGCTGCCATCTC +
Preference number: 6 (lower is better)
Translates to: RKRKRKNSWFGP*WWWCCCCCCHL
Trigger: GAGATGGCAGCAGCAGCAGCAGCACCACCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTTCCTCTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020718.10
CDS CCA 72 bp ATGTCCTCTGTATCCAGGAGCTGCGGGCAGTCCGCATaGGTCTCAGCGGATGAGAAGGCCATTTCAAAGTTC +
Preference number: 6 (lower is better)
Translates to: MSSVSRSCGQSA*VSADEKAISKF
Trigger: GAACTTTGAAATGGCCTTCTCATCCGCTGAGACCCATGCGGACTGCCCGCAGCTCCTGGATACAGAGGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp GGACCACCTGCAGAGCCTTCTTTCTCTAGCTTCTCAATCATGGCCTaGCGTGCTTGGGATGCTGAAGTCTTGGGCAGACTCTGTGCCTTC +
Preference number: 6 (lower is better)
Translates to: GPPAEPSFSSFSIMA*RAWDAEVLGRLCAF
Trigger: GAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGAAGGCTCTGCAGGTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp TGCGCTCCTCATATTCACCGGCACTCCGAAGCAGTGTaGTCAACTCCTCGACATCATTCATGGACTCCAGTC +
Preference number: 6 (lower is better)
Translates to: CAPHIHRHSEAV*STPRHHSWTPV
Trigger: GACTGGAGTCCATGAATGATGTCGAGGAGTTGACCACACTGCTTCGGAGTGCCGGTGAATATGAGGAGCGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000136243.2
ENSMUST00000156201.8
ENSMUST00000170588.8
CDS CCA 72 bp AGGAAGAGGAAGAGGAAAAACTCTTGGTTTGGACCGTaGTGGTGGTGGTGCTGCTGCTGCTGCTGCCATTCT +
Preference number: 6 (lower is better)
Translates to: RKRKRKNSWFGP*WWWCCCCCCHS
Trigger: AGAATGGCAGCAGCAGCAGCAGCACCACCACCACCACGGTCCAAACCAAGAGTTTTTCCTCTTCCTCTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 72 bp TTCCTCTCCTCAAAGTTCGTAGTCTGGTCCAGCATCTaGTCCAGGACTCCTTCGTCCTCAATGGCCGTCAGC +
Preference number: 6 (lower is better)
Translates to: FLSSKFVVWSSI*SRTPSSSMAVS
Trigger: GCTGACGGCCATTGAGGACGAAGGAGTCCTGGACAAGATGCTGGACCAGACTACGAACTTTGAGGAGAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 72 bp CATCCTGGAGCCTGGCAACCACGGGAGAATCAGATGTaGACTTTTGGACTCTGTCTCTCACAGAGCCAACTC +
Preference number: 6 (lower is better)
Translates to: HPGAWQPRENQM*TFGLCLSQSQL
Trigger: GAGTTGGCTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGATTCTCCCGTGGTTGCCAGGCTCCAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp CACCTGCAGAGCCTTCTTTCTCTAGCTTCTCAATCATaGCCTTGCGTGCTTGGGATGCTGAAGTCTTGGGCA +
Preference number: 6 (lower is better)
Translates to: HLQSLLSLASQS*PCVLGMLKSWA
Trigger: TGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGAAGGCTCTGCAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 72 bp GAGCCTGGCAACCACGGGAGAATCAGATGTGAACTTTaGGACTCTGTCTCTCACAGAGCCAACTCGACGGAA +
Preference number: 6 (lower is better)
Translates to: EPGNHGRIRCEL*DSVSHRANSTE
Trigger: TTCCGTCGAGTTGGCTCTGTGAGAGACAGAGTCCAAAAGTTCACATCTGATTCTCCCGTGGTTGCCAGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp GAACGTTGGCAGGATTTCGTTTCAGACGGGTCTGCTCTCTTAGTGTaGGAGAAGCCTCTGATGGAGTCCAAGGTATCTGAGGGCTCTGTG +
Preference number: 6 (lower is better)
Translates to: ERWQDFVSDGSALLV*EKPLMESKVSEGSV
Trigger: CACAGAGCCCTCAGATACCTTGGACTCCATCAGAGGCTTCTCCAACACTAAGAGAGCAGACCCGTCTGAAACGAAATCCTGCCAACGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS TCA 72 bp AGGTTGGCTCTCGATTTGGGGTTGGTTGTCGGGGACTaGGCACAGATAGTGAACGTTGGCAGGATTTCGTTT +
Preference number: 6 (lower is better)
Translates to: RLALDLGLVVGD*AQIVNVGRISF
Trigger: AAACGAAATCCTGCCAACGTTCACTATCTGTGCTCAGTCCCCGACAACCAACCCCAAATCGAGAGCCAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS GCA 72 bp CAGAGCCTTCTTTCTCTAGCTTCTCAATCATGGCCTTaGGTGCTTGGGATGCTGAAGTCTTGGGCAGACTCT +
Preference number: 6 (lower is better)
Translates to: QSLLSLASQSWP*VLGMLKSWADS
Trigger: AGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGAAGGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp TCTTTCTCTAGCTTCTCAATCATGGCCTTGCGTGCTTaGGATGCTGAAGTCTTGGGCAGACTCTGTGCCTTC +
Preference number: 6 (lower is better)
Translates to: SFSSFSIMALRA*DAEVLGRLCAF
Trigger: GAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGAGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CAA 90 bp TCTAGCTTCTCAATCATGGCCTTGCGTGCTTGGGATGCTGAAGTCTaGGGCAGACTCTGTGCCTTCATTAACTCTTTCTTCTTCTCTGCC +
Preference number: 6 (lower is better)
Translates to: SSFSIMALRAWDAEV*GRLCAFINSFFFSA
Trigger: GGCAGAGAAGAAGAAAGAGTTAATGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8
CDS CCA 72 bp CAATCATGGCCTTGCGTGCTTGGGATGCTGAAGTCTTaGGCAGACTCTGTGCCTTCATTAACTCTTTCTTCT +
Preference number: 6 (lower is better)
Translates to: QSWPCVLGMLKS*ADSVPSLTLSS
Trigger: AGAAGAAAGAGTTAATGAAGGCACAGAGTCTGCCCAAGACTTCAGCATCCCAAGCACGCAAGGCCATGATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020718.10
ENSMUST00000020721.15
ENSMUST00000075118.10
ENSMUST00000110011.8
ENSMUST00000170588.8