Pregenerated sensors for SMS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071708Ensembl transcript IDs: ENSMUST00000112529.8, ENSMUST00000145477.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGGGTCGGAGTAGAGCACAGGGTAGGGTGGGTGTTGGTTCAGTTTaGATGCTTCGGTGTCAAAATAACAAGGGCTCAAAACGGAGACCC | + |
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Preference number: 1 (lower is better) Translates to: VGRSRAQGRVGVGSV*MLRCQNNKGSKRRP Trigger: GGGTCTCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAACCAACACCCACCCTACCCTGTGCTCTACTCCGACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR GCA 90 bp | GTCGGAGTAGAGCACAGGGTAGGGTGGGTGTTGGTTCAGTTTGCATaGTTCGGTGTCAAAATAACAAGGGCTCAAAACGGAGACCCTCCT | + |
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Preference number: 1 (lower is better) Translates to: VGVEHRVGWVLVQFA*FGVKITRAQNGDPP Trigger: AGGAGGGTCTCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAACCAACACCCACCCTACCCTGTGCTCTACTCCGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CCA 90 bp | ACAACAAATCCATTAGCATTCCTTAAGAGGCAGCCAAAGCGAAGGTaGGTCGGAGTAGAGCACAGGGTAGGGTGGGTGTTGGTTCAGTTT | + |
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Preference number: 1 (lower is better) Translates to: TTNPLAFLKRQPKRR*VGVEHRVGWVLVQF Trigger: AAACTGAACCAACACCCACCCTACCCTGTGCTCTACTCCGACCCACCTTCGCTTTGGCTGCCTCTTAAGGAATGCTAATGGATTTGTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR TCA 90 bp | GCCTTTGGATCTCTAATCAGGGAGAGCAGTAACAGAAATCATCTTTaGCTTTCACCCTTTTCAGGCAGGCAAAAATCTTCTGCTATCCTT | + |
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Preference number: 1 (lower is better) Translates to: AFGSLIRESSNRNHL*LSPFSGRQKSSAIL Trigger: AAGGATAGCAGAAGATTTTTGCCTGCCTGAAAAGGGTGAAAGTCAAAGATGATTTCTGTTACTGCTCTCCCTGATTAGAGATCCAAAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR TCA 90 bp | AAATACAAAGTCTTGTGTCAGCAATTGTTAGGGAAAGCAAGGACATaGCTATTCCAAGTCTACAGGAAGAAGCAGCACATTTGTTTATTC | + |
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Preference number: 1 (lower is better) Translates to: KYKVLCQQLLGKART*LFQVYRKKQHICLF Trigger: GAATAAACAAATGTGCTGCTTCTTCCTGTAGACTTGGAATAGTCATGTCCTTGCTTTCCCTAACAATTGCTGACACAAGACTTTGTATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR TCA 90 bp | GTCTTGTCCTGTCTTATTTGTTCCTTCCTATCTTGGGAGGGACAATaGAACTTGAGCCTGATTTCCATTAGTAAATTTTCAATGTTTTAC | + |
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Preference number: 1 (lower is better) Translates to: VLSCLICSFLSWEGQ*NLSLISISKFSMFY Trigger: GTAAAACATTGAAAATTTACTAATGGAAATCAGGCTCAAGTTTCATTGTCCCTCCCAAGATAGGAAGGAACAAATAAGACAGGACAAGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CCA 90 bp | TACTCTTCACGGATCACGCAGGTCAGTCCCCTCATTAATATTACCCCAGCAGCTTGGAGGTCAGGAAGGTaGCTCGCAGCACACGTCATT | + |
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Preference number: 2 (lower is better) Translates to: YSSRITQVSPLINITPAAWRSGR*LAAHVI Trigger: AATGACGTGTGCTGCGAGCCACCTTCCTGACCTCCA...AGCTGCTGGGGTAATATTAATGAGGGGACTGACCTGCGTGATCCGTGAAGAGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGAAGGTGGCTCGCAGCACACGTCATTCTCATCTTTAAGGCTTAGCTTTCTTTGGAGGTCAGGAAGGTaGCTCGCAGCACACGTCATT | + |
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Preference number: 2 (lower is better) Translates to: QEGGSQHTSFSSLRLSFLWRSGR*LAAHVI Trigger: AATGACGTGTGCTGCGAGCCACCTTCCTGACCTCCA...AAGAAAGCTAAGCCTTAAAGATGAGAATGACGTGTGCTGCGAGCCACCTTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145477.8 |
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| 3UTR-3UTR CCA 90 bp | TACTCTTCACGGATCACGCAGGTCAGTCCCCTCATTAATATTACCCCAGCAGCTGGGGAAGAATTTGGGTaGAGAAGTGTCTACTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: YSSRITQVSPLINITPAAGEEFG*RSVYWA Trigger: AGCCCAGTAGACACTTCTCCACCCAAATTCTTCCCC...AGCTGCTGGGGTAATATTAATGAGGGGACTGACCTGCGTGATCCGTGAAGAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CCA 90 bp | GTTCAGTTTGCATGCTTCGGTGTCAAAATAACAAGGGCTCAAAACGGAGACCCTCACTGGGGAAGAATTTaGGTGGAGAAGTGTCTACTG | + |
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Preference number: 2 (lower is better) Translates to: VQFACFGVKITRAQNGDPHWGRI*VEKCLL Trigger: CAGTAGACACTTCTCCACCCAAATTCTTCCCCAGTG...AGGGTCTCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR TCA 90 bp | TTAGCCTCACATAACCTTATCCTCTTCATTTCTACCACCTGGTGCTTAGCAGGATCTTGGGAGGGACAATaGAACTTGAGCCTGATTTCC | + |
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Preference number: 2 (lower is better) Translates to: LASHNLILFISTTWCLAGSWEGQ*NLSLIS Trigger: GGAAATCAGGCTCAAGTTTCATTGTCCCTCCCAAGA...TCCTGCTAAGCACCAGGTGGTAGAAATGAAGAGGATAAGGTTATGTGAGGCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR GCA 90 bp | TTAGCCTCACATAACCTTATCCTCTTCATTTCTACCACCTGGTGCTTAGCAGGAATTCTAGGGGGTCAGTaGATTCTGCAGTCTTTGCTG | + |
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Preference number: 2 (lower is better) Translates to: LASHNLILFISTTWCLAGILGGQ*ILQSLL Trigger: CAGCAAAGACTGCAGAATGCACTGACCCCCTAGAAT...TCCTGCTAAGCACCAGGTGGTAGAAATGAAGAGGATAAGGTTATGTGAGGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR TCA 90 bp | AACCAATTAGCCTCACATAACCTTATCCTCTTCATTTCTACCACCTGGTGCTTATGCCACAGGACTACATaGACTCTAGTGTGCACTTGC | + |
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Preference number: 2 (lower is better) Translates to: NQLASHNLILFISTTWCLCHRTT*TLVCTC Trigger: GCAAGTGCACACTAGAGTTCATGTAGTCCTGTGGCA...TAAGCACCAGGTGGTAGAAATGAAGAGGATAAGGTTATGTGAGGCTAATTGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR GCA 90 bp | TTAGCCTCACATAACCTTATCCTCTTCATTTCTACCACCTGGTGCTTAGCAGGAACTCTAGTGTGCACTTaGACATCCTACAGTCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: LASHNLILFISTTWCLAGTLVCT*TSYSLL Trigger: GAGAAGACTGTAGGATGTGCAAGTGCACACTAGAGT...TCCTGCTAAGCACCAGGTGGTAGAAATGAAGAGGATAAGGTTATGTGAGGCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR TCA 90 bp | AACCAATTAGCCTCACATAACCTTATCCTCTTCATTTCTACCACCTGGTGCTTAAAGTCAATTTGGGGGTaGGAGGGGAGAAACACTATC | + |
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Preference number: 2 (lower is better) Translates to: NQLASHNLILFISTTWCLKSIWG*EGRNTI Trigger: GATAGTGTTTCTCCCCTCTCACCCCCAAATTGACTT...TAAGCACCAGGTGGTAGAAATGAAGAGGATAAGGTTATGTGAGGCTAATTGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CAA 90 bp | GGTTTGCGCTCACTTTTAAAGATCATTTGTCTTGTCCTGTCTTATTaGTTCCTTCCTATCTTGGGAGGGACAATGAAACTTGAGCCTGAT | + |
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Preference number: 2 (lower is better) Translates to: GLRSLLKIICLVLSY*FLPILGGTMKLEPD Trigger: ATCAGGCTCAAGTTTCATTGTCCCTCCCAAGATAGGAAGGAACAAATAAGACAGGACAAGACAAATGATCTTTAAAAGTGAGCGCAAACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR GCA 90 bp | GTTCAGTTTGCATGCTTCGGTGTCAAAATAACAAGGGCTCAAAACGGAGACCCTTTATCCACAATACAATaGCAAGTTGCTATTCACATG | + |
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Preference number: 2 (lower is better) Translates to: VQFACFGVKITRAQNGDPLSTIQ*QVAIHM Trigger: CATGTGAATAGCAACTTGGCATTGTATTGTGGATAA...AGGGTCTCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR TCA 90 bp | ATTGTTAGGGAAAGCAAGGACATGACTATTCCAAGTCTACAGGAAGAAGCAGCACAAATCAGTCACATCTaGGTTCACATTTATCACTCA | + |
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Preference number: 2 (lower is better) Translates to: IVRESKDMTIPSLQEEAAQISHI*VHIYHS Trigger: TGAGTGATAAATGTGAACTCAGATGTGACTGATTTG...TGCTGCTTCTTCCTGTAGACTTGGAATAGTCATGTCCTTGCTTTCCCTAACAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CCA 90 bp | GACTATTCCAAGTCTACAGGAAGAAGCAGCACATTTGTTTATTCAGATAGTAATAGCTCCAGGTTAGACTaGGCTACATACATACAGTCA | + |
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Preference number: 2 (lower is better) Translates to: DYSKSTGRSSTFVYSDSNSSRLD*ATYIQS Trigger: TGACTGTATGTATGTAGCCCAGTCTAACCTGGAGCT...ATTACTATCTGAATAAACAAATGTGCTGCTTCTTCCTGTAGACTTGGAATAGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTTCAGCAAATCAGTCACATCTGAGTTCACATTTATCACTCAAGATAAAAACAACAGAAATCATCTTTaGCTTTCACCCTTTTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: SFSKSVTSEFTFITQDKNNRNHL*LSPFSG Trigger: GCCTGAAAAGGGTGAAAGTCAAAGATGATTTCTGTT...GTTTTTATCTTGAGTGATAAATGTGAACTCAGATGTGACTGATTTGCTGAAGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR GCA 90 bp | ACATACAGTCACTGTTTCAAAAGTAATCGTAAGAATAACAGTACAGTGGGTAAGCAGGCAAAAATCTTCTaGTATCCTTGGAACAACTTT | + |
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Preference number: 2 (lower is better) Translates to: TYSHCFKSNRKNNSTVGKQAKIF*YPWNNF Trigger: AAAGTTGTTCCAAGGATAGCAGAAGATTTTTGCCTG...CTTACCCACTGTACTGTTATTCTTACGATTACTTTTGAAACAGTGACTGTATGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CCA 72 bp | CCATTAGCATTCCTTAAGAGGCAGCCAAAGCGAAGGTaGGTCGGAGTAGAGCACAGGGTAGGGTGGGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: PLAFLKRQPKRR*VGVEHRVGWVL Trigger: CAACACCCACCCTACCCTGTGCTCTACTCCGACCCACCTTCGCTTTGGCTGCCTCTTAAGGAATGCTAATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR GCA 72 bp | GAGCACAGGGTAGGGTGGGTGTTGGTTCAGTTTGCATaGTTCGGTGTCAAAATAACAAGGGCTCAAAACGGA | + |
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Preference number: 3 (lower is better) Translates to: EHRVGWVLVQFA*FGVKITRAQNG Trigger: TCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAACCAACACCCACCCTACCCTGTGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CAA 90 bp | CTAAGTCAATTTGGGGGTGAGAGGGGAGAAACACTATCAGGAACTTCTCTCCAGGGAATTCATGAGCAGTaGCCTGACACATTTGATGGC | + |
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Preference number: 3 (lower is better) Translates to: LSQFGGERGETLSGTSLQGIHEQ*PDTFDG Trigger: GCCATCAAATGTGTCAGGCAACTGCTCATGAATTCC...CTGGAGAGAAGTTCCTGATAGTGTTTCTCCCCTCTCACCCCCAAATTGACTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112529.8 ENSMUST00000145477.8 |
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| 3UTR TCA 72 bp | CCTCTTCATTTCTACCACCTGGTGCTTAGCAGGAACTaGGTCACCCGAATTATGAGTGGATCTGTGGTTATG | + |
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Preference number: 3 (lower is better) Translates to: PLHFYHLVLSRN*VTRIMSGSVVM Trigger: CATAACCACAGATCCACTCATAATTCGGGTGACTCAGTTCCTGCTAAGCACCAGGTGGTAGAAATGAAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR GCA 72 bp | AGTAGAGCACAGGGTAGGGTGGGTGTTGGTTCAGTTTaGATGCTTCGGTGTCAAAATAACAAGGGCTCAAAA | + |
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Preference number: 3 (lower is better) Translates to: SRAQGRVGVGSV*MLRCQNNKGSK Trigger: TTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAACCAACACCCACCCTACCCTGTGCTCTACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CAA 90 bp | CTAGAAGGAATTCATGAGCAGTTGCCTGACACATTTGATGGCATATACGGCATAGGAATTCATGAGCAGTaGCCTGACACATTTGATGGC | + |
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Preference number: 3 (lower is better) Translates to: LEGIHEQLPDTFDGIYGIGIHEQ*PDTFDG Trigger: GCCATCAAATGTGTCAGGCAACTGCTCATGAATTCC...TATGCCGTATATGCCATCAAATGTGTCAGGCAACTGCTCATGAATTCCTTCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112529.8 ENSMUST00000145477.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCAGTTTGCATGCTTCGGTGTCAAAATAACAAGGGCTCAAAACGGAGACCCTTTGTTCCTTCCTATCTaGGGAGGGACAATGAAACTT | + |
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Preference number: 3 (lower is better) Translates to: VQFACFGVKITRAQNGDPLFLPI*GGTMKL Trigger: AAGTTTCATTGTCCCTCCCAAGATAGGAAGGAACAA...AGGGTCTCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CAA 90 bp | CAACCCAGCCTTCCCCGGCCCAGGTGGAGCTCTTTTATAAATATTCAATCACATAATCTTCTGCTATCCTaGGAACAACTTTATAATGGG | + |
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Preference number: 3 (lower is better) Translates to: QPSLPRPRWSSFINIQSHNLLLS*EQLYNG Trigger: CCCATTATAAAGTTGTTCCAAGGATAGCAGAAGATT...ATGTGATTGAATATTTATAAAAGAGCTCCACCTGGGCCGGGGAAGGCTGGGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCAGTTTGCATGCTTCGGTGTCAAAATAACAAGGGCTCAAAACGGAGACCCTACAAATGGCATAGGTTaGCGCTCACTTTTAAAGATC | + |
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Preference number: 3 (lower is better) Translates to: VQFACFGVKITRAQNGDPTNGIG*RSLLKI Trigger: GATCTTTAAAAGTGAGCGCAAACCTATGCCATTTGT...AGGGTCTCCGTTTTGAGCCCTTGTTATTTTGACACCGAAGCATGCAAACTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR-3UTR CAA 90 bp | ACATACAGTCACTGTTTCAAAAGTAATCGTAAGAATAACAGTACAGTGGGTAAGCTTGTCCTGTCTTATTaGTTCCTTCCTATCTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: TYSHCFKSNRKNNSTVGKLVLSY*FLPILG Trigger: TCCCAAGATAGGAAGGAACAAATAAGACAGGACAAG...CTTACCCACTGTACTGTTATTCTTACGATTACTTTTGAAACAGTGACTGTATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR GCA 72 bp | AATTATCCACAATACAATGCCAAGTTGCTATTCACATaGACTTTCTTAAGAGTTAAGTTATTTTGCCACAGG | + |
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Preference number: 3 (lower is better) Translates to: NYPQYNAKLLFT*TFLRVKLFCHR Trigger: CCTGTGGCAAAATAACTTAACTCTTAAGAAAGTGCATGTGAATAGCAACTTGGCATTGTATTGTGGATAATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| CDS-3UTR CCA 90 bp | CTAAGTCAATTTGGGGGTGAGAGGGGAGAAACACTATCAGGAACTTCTCTCCAGCCTGCTCCTGAAAAATaGACTGAAGGCCTTTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LSQFGGERGETLSGTSLQPAPEK*TEGLSE Trigger: TTCTGAAAGGCCTTCAGTCCATTTTTCAGGAGCAGG...CTGGAGAGAAGTTCCTGATAGTGTTTCTCCCCTCTCACCCCCAAATTGACTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000112529.8 ENSMUST00000145477.8 |
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| CDS-3UTR GCA 90 bp | CAGGAAGGTGGCTCGCAGCACACGTCATTCTCATCTTTAAGGCTTAGCTTTCTTTGTCAGTTTCTTGTTTaGCTTGCACATCACTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: QEGGSQHTSFSSLRLSFLCQFLV*LAHHCR Trigger: ACGACAGTGATGTGCAAGGCAAACAAGAAACTGACA...AAGAAAGCTAAGCCTTAAAGATGAGAATGACGTGTGCTGCGAGCCACCTTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145477.8 |
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| CDS-3UTR GCA 90 bp | AATTTGGGTGGAGAAGTGTCTACTGGGCTGTTTTTACCCTATGCATGCACCAAATGTCAGTTTCTTGTTTaGCTTGCACATCACTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: NLGGEVSTGLFLPYACTKCQFLV*LAHHCR Trigger: ACGACAGTGATGTGCAAGGCAAACAAGAAACTGACA...TTTGGTGCATGCATAGGGTAAAAACAGCCCAGTAGACACTTCTCCACCCAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| CDS-3UTR CCA 90 bp | AACCAATTAGCCTCACATAACCTTATCCTCTTCATTTCTACCACCTGGTGCTTACCTGCTCCTGAAAAATaGACTGAAGGCCTTTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: NQLASHNLILFISTTWCLPAPEK*TEGLSE Trigger: TTCTGAAAGGCCTTCAGTCCATTTTTCAGGAGCAGG...TAAGCACCAGGTGGTAGAAATGAAGAGGATAAGGTTATGTGAGGCTAATTGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CAA 72 bp | ATTTGTCTTGTCCTGTCTTATTTGTTCCTTCCTATCTaGGGAGGGACAATGAAACTTGAGCCTGATTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: ICLVLSYLFLPI*GGTMKLEPDFH Trigger: ATGGAAATCAGGCTCAAGTTTCATTGTCCCTCCCAAGATAGGAAGGAACAAATAAGACAGGACAAGACAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CAA 72 bp | AATCGTAAGAATAACAGTACAGTGGGTAAGGGGCAATaGGCCTTAGCTAATATTCTAACTGTAGCAGTACAT | + |
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Preference number: 4 (lower is better) Translates to: NRKNNSTVGKGQ*ALANILTVAVH Trigger: ATGTACTGCTACAGTTAGAATATTAGCTAAGGCCAATTGCCCCTTACCCACTGTACTGTTATTCTTACGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| CDS-3UTR TCA 90 bp | ACATACAGTCACTGTTTCAAAAGTAATCGTAAGAATAACAGTACAGTGGGTAAGTTTCAGAACCTTCATTaGCAGGTCGAGAATCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: TYSHCFKSNRKNNSTVGKFQNLH*QVENQS Trigger: AGACTGATTCTCGACCTGTCAATGAAGGTTCTGAAA...CTTACCCACTGTACTGTTATTCTTACGATTACTTTTGAAACAGTGACTGTATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CAA 72 bp | CTTCTTCCATGTCAATCTAAAACAAATGGCATAGGTTaGCGCTCACTTTTAAAGATCATTTGTCTTGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLPCQSKTNGIG*RSLLKIICLVL Trigger: CAGGACAAGACAAATGATCTTTAAAAGTGAGCGCAAACCTATGCCATTTGTTTTAGATTGACATGGAAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| 3UTR CAA 72 bp | TCACTTTTAAAGATCATTTGTCTTGTCCTGTCTTATTaGTTCCTTCCTATCTTGGGAGGGACAATGAAACTT | + |
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Preference number: 4 (lower is better) Translates to: SLLKIICLVLSY*FLPILGGTMKL Trigger: AAGTTTCATTGTCCCTCCCAAGATAGGAAGGAACAAATAAGACAGGACAAGACAAATGATCTTTAAAAGTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| CDS-3UTR CAA 90 bp | CTAAGTCAATTTGGGGGTGAGAGGGGAGAAACACTATCAGGAACTTCTCTCCAGAAGGCTGTCAGTTTCTaGTTTGCCTTGCACATCACT | + |
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Preference number: 5 (lower is better) Translates to: LSQFGGERGETLSGTSLQKAVSF*FALHIT Trigger: AGTGATGTGCAAGGCAAACAAGAAACTGACAGCCTT...CTGGAGAGAAGTTCCTGATAGTGTTTCTCCCCTCTCACCCCCAAATTGACTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112529.8 ENSMUST00000145477.8 |
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| CDS-3UTR CAA 90 bp | CAACCCAGCCTTCCCCGGCCCAGGTGGAGCTCTTTTATAAATATTCAATCACATTCTTGTTCGTGTAAGTaGCTAAATATCCATGGTCCT | + |
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Preference number: 5 (lower is better) Translates to: QPSLPRPRWSSFINIQSHSCSCK*LNIHGP Trigger: AGGACCATGGATATTTAGCAACTTACACGAACAAGA...ATGTGATTGAATATTTATAAAAGAGCTCCACCTGGGCCGGGGAAGGCTGGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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| CDS-3UTR CAA 90 bp | CTAAGTCAATTTGGGGGTGAGAGGGGAGAAACACTATCAGGAACTTCTCTCCAGTCTTGTTCGTGTAAGTaGCTAAATATCCATGGTCCT | + |
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Preference number: 5 (lower is better) Translates to: LSQFGGERGETLSGTSLQSCSCK*LNIHGP Trigger: AGGACCATGGATATTTAGCAACTTACACGAACAAGA...CTGGAGAGAAGTTCCTGATAGTGTTTCTCCCCTCTCACCCCCAAATTGACTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112529.8 ENSMUST00000145477.8 |
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| CDS-3UTR CAA 90 bp | ACAAATGGCATAGGTTTGCGCTCACTTTTAAAGATCATTTGTCTTGTCCTGTCTAAGGCTGTCAGTTTCTaGTTTGCCTTGCACATCACT | + |
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Preference number: 5 (lower is better) Translates to: TNGIGLRSLLKIICLVLSKAVSF*FALHIT Trigger: AGTGATGTGCAAGGCAAACAAGAAACTGACAGCCTT...AGACAGGACAAGACAAATGATCTTTAAAAGTGAGCGCAAACCTATGCCATTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112529.8 |
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