RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMR3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029280

Ensembl transcript IDs: ENSMUST00000031211.6, ENSMUST00000189633.7

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp GCTTTGGTTGATTTTATTCTTGCTGCAAAAGGGAATTTATTAATTCCCACAACCCTTCTAGGGCCTCTGTaGCACTCACAGGACAGGAAG +
Preference number: 4 (lower is better)
Translates to: ALVDFILAAKGNLLIPTTLLGPL*HSQDRK
Trigger: CTTCCTGTCCTGTGAGTGTCACAGAGGCCCTAGAAG...GGTTGTGGGAATTAATAAATTCCCTTTTGCAGCAAGAATAAAATCAACCAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189633.7
CDS-3UTR GCA 90 bp GCTTTGGTTGATTTTATTCTTGCTGCAAAAGGGAATTTATTAATTCCCACAACCAGCTGGCATTGTAGTTaGTTGTACTGTGGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: ALVDFILAAKGNLLIPTTSWHCS*LYCGRR
Trigger: CCTCCTACCACAGTACAAGCAACTACAATGCCAGCT...GGTTGTGGGAATTAATAAATTCCCTTTTGCAGCAAGAATAAAATCAACCAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189633.7
CDS-3UTR GCA 90 bp GCTTTGGTTGATTTTATTCTTGCTGCAAAAGGGAATTTATTAATTCCCACAACCAGCATCCTACAAGAATaGAGAGGCCTAAGACCAAAT +
Preference number: 4 (lower is better)
Translates to: ALVDFILAAKGNLLIPTTSILQE*RGLRPN
Trigger: ATTTGGTCTTAGGCCTCTGCATTCTTGTAGGATGCT...GGTTGTGGGAATTAATAAATTCCCTTTTGCAGCAAGAATAAAATCAACCAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189633.7
CDS CCA 90 bp TGGAGGGGGTGGTCGACCAATTCCTGGACCAAAGGGTGGAGGGGGTaGTCTACCAATTCCTGGACCAAAGGGTGGAGGGTGTGGTCTACC +
Preference number: 5 (lower is better)
Translates to: WRGWSTNSWTKGWRG*STNSWTKGWRVWST
Trigger: GGTAGACCACACCCTCCACCCTTTGGTCCAGGAATTGGTAGACCACCCCCTCCACCCTTTGGTCCAGGAATTGGTCGACCACCCCCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 90 bp ACAAGGAGGTGGAGGGGGTGGTCGACCAATTCCTGGACCAAAGGGTaGAGGGGGTGGTCTACCAATTCCTGGACCAAAGGGTGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: TRRWRGWSTNSWTKG*RGWSTNSWTKGWRV
Trigger: CACCCTCCACCCTTTGGTCCAGGAATTGGTAGACCACCCCCTCCACCCTTTGGTCCAGGAATTGGTCGACCACCCCCTCCACCTCCTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 90 bp AGGTGGAGGAGACGGATTGCTTGGAGGTCTAGGATGTGGAGGAACTaGTGGACAAGGAGGTGGAGGGGGTGGTCGACCAATTCCTGGACC +
Preference number: 5 (lower is better)
Translates to: RWRRRIAWRSRMWRN*WTRRWRGWSTNSWT
Trigger: GGTCCAGGAATTGGTCGACCACCCCCTCCACCTCCTTGTCCACCAGTTCCTCCACATCCTAGACCTCCAAGCAATCCGTCTCCTCCACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 90 bp TGGAGGAGACGGATTGCTTGGAGGTCTAGGATGTGGAGGAACTGGTaGACAAGGAGGTGGAGGGGGTGGTCGACCAATTCCTGGACCAAA +
Preference number: 5 (lower is better)
Translates to: WRRRIAWRSRMWRNW*TRRWRGWSTNSWTK
Trigger: TTTGGTCCAGGAATTGGTCGACCACCCCCTCCACCTCCTTGTCCACCAGTTCCTCCACATCCTAGACCTCCAAGCAATCCGTCTCCTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp TGGACCAAAGGGTGGAGGGTGTGGTCTACCAATTCCTaGACCATGGGGAGGGGGAGGAGGAGGGAATGGTCC +
Preference number: 6 (lower is better)
Translates to: WTKGWRVWSTNS*TMGRGRRREWS
Trigger: GGACCATTCCCTCCTCCTCCCCCTCCCCATGGTCCAGGAATTGGTAGACCACACCCTCCACCCTTTGGTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp TGGAGGGGGTGGTCGACCAATTCCTGGACCAAAGGGTaGAGGGGGTGGTCTACCAATTCCTGGACCAAAGGG +
Preference number: 6 (lower is better)
Translates to: WRGWSTNSWTKG*RGWSTNSWTKG
Trigger: CCCTTTGGTCCAGGAATTGGTAGACCACCCCCTCCACCCTTTGGTCCAGGAATTGGTCGACCACCCCCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp TGGACAAGGAGGTGGAGGGGGTGGTCGACCAATTCCTaGACCAAAGGGTGGAGGGGGTGGTCTACCAATTCC +
Preference number: 6 (lower is better)
Translates to: WTRRWRGWSTNS*TKGWRGWSTNS
Trigger: GGAATTGGTAGACCACCCCCTCCACCCTTTGGTCCAGGAATTGGTCGACCACCCCCTCCACCTCCTTGTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp TGGTCTACCAATTCCTGGACCAAAGGGTGGAGGGTGTaGTCTACCAATTCCTGGACCATGGGGAGGGGGAGG +
Preference number: 6 (lower is better)
Translates to: WSTNSWTKGWRV*STNSWTMGRGR
Trigger: CCTCCCCCTCCCCATGGTCCAGGAATTGGTAGACCACACCCTCCACCCTTTGGTCCAGGAATTGGTAGACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp AGGTCTAGGATGTGGAGGAACTGGTGGACAAGGAGGTaGAGGGGGTGGTCGACCAATTCCTGGACCAAAGGG +
Preference number: 6 (lower is better)
Translates to: RSRMWRNWWTRR*RGWSTNSWTKG
Trigger: CCCTTTGGTCCAGGAATTGGTCGACCACCCCCTCCACCTCCTTGTCCACCAGTTCCTCCACATCCTAGACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp CGGATTGCTTGGAGGTCTAGGATGTGGAGGAACTGGTaGACAAGGAGGTGGAGGGGGTGGTCGACCAATTCC +
Preference number: 6 (lower is better)
Translates to: RIAWRSRMWRNW*TRRWRGWSTNS
Trigger: GGAATTGGTCGACCACCCCCTCCACCTCCTTGTCCACCAGTTCCTCCACATCCTAGACCTCCAAGCAATCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp TGGACCAAAGGGTGGAGGGGGTGGTCTACCAATTCCTaGACCAAAGGGTGGAGGGTGTGGTCTACCAATTCC +
Preference number: 6 (lower is better)
Translates to: WTKGWRGWSTNS*TKGWRVWSTNS
Trigger: GGAATTGGTAGACCACACCCTCCACCCTTTGGTCCAGGAATTGGTAGACCACCCCCTCCACCCTTTGGTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp AGACGGATTGCTTGGAGGTCTAGGATGTGGAGGAACTaGTGGACAAGGAGGTGGAGGGGGTGGTCGACCAAT +
Preference number: 6 (lower is better)
Translates to: RRIAWRSRMWRN*WTRRWRGWSTN
Trigger: ATTGGTCGACCACCCCCTCCACCTCCTTGTCCACCAGTTCCTCCACATCCTAGACCTCCAAGCAATCCGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp GGTAGGAGGTCCGGTAGGAGGAATGCTTGGAGTAGGTaGAGGAGACGGATTGCTTGGAGGTCTAGGATGTGG +
Preference number: 6 (lower is better)
Translates to: GRRSGRRNAWSR*RRRIAWRSRMW
Trigger: CCACATCCTAGACCTCCAAGCAATCCGTCTCCTCCACCTACTCCAAGCATTCCTCCTACCGGACCTCCTACC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp AGGAATGCTTGGAGTAGGTGGAGGAGACGGATTGCTTaGAGGTCTAGGATGTGGAGGAACTGGTGGACAAGG +
Preference number: 6 (lower is better)
Translates to: RNAWSRWRRRIA*RSRMWRNWWTR
Trigger: CCTTGTCCACCAGTTCCTCCACATCCTAGACCTCCAAGCAATCCGTCTCCTCCACCTACTCCAAGCATTCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CCA 72 bp TTGTACTGTGGTAGGAGGTCCGGTAGGAGGAATGCTTaGAGTAGGTGGAGGAGACGGATTGCTTGGAGGTCT +
Preference number: 6 (lower is better)
Translates to: LYCGRRSGRRNA*SRWRRRIAWRS
Trigger: AGACCTCCAAGCAATCCGTCTCCTCCACCTACTCCAAGCATTCCTCCTACCGGACCTCCTACCACAGTACAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS CAA 72 bp AGTTATGGAGATACTGGCAGCTGGCATTGTAGTTGCTaGTACTGTGGTAGGAGGTCCGGTAGGAGGAATGCT +
Preference number: 6 (lower is better)
Translates to: SYGDTGSWHCSC*YCGRRSGRRNA
Trigger: AGCATTCCTCCTACCGGACCTCCTACCACAGTACAAGCAACTACAATGCCAGCTGCCAGTATCTCCATAACT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6
CDS TCA 72 bp AATGGTCCTCTAGGATCATGTCTTCTAGGGCCTCTGTaGCACTCACAGGACAGGAAGCATCCTACAAGAATG +
Preference number: 6 (lower is better)
Translates to: NGPLGSCLLGPL*HSQDRKHPTRM
Trigger: CATTCTTGTAGGATGCTTCCTGTCCTGTGAGTGTCACAGAGGCCCTAGAAGACATGATCCTAGAGGACCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031211.6
ENSMUST00000189633.7
CDS GCA 72 bp AGTAGTTATGGAGATACTGGCAGCTGGCATTGTAGTTaGTTGTACTGTGGTAGGAGGTCCGGTAGGAGGAAT +
Preference number: 6 (lower is better)
Translates to: SSYGDTGSWHCS*LYCGRRSGRRN
Trigger: ATTCCTCCTACCGGACCTCCTACCACAGTACAAGCAACTACAATGCCAGCTGCCAGTATCTCCATAACTACT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031211.6