Pregenerated sensors for SMR2L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090302

Ensembl transcript IDs: ENSMUST00000169154.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	AAACCTTTAAAGATTATTTCTCCCAAAATCCCACAGTaGTTAGGTTTATACTATCCTGACTGCCAAAAGGAA	+
Preference number: 3 (lower is better) Translates to: KPLKIISPKIPQ*LGLYYPDCQKE Trigger: TTCCTTTTGGCAGTCAGGATAGTATAAACCTAAGCACTGTGGGATTTTGGGAGAAATAATCTTTAAAGGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS-3UTR CCA 90 bp	ATTATTTTCCACTATCATCAAAAACTACCAGTGGAATTTGGAGCAGTAGCAGTAGGTCACGCTGTCCTCTaGGTCCTCTGTGACACTCAC	+
Preference number: 4 (lower is better) Translates to: IIFHYHQKLPVEFGAVAVGHAVL*VLCDTH Trigger: GTGAGTGTCACAGAGGACCCAGAGGACAGCGTGACC...TACTGCTACTGCTCCAAATTCCACTGGTAGTTTTTGATGATAGTGGAAAATAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS-3UTR CCA 90 bp	CAGTGCTTAGGTTTATACTATCCTGACTGCCAAAAGGAATTTATTATTTTCCACTATTTGCTTTTACTGTaGGAGGAGGTCGGGCAGGAG	+
Preference number: 4 (lower is better) Translates to: QCLGLYYPDCQKEFIIFHYLLLL*EEVGQE Trigger: CTCCTGCCCGACCTCCTCCCACAGTAAAAGCAAATA...GTGGAAAATAATAAATTCCTTTTGGCAGTCAGGATAGTATAAACCTAAGCACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS-3UTR TCA 90 bp	CAGTGCTTAGGTTTATACTATCCTGACTGCCAAAAGGAATTTATTATTTTCCACATGAGGATGATGAGTTaGAGGAGCGAGTGGTTTTCT	+
Preference number: 4 (lower is better) Translates to: QCLGLYYPDCQKEFIIFHMRMMS*RSEWFS Trigger: AGAAAACCACTCGCTCCTTCAACTCATCATCCTCAT...GTGGAAAATAATAAATTCCTTTTGGCAGTCAGGATAGTATAAACCTAAGCACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS-3UTR TCA 90 bp	ATTATTTTCCACTATCATCAAAAACTACCAGTGGAATTTGGAGCAGTAGCAGTAGCAGGAGAATTTCTTTaGGGGCTAATCGCTCTCATT	+
Preference number: 4 (lower is better) Translates to: IIFHYHQKLPVEFGAVAVAGEFL*GLIALI Trigger: AATGAGAGCGATTAGCCCTCAAAGAAATTCTCCTGC...TACTGCTACTGCTCCAAATTCCACTGGTAGTTTTTGATGATAGTGGAAAATAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS-3UTR CCA 90 bp	CAGTGCTTAGGTTTATACTATCCTGACTGCCAAAAGGAATTTATTATTTTCCACCAAATCCTGAACTCATaGGTAGAAAGGGTGGTAGAC	+
Preference number: 4 (lower is better) Translates to: QCLGLYYPDCQKEFIIFHQILNS*VERVVD Trigger: GTCTACCACCCTTTCTACCCATGAGTTCAGGATTTG...GTGGAAAATAATAAATTCCTTTTGGCAGTCAGGATAGTATAAACCTAAGCACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS-3UTR GCA 90 bp	ATCCCACAGTGCTTAGGTTTATACTATCCTGACTGCCAAAAGGAATTTATTATTCTCTGGTATTGTATTTaGTTTTACTGTGGGAGGAGG	+
Preference number: 4 (lower is better) Translates to: IPQCLGLYYPDCQKEFIILWYCI*FYCGRR Trigger: CCTCCTCCCACAGTAAAAGCAAATACAATACCAGAG...AATAATAAATTCCTTTTGGCAGTCAGGATAGTATAAACCTAAGCACTGTGGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS TCA 90 bp	ATGCTTGGGATCTGGCTGAGTGTGACGACTATGAGGATGATGAGTTaGAGGAGCGAGTGGTTTTCTAGGGTCACGCTGTCCTCTGGGTCC	+
Preference number: 5 (lower is better) Translates to: MLGIWLSVTTMRMMS*RSEWFSRVTLSSGS Trigger: GGACCCAGAGGACAGCGTGACCCTAGAAAACCACTCGCTCCTTCAACTCATCATCCTCATAGTCGTCACACTCAGCCAGATCCCAAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS TCA 72 bp	GGTTTTCTAGGGTCACGCTGTCCTCTGGGTCCTCTGTaGCACTCACCAGACAGGAAGCATCCTATAAGAAGC	+
Preference number: 6 (lower is better) Translates to: GFLGSRCPLGPL*HSPDRKHPIRS Trigger: GCTTCTTATAGGATGCTTCCTGTCTGGTGAGTGTCACAGAGGACCCAGAGGACAGCGTGACCCTAGAAAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS TCA 72 bp	ATCTGGCTGAGTGTGACGACTATGAGGATGATGAGTTaGAGGAGCGAGTGGTTTTCTAGGGTCACGCTGTCC	+
Preference number: 6 (lower is better) Translates to: IWLSVTTMRMMS*RSEWFSRVTLS Trigger: GGACAGCGTGACCCTAGAAAACCACTCGCTCCTTCAACTCATCATCCTCATAGTCGTCACACTCAGCCAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS CCA 72 bp	TGGGTAGAAAGGGTGGTAGACCAAATTGTCCATGCTTaGGATCTGGCTGAGTGTGACGACTATGAGGATGAT	+
Preference number: 6 (lower is better) Translates to: WVERVVDQIVHA*DLAECDDYEDD Trigger: ATCATCCTCATAGTCGTCACACTCAGCCAGATCCCAAGCATGGACAATTTGGTCTACCACCCTTTCTACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169154.2
CDS CCA 72 bp	CAGCTATTGTCTCTGGTATTGTATTTGCTTTTACTGTaGGAGGAGGTCGGGCAGGAGAATTTCTTTGAGGGC	+
Preference number: 6 (lower is better) Translates to: QLLSLVLYLLLL*EEVGQENFFEG Trigger: GCCCTCAAAGAAATTCTCCTGCCCGACCTCCTCCCACAGTAAAAGCAAATACAATACCAGAGACAATAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169154.2