Pregenerated sensors for SMR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029281Ensembl transcript IDs: ENSMUST00000087043.8, ENSMUST00000196070.2, ENSMUST00000196477.5, ENSMUST00000199635.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACCTTTGAAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTACACCAAATTGTACATaGTTGGGATCTGGCAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: TFEDYFTPNSTVLLFMLSTPNCT*LGSGRG Trigger: TCCTCTGCCAGATCCCAATCATGTACAATTTGGTGT...AGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTTCAAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR GCA 90 bp | AAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGACTGCCCCTGGTATTATATTTaGTTTTACTCTGGGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: KIISPQIPQCFCLCCLDCPWYYI*FYSGRS Trigger: ACTCCTCCCAGAGTAAAAGCAAATATAATACCAGGG...GCAGTCAAGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CCA 90 bp | AAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGACTGCTACATGATTGGGATCTaGCAGAGGATAAAGATGATA | + |
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Preference number: 4 (lower is better) Translates to: KIISPQIPQCFCLCCLDCYMIGI*QRIKMI Trigger: TATCATCTTTATCCTCTGCCAGATCCCAATCATGTA...GCAGTCAAGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR TCA 90 bp | AGGATGTTTCTTAAACCTTTGAAGATTATTTCACCCCAAATTCCACAGTGCTTTTTATCAGTGGAATTTTaGGCTTTGGCAGTAGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: RMFLKPLKIISPQIPQCFLSVEF*ALAVVV Trigger: CACAACTACTGCCAAAGCTCAAAATTCCACTGATAA...AAAGCACTGTGGAATTTGGGGTGAAATAATCTTCAAAGGTTTAAGAAACATCCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CCA 90 bp | ACCTTTGAAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTCAAATTGTACATGATTaGGATCTGGCAGAGGATAAA | + |
|
Preference number: 4 (lower is better) Translates to: TFEDYFTPNSTVLLFMLSQIVHD*DLAEDK Trigger: TTTATCCTCTGCCAGATCCCAATCATGTACAATTTG...AGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTTCAAAGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CCA 90 bp | AAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGACTGCATCCAAAATTATCAGTaGAATTTTGAGCTTTGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KIISPQIPQCFCLCCLDCIQNYQ*NFELWQ Trigger: CTGCCAAAGCTCAAAATTCCACTGATAATTTTGGAT...GCAGTCAAGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CCA 90 bp | ACCTTTGAAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGCAGTTATTGGCCCTaGTATTATATTTGCTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: TFEDYFTPNSTVLLFMLSCSYWP*YYICFY Trigger: GTAAAAGCAAATATAATACCAGGGCCAATAACTGCA...AGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTTCAAAGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CAA 90 bp | ACCTTTGAAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTCTTCTAGGACCATGTaGTCCTCTGGGTGCTCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: TFEDYFTPNSTVLLFMLSSSRTM*SSGCSV Trigger: CACAGAGCACCCAGAGGACAACATGGTCCTAGAAGA...AGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTTCAAAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CAA 90 bp | AAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGACTGCGGGTGGTACACCAAATaGTACATGATTGGGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: KIISPQIPQCFCLCCLDCGWYTK*YMIGIW Trigger: CCAGATCCCAATCATGTACAATTTGGTGTACCACCC...GCAGTCAAGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CAA 90 bp | AAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGACTGCAATGACGATGGTGAGTaGAAGGAGCTAATGTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KIISPQIPQCFCLCCLDCNDDGE*KELMFF Trigger: GAAGAACATTAGCTCCTTCAACTCACCATCGTCATT...GCAGTCAAGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS-3UTR CAA 90 bp | AAGATTATTTCACCCCAAATTCCACAGTGCTTTTGTTTATGCTGTCTTGACTGCGTAGTTGTGCAGTTATaGGCCCTGGTATTATATTTG | + |
|
Preference number: 5 (lower is better) Translates to: KIISPQIPQCFCLCCLDCVVVQL*ALVLYL Trigger: CAAATATAATACCAGGGCCAATAACTGCACAACTAC...GCAGTCAAGACAGCATAAACAAAAGCACTGTGGAATTTGGGGTGAAATAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS CCA 90 bp | ATTAAGAGAATGTGGTTGTTCAAACATGAAAATGGGGATATTGTCTaGTTGAGAAATCTGTACACGATTGGGATCAGGCTGAGGATAAAA | + |
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Preference number: 5 (lower is better) Translates to: IKRMWLFKHENGDIV*LRNLYTIGIRLRIK Trigger: TTTTATCCTCAGCCTGATCCCAATCGTGTACAGATTTCTCAACCAGACAATATCCCCATTTTCATGTTTGAACAACCACATTCTCTTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000087043.8 ENSMUST00000196070.2 ENSMUST00000196477.5 |
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| CDS CAA 72 bp | TGGTCTTGTAGGATCATGCTGTCCTCTGAAGCCTCTTaGGCACTCACTAGACAGGAAACATCCTATAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: WSCRIMLSSEAS*ALTRQETSYKN Trigger: GTTCTTATAGGATGTTTCCTGTCTAGTGAGTGCCAAAGAGGCTTCAGAGGACAGCATGATCCTACAAGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087043.8 |
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| CDS CAA 72 bp | TGGTCTTGTAGGATCATGCTGTCCTCTGAAGCCTCTTaGGCACTCACTAGAAAGGAAGCATCCTATAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: WSCRIMLSSEAS*ALTRKEASYKN Trigger: GTTCTTATAGGATGCTTCCTTTCTAGTGAGTGCCAAAGAGGCTTCAGAGGACAGCATGATCCTACAAGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196070.2 ENSMUST00000196477.5 |
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| CDS TCA 72 bp | TTTACTCTGGGAGGAGTTCGGGCAGGACAATTTCTTTaGGGGCTAGGATCTGAACTTAGAGTTAAAATAAGA | + |
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Preference number: 6 (lower is better) Translates to: FTLGGVRAGQFL*GLGSELRVKIR Trigger: TCTTATTTTAACTCTAAGTTCAGATCCTAGCCCTCAAAGAAATTGTCCTGCCCGAACTCCTCCCAGAGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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| CDS CCA 72 bp | TGGGGATATTGTCTGGTTGAGAAATCTGTACACGATTaGGATCAGGCTGAGGATAAAAATGAGAAGAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: WGYCLVEKSVHD*DQAEDKNEKKD Trigger: ATCCTTCTTCTCATTTTTATCCTCAGCCTGATCCCAATCGTGTACAGATTTCTCAACCAGACAATATCCCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087043.8 ENSMUST00000196070.2 ENSMUST00000196477.5 |
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| CDS CCA 72 bp | ATGTGGTTGTTCAAACATGAAAATGGGGATATTGTCTaGTTGAGAAATCTGTACACGATTGGGATCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: MWLFKHENGDIV*LRNLYTIGIRL Trigger: CAGCCTGATCCCAATCGTGTACAGATTTCTCAACCAGACAATATCCCCATTTTCATGTTTGAACAACCACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000087043.8 ENSMUST00000196070.2 ENSMUST00000196477.5 |
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| CDS CCA 72 bp | AAAGGGTGGTACACCAAATTGTACATGATTGGGATCTaGCAGAGGATAAAGATGATAATGACGATGGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: KGWYTKLYMIGI*QRIKMIMTMVS Trigger: ACTCACCATCGTCATTATCATCTTTATCCTCTGCCAGATCCCAATCATGTACAATTTGGTGTACCACCCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199635.5 |
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