Pregenerated sensors for SMPX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041476Ensembl transcript IDs: ENSMUST00000038007.10, ENSMUST00000112520.2, ENSMUST00000112521.8, ENSMUST00000147283.8, ENSMUST00000190091.7
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCCAATGTGAACTTTTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTGGCTTCTTTTCCTCTaGGGTGGTAGGAGCTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: SNVNFCVLSTTVHLWGQIWLLFL*GGRSSL Trigger: GAGGGAGCTCCTACCACCTCAGAGGAAAAGAAGCCA...AATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAAAAGTTCACATTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCTACAAGTTTTTGCTAGAGTCTTaGGCATTCAGGAGGTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: PQNHTSQVVNSCADLLYKFLLES*AFRRFV Trigger: CACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAA...CTTGTAGAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| 3UTR-3UTR TCA 90 bp | TTTTTCTCCCTTGGAAAAACACGTCAACGAAATGCATCTCCTGATTCTAAGCATGGATCTCAGACAAGTTaGCAACAGGTCCTGGAAATT | + |
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Preference number: 2 (lower is better) Translates to: FFSLGKTRQRNASPDSKHGSQTS*QQVLEI Trigger: AATTTCCAGGACCTGTTGTCAACTTGTCTGAGATCC...ATGCTTAGAATCAGGAGATGCATTTCGTTGACGTGTTTTTCCAAGGGAGAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTTTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTCAGTTCACTGTTGACAACAGGTCCTaGAAATTTCTTCATTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: TFVSFRLLFTFGDKFQFTVDNRS*KFLHSR Trigger: CCTGGAATGAAGAAATTTCCAGGACCTGTTGTCAAC...AGTGAACTGAAATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| 3UTR-3UTR CCA 90 bp | AAGACCGTGGGAAGTAACTTAAAGTACTTAACATCAAAATCACTGCTTGCACGTTTTTTGCTAGAGTCTTaGGCATTCAGGAGGTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: KTVGSNLKYLTSKSLLARFLLES*AFRRFV Trigger: CACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAA...ACGTGCAAGCAGTGATTTTGATGTTAAGTACTTTAAGTTACTTCCCACGGTCTT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| 3UTR-3UTR CAA 90 bp | CCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCTACAAGATTTTTGCTAGAGTCTaGGGCATTCAGGAGGTTTGT | + |
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Preference number: 3 (lower is better) Translates to: PQNHTSQVVNSCADLLYKIFARV*GIQEVC Trigger: ACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAAT...CTTGTAGAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| 3UTR TCA 72 bp | CAACGAAATGCATCTCCTGATTCTAAGCATCCAATGTaGACTTTTGTGTCCTTTCGACTACTGTTCACCTTT | + |
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Preference number: 3 (lower is better) Translates to: QRNASPDSKHPM*TFVSFRLLFTF Trigger: AAAGGTGAACAGTAGTCGAAAGGACACAAAAGTTCACATTGGATGCTTAGAATCAGGAGATGCATTTCGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCATAAAAATCACATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGACAAACAGGATATTTTaGCTAGAGTCTTGGGCATTC | + |
|
Preference number: 3 (lower is better) Translates to: LHKNHISPQNHTSQVVNSTNRIF*LESWAF Trigger: GAATGCCCAAGACTCTAGCAAAAATATCCTGTTTGT...CGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGATGTGATTTTTATGAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| 3UTR CCA 72 bp | TATAAATGTACAAACAGGATATTTTTGCTAGAGTCTTaGGCATTCAGGAGGTTTGTGATCATCATACAAATG | + |
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Preference number: 3 (lower is better) Translates to: YKCTNRIFLLES*AFRRFVIIIQM Trigger: CATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCTGTTTGTACATTTATA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR GCA 90 bp | CACATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGTTCCTTCTGGGAGGCTaGCCAGCTCCCGGACGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: HISPQNHTSQVVNSCADLFLLGG*PAPGRK Trigger: CTTTCGTCCGGGAGCTGGGCAGCCTCCCAGAAGGAA...CAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGATGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | CACATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGTGGCTTCTTTTCCTCTaGGGTGGTAGGAGCTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: HISPQNHTSQVVNSCADLWLLFL*GGRSSL Trigger: GAGGGAGCTCCTACCACCTCAGAGGAAAAGAAGCCA...CAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR GCA 90 bp | CTTTTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTCAGTTCACTTTTCCTTCTGGGAGGCTaGCCAGCTCCCGGACGAAAG | + |
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Preference number: 4 (lower is better) Translates to: LLCPFDYCSPLGTNFSSLFLLGG*PAPGRK Trigger: CTTTCGTCCGGGAGCTGGGCAGCCTCCCAGAAGGAA...AAGTGAACTGAAATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS-3UTR GCA 90 bp | GATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAATTTCCTTCTGGGAGGCTaGCCAGCTCCCGGACGAAAG | + |
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Preference number: 4 (lower is better) Translates to: DIFARVLGIQEVCDHHTNFLLGG*PAPGRK Trigger: CTTTCGTCCGGGAGCTGGGCAGCCTCCCAGAAGGAA...ATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | AACAGGATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATATACTCTCTTTCCTTCTaGGAGGCTGCCCAGCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: NRIFLLESWAFRRFVIIIYSLSF*EAAQLP Trigger: CGGGAGCTGGGCAGCCTCCCAGAAGGAAAGAGAGTA...TATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | AACAGGATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATATCGCCTGGATGGCTCTaGCGTTGGAAATTGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: NRIFLLESWAFRRFVIIISPGWL*RWKLAA Trigger: AGCAGCCAATTTCCAACGTCAGAGCCATCCAGGCGA...TATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | CCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCTACAAGCTCCCATTGGAATATTaGTATTCGCCTGGATGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PQNHTSQVVNSCADLLYKLPLEY*YSPGWL Trigger: GAGCCATCCAGGCGAATATCAATATTCCAATGGGAG...CTTGTAGAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | CACATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCCCATTGGAATATTaGTATTCGCCTGGATGGCTC | + |
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Preference number: 4 (lower is better) Translates to: HISPQNHTSQVVNSCADLLPLEY*YSPGWL Trigger: GAGCCATCCAGGCGAATATCAATATTCCAATGGGAG...CAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR GCA 90 bp | AAATATAAATGTACAAACAGGATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTCCTTCTGGGAGGCTaGCCAGCTCCCGGACGAAAG | + |
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Preference number: 4 (lower is better) Translates to: KYKCTNRIFLLESWAFRRFLLGG*PAPGRK Trigger: CTTTCGTCCGGGAGCTGGGCAGCCTCCCAGAAGGAA...CCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCTGTTTGTACATTTATATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | GATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAATTACTCTCTTTCCTTCTaGGAGGCTGCCCAGCTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: DIFARVLGIQEVCDHHTNYSLSF*EAAQLP Trigger: CGGGAGCTGGGCAGCCTCCCAGAAGGAAAGAGAGTA...ATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | GATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAATTCGCCTGGATGGCTCTaGCGTTGGAAATTGGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: DIFARVLGIQEVCDHHTNSPGWL*RWKLAA Trigger: AGCAGCCAATTTCCAACGTCAGAGCCATCCAGGCGA...ATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | CCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCTACAAGGGATCTCAGACAAGTTaGCAACAGGTCCTGGAAATT | + |
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Preference number: 4 (lower is better) Translates to: PQNHTSQVVNSCADLLYKGSQTS*QQVLEI Trigger: AATTTCCAGGACCTGTTGTCAACTTGTCTGAGATCC...CTTGTAGAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | ATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCGGATCTCAGACAAGTTaGCAACAGGTCCTGGAAATT | + |
|
Preference number: 4 (lower is better) Translates to: ISPQNHTSQVVNSCADLLGSQTS*QQVLEI Trigger: AATTTCCAGGACCTGTTGTCAACTTGTCTGAGATCC...GAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | AAATATAAATGTACAAACAGGATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTGGCTTCTTTTCCTCTaGGGTGGTAGGAGCTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: KYKCTNRIFLLESWAFRRWLLFL*GGRSSL Trigger: GAGGGAGCTCCTACCACCTCAGAGGAAAAGAAGCCA...CCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCTGTTTGTACATTTATATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | CTTTTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTCAGTTCACTTTATTCTGGATGGCTCTaGCGTTGGAAATTGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LLCPFDYCSPLGTNFSSLYSGWL*RWKLAA Trigger: AGCAGCCAATTTCCAACGTCAGAGCCATCCAGAATA...AAGTGAACTGAAATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS-3UTR CCA 90 bp | ATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCGTTGACAACAGGTCCTaGAAATTTCTTCATTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ISPQNHTSQVVNSCADLLVDNRS*KFLHSR Trigger: CCTGGAATGAAGAAATTTCCAGGACCTGTTGTCAAC...GAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | TTCTCCCTTGGAAAAACACGTCAACGAAATGCATCTCCTGATTCTAAGCATCCATCCTTCCTGTTATTCTaGATGGCTCTGACGTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: FSLGKTRQRNASPDSKHPSFLLF*MALTLE Trigger: TTCCAACGTCAGAGCCATCCAGAATAACAGGAAGGA...TGGATGCTTAGAATCAGGAGATGCATTTCGTTGACGTGTTTTTCCAAGGGAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS-3UTR TCA 90 bp | AGGATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAACTCCCATTGGAATATTaGTATTCGCCTGGATGGCTC | + |
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Preference number: 4 (lower is better) Translates to: RIFLLESWAFRRFVIIIQLPLEY*YSPGWL Trigger: GAGCCATCCAGGCGAATATCAATATTCCAATGGGAG...TTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | TTCTCCCTTGGAAAAACACGTCAACGAAATGCATCTCCTGATTCTAAGCATCCAGTTGACAACAGGTCCTaGAAATTTCTTCATTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FSLGKTRQRNASPDSKHPVDNRS*KFLHSR Trigger: CCTGGAATGAAGAAATTTCCAGGACCTGTTGTCAAC...TGGATGCTTAGAATCAGGAGATGCATTTCGTTGACGTGTTTTTCCAAGGGAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038007.10 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | AAGACCGTGGGAAGTAACTTAAAGTACTTAACATCAAAATCACTGCTTGCACGTGGATCTCAGACAAGTTaGCAACAGGTCCTGGAAATT | + |
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Preference number: 4 (lower is better) Translates to: KTVGSNLKYLTSKSLLARGSQTS*QQVLEI Trigger: AATTTCCAGGACCTGTTGTCAACTTGTCTGAGATCC...ACGTGCAAGCAGTGATTTTGATGTTAAGTACTTTAAGTTACTTCCCACGGTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR TCA 90 bp | TTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTCAGTTCACTTTTACTCCCATTGGAATATTaGTATTCGCCTTCTGTAAGG | + |
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Preference number: 4 (lower is better) Translates to: LCPFDYCSPLGTNFSSLLLPLEY*YSPSVR Trigger: CCTTACAGAAGGCGAATATCAATATTCCAATGGGAG...TAAAAGTGAACTGAAATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS-3UTR CCA 90 bp | CTTCATAAAAATCACATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGACGAAAGGCTCCCATTaGAATATTGATATTCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LHKNHISPQNHTSQVVNSTKGSH*NIDIRL Trigger: CAGGCGAATATCAATATTCCAATGGGAGCCTTTCGT...CGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGATGTGATTTTTATGAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | AGGATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAACGAAAGGCTCCCATTaGAATATTGATATTCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RIFLLESWAFRRFVIIIQTKGSH*NIDIRL Trigger: CAGGCGAATATCAATATTCCAATGGGAGCCTTTCGT...TTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | AAGACCGTGGGAAGTAACTTAAAGTACTTAACATCAAAATCACTGCTTGCACGTACGAAAGGCTCCCATTaGAATATTGATATTCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: KTVGSNLKYLTSKSLLARTKGSH*NIDIRL Trigger: CAGGCGAATATCAATATTCCAATGGGAGCCTTTCGT...ACGTGCAAGCAGTGATTTTGATGTTAAGTACTTTAAGTTACTTCCCACGGTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CCA 90 bp | GTGAACTTTTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTCAGTTACGAAAGGCTCCCATTaGAATATTGATATTCGCCTT | + |
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Preference number: 4 (lower is better) Translates to: VNFCVLSTTVHLWGQISVTKGSH*NIDIRL Trigger: AAGGCGAATATCAATATTCCAATGGGAGCCTTTCGT...AACTGAAATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAAAAGTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS-3UTR CCA 90 bp | GATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAATGTTGACAACAGGTCCTaGAAATTTCTTCATTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: DIFARVLGIQEVCDHHTNVDNRS*KFLHSR Trigger: CCTGGAATGAAGAAATTTCCAGGACCTGTTGTCAAC...ATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS CCA 90 bp | TTTCCTTCTGGGAGGCTGCCCAGCTCCCGGACGAAAGGCTCCCATTaGAATATTGATATTCGCCTGGATGGCTCTGACGTTGGAAATTGG | + |
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Preference number: 5 (lower is better) Translates to: FPSGRLPSSRTKGSH*NIDIRLDGSDVGNW Trigger: CCAATTTCCAACGTCAGAGCCATCCAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCAGCCTCCCAGAAGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038007.10 ENSMUST00000112520.2 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS TCA 90 bp | TGGGAGGCTGCCCAGCTCCCGGACGAAAGGCTCCCATTGGAATATTaGTATTCGCCTTCTGTAAGGATGAGCCGAATTTTATCCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: WEAAQLPDERLPLEY*YSPSVRMSRILSFL Trigger: CAGGAAGGATAAAATTCGGCTCATCCTTACAGAAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCAGCCTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS-3UTR CAA 90 bp | CACATCTCTCCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGTGGATGGCTCTGACGTaGGAAATTGGCTGCTTCGAC | + |
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Preference number: 5 (lower is better) Translates to: HISPQNHTSQVVNSCADLWMALT*EIGCFD Trigger: GTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCA...CAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGGAGAGATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CAA 90 bp | CCTCAAAACCACACTTCCCAGGTTGTAAATTCGTGTGCTGATTTGCTCTACAAGTGGATGGCTCTGACGTaGGAAATTGGCTGCTTCGAC | + |
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Preference number: 5 (lower is better) Translates to: PQNHTSQVVNSCADLLYKWMALT*EIGCFD Trigger: GTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCA...CTTGTAGAGCAAATCAGCACACGAATTTACAACCTGGGAAGTGTGGTTTTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS TCA 90 bp | AGGTCCTGGAAATTTCTTCATTCCAGGAATTGGCTTCTTTTCCTCTaGGGTGGTAGGAGCTCCCTCCTCAGTTTCAGGAGTACTCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: RSWKFLHSRNWLLFL*GGRSSLLSFRSTLF Trigger: AAAGAGAGTACTCCTGAAACTGAGGAGGGAGCTCCTACCACCTCAGAGGAAAAGAAGCCAATTCCTGGAATGAAGAAATTTCCAGGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038007.10 ENSMUST00000112520.2 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CAA 90 bp | TTTTTCTCCCTTGGAAAAACACGTCAACGAAATGCATCTCCTGATTCTAAGCATTGGATGGCTCTGACGTaGGAAATTGGCTGCTTCGAC | + |
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Preference number: 5 (lower is better) Translates to: FFSLGKTRQRNASPDSKHWMALT*EIGCFD Trigger: GTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCA...ATGCTTAGAATCAGGAGATGCATTTCGTTGACGTGTTTTTCCAAGGGAGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000147283.8 ENSMUST00000190091.7 |
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| CDS-3UTR CAA 90 bp | GATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAATTGGATGGCTCTGACGTaGGAAATTGGCTGCTTCGAC | + |
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Preference number: 5 (lower is better) Translates to: DIFARVLGIQEVCDHHTNWMALT*EIGCFD Trigger: GTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCA...ATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CAA 90 bp | GATATTTTTGCTAGAGTCTTGGGCATTCAGGAGGTTTGTGATCATCATACAAATGCTCCCATTGGAATATaGATATTCGCCTGGATGGCT | + |
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Preference number: 5 (lower is better) Translates to: DIFARVLGIQEVCDHHTNAPIGI*IFAWMA Trigger: AGCCATCCAGGCGAATATCAATATTCCAATGGGAGC...ATTTGTATGATGATCACAAACCTCCTGAATGCCCAAGACTCTAGCAAAAATATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038007.10 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS-3UTR CAA 90 bp | AACTTTTGTGTCCTTTCGACTACTGTTCACCTTTGGGGACAAATTTCAGTTCACGCTCCCATTGGAATATaGATATTCGCCTTCTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: NFCVLSTTVHLWGQISVHAPIGI*IFAFCK Trigger: CTTACAGAAGGCGAATATCAATATTCCAATGGGAGC...GTGAACTGAAATTTGTCCCCAAAGGTGAACAGTAGTCGAAAGGACACAAAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS CCA 72 bp | GGGAGGCTGCCCAGCTCCCGGACGAAAGGCTCCCATTaGAATATTGATATTCGCCTGGATGGCTCTGACGTT | + |
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Preference number: 6 (lower is better) Translates to: GRLPSSRTKGSH*NIDIRLDGSDV Trigger: AACGTCAGAGCCATCCAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCAGCCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038007.10 ENSMUST00000112520.2 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS CAA 90 bp | CTGGGAGGCTGCCCAGCTCCCGGACGAAAGGCTCCCATTGGAATATaGATATTCGCCTTCTGTAAGGATGAGCCGAATTTTATCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LGGCPAPGRKAPIGI*IFAFCKDEPNFILP Trigger: AGGAAGGATAAAATTCGGCTCATCCTTACAGAAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCAGCCTCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS CAA 72 bp | TGCCCAGCTCCCGGACGAAAGGCTCCCATTGGAATATaGATATTCGCCTGGATGGCTCTGACGTTGGAAATT | + |
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Preference number: 6 (lower is better) Translates to: CPAPGRKAPIGI*IFAWMALTLEI Trigger: AATTTCCAACGTCAGAGCCATCCAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038007.10 ENSMUST00000112520.2 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS CCA 72 bp | GGACGAAAGGCTCCCATTGGAATATTGATATTCGCCTaGATGGCTCTGACGTTGGAAATTGGCTGCTTCGAC | + |
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Preference number: 6 (lower is better) Translates to: GRKAPIGILIFA*MALTLEIGCFD Trigger: GTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038007.10 ENSMUST00000112520.2 ENSMUST00000112521.8 ENSMUST00000190091.7 |
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| CDS TCA 72 bp | GCCCAGCTCCCGGACGAAAGGCTCCCATTGGAATATTaGTATTCGCCTTCTGTAAGGATGAGCCGAATTTTA | + |
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Preference number: 6 (lower is better) Translates to: AQLPDERLPLEY*YSPSVRMSRIL Trigger: TAAAATTCGGCTCATCCTTACAGAAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS CAA 72 bp | TGCCCAGCTCCCGGACGAAAGGCTCCCATTGGAATATaGATATTCGCCTTCTGTAAGGATGAGCCGAATTTT | + |
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Preference number: 6 (lower is better) Translates to: CPAPGRKAPIGI*IFAFCKDEPNF Trigger: AAAATTCGGCTCATCCTTACAGAAGGCGAATATCAATATTCCAATGGGAGCCTTTCGTCCGGGAGCTGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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| CDS CCA 72 bp | GTAAGGATGAGCCGAATTTTATCCTTCCTGTTATTCTaGATGGCTCTGACGTTGGAAATTGGCTGCTTCGAC | + |
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Preference number: 6 (lower is better) Translates to: VRMSRILSFLLF*MALTLEIGCFD Trigger: GTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCAGAATAACAGGAAGGATAAAATTCGGCTCATCCTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147283.8 |
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