Pregenerated sensors for SMPDL3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019872Ensembl transcript IDs: ENSMUST00000020022.8, ENSMUST00000151623.8
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCATGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACACTGGTATCAGCATCTaGGCCTCACAAGTCACACAG | + |
|
Preference number: 2 (lower is better) Translates to: PWHPQKNQLLYCIDDKFYTGISI*ASQVTQ Trigger: CTGTGTGACTTGTGAGGCTCAGATGCTGATACCAGT...GTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGAATTTTGAATGTTACTaGTATCAGCATCTGAGCCTC | + |
|
Preference number: 2 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKNFECY*YQHLSL Trigger: GAGGCTCAGATGCTGATACCAGTAACATTCAAAATT...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| 3UTR TCA 72 bp | GTGAAGTTAATTTTGAATGTTACTGGTATCAGCATCTaGGCCTCACAAGTCACACAGAATGTCAATCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: VKLILNVTGISI*ASQVTQNVNLP Trigger: AGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAGTAACATTCAAAATTAACTTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| 3UTR CCA 72 bp | ATGTATTCAATGCGTGAAGTTAATTTTGAATGTTACTaGTATCAGCATCTGAGCCTCACAAGTCACACAGAA | + |
|
Preference number: 3 (lower is better) Translates to: MYSMREVNFECY*YQHLSLTSHTE Trigger: TTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAGTAACATTCAAAATTAACTTCACGCATTGAATACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGTGCGTGAAGTTAATTTaGAATGTTACTGGTATCAGC | + |
|
Preference number: 3 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKCVKLI*NVTGIS Trigger: GCTGATACCAGTAACATTCAAAATTAACTTCACGCA...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCGTCACGTGCCAAAACTaGCCCACAGCTGGGGCGCGA | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSVTCQN*PTAGAR Trigger: TCGCGCCCCAGCTGTGGGGCAGTTTTGGCACGTGAC...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCTCAGGTACTGGCACATaGGGTGGGCTATCCCCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSSGTGT*GGLSPV Trigger: GACAGGGGATAGCCCACCTCATGTGCCAGTACCTGA...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCGGAGAGTTCAGGTACTaGCACATGAGGTGGGCTATC | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSGEFRY*HMRWAI Trigger: GATAGCCCACCTCATGTGCCAGTACCTGAACTCTCC...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCCTTACTGGTGACTATTaGCAGCTGGTCCTGTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSLTGDY*QLVLWP Trigger: TGGCCACAGGACCAGCTGCCAATAGTCACCAGTAAG...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTGTAAGTCAGTCACGTaGCAAAACTGCCCCACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCCKSVT*QNCPTA Trigger: AGCTGTGGGGCAGTTTTGGCACGTGACTGACTTACA...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCGCCAGTAGTCATGATTaGCCAGTGCAGGGAAAACCT | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCASSHD*PVQGKP Trigger: AGGTTTTCCCTGCACTGGGCAATCATGACTACTGGC...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCCTTTGGCTGCAGATCTaGAACACTGTAGGCCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCLWLQI*NTVGLS Trigger: ACTCAGGCCTACAGTGTTGCAGATCTGCAGCCAAAG...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCATGCTGGTCACAAGTTaGACTGCTGTCATAACTCAC | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSMLVTS*TAVITH Trigger: GTGAGTTATGACAGCAGTGCAACTTGTGACCAGCAT...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | AGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCACTTCAGAATCCAGCCATTCAAACTaGTTTGCTGGGTCTGTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SLTSHTECQSSYAPSTSESSHSN*FAGSVL Trigger: CAAGACAGACCCAGCAAATCAGTTTGAATGGCTGGA...TTCTGAAGTGCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCTCCATAGAGAGCTGTTaGGTGTATTTTCCAGCCATT | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSSIESC*VYFPAI Trigger: AATGGCTGGAAAATACACTCAACAGCTCTCTATGGA...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | AGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCACTTCAGAATCACCTTTATCACGGTaGCTGTGGAGAGTTCAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SLTSHTECQSSYAPSTSESPLSR*LWRVQV Trigger: TACCTGAACTCTCCACAGGCACCGTGATAAAGGTGA...TTCTGAAGTGCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCCCATTCAAACTGATTTaGTGGGTCTGTCTTGTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSPFKLI*WVCLVQ Trigger: CTGAACAAGACAGACCCAGCAAATCAGTTTGAATGG...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCCGGAGCTGTATCTTCTaGAAATATCAAGCAGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSRSCIF*KYQAVS Trigger: AGAAACTGCTTGATATTTTCAGAAGATACAGCTCCG...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCCCACAAACACAGAATTaGGTGGATTCCCGTTTTTAT | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSPQTQN*VDSRFY Trigger: ATAAAAACGGGAATCCACTCAATTCTGTGTTTGTGG...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTGGTGTAACAGCAGGTaGCACAAACACAGAATTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCWCNSR*HKHRIE Trigger: CTCAATTCTGTGTTTGTGGCACCTGCTGTTACACCA...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCACTCCAATGTCCAGTTaGATTCTCCTTTTAGATTGG | + |
|
Preference number: 4 (lower is better) Translates to: QHLSLTSHTECQSSYAPSTPMSS*ILLLDW Trigger: CCAATCTAAAAGGAGAATCCAACTGGACATTGGAGT...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCCAGGGTCATGATGTTTaGGCCATAGTACAAGTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCQGHDV*AIVQVC Trigger: ACAAACTTGTACTATGGCCCAAACATCATGACCCTG...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | AGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCACTTCAGAAATTTCAGGAACTGCTTaGTGTCTTTGGTGGCAAATT | + |
|
Preference number: 4 (lower is better) Translates to: SLTSHTECQSSYAPSTSEISGTA*CLWWQI Trigger: AATTTGCCACCAAAGACAGCAAGCAGTTCCTGAAAT...TTCTGAAGTGCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCGGTCACAAGTTGCACTaGTGTCATAACTCACAAAAT | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCGHKLH*CHNSQN Trigger: ATTTTGTGAGTTATGACAGCAGTGCAACTTGTGACC...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCACTTGCAACTTTCTGTaGGTAAAAACCACCTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LVSASEPHKSHRMSIFLCTCNFL*VKTTFL Trigger: AAGAAAGGTGGTTTTTACTCACAGAAAGTTGCAAGT...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | CCATGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACTTATCACGGTGCCTGTaGAGAGTTCAGGTACTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PWHPQKNQLLYCIDDKFYLSRCL*RVQVLA Trigger: TGCCAGTACCTGAACTCTCCACAGGCACCGTGATAA...GTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR GCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGGTCATGATTGCCCAGTaGAGGGAAAACCTGGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKVMIAQ*RENLEV Trigger: AACCTCCAGGTTTTCCCTGCACTGGGCAATCATGAC...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGCCCCTGTCCATATCATaGAAGATGCTTCTTGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKPLSIS*KMLLVL Trigger: CAGGACAAGAAGCATCTTTCATGATATGGACAGGGG...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | CCATGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACGAAAACCTGGAGGTTTaGAAACAGGTTCTGGACAGT | + |
|
Preference number: 4 (lower is better) Translates to: PWHPQKNQLLYCIDDKFYENLEV*KQVLDS Trigger: ACTGTCCAGAACCTGTTTCCAAACCTCCAGGTTTTC...GTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCATGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGGCTTGCTGTCTTTGGTaGCAAATTGCTGAACTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKACCLW*QIAELR Trigger: CCTTAGTTCAGCAATTTGCCACCAAAGACAGCAAGC...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR TCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGGCTGACAAAATAAGTTaGTATGGAGAGTCACACAGG | + |
|
Preference number: 4 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKADKIS*YGESHR Trigger: CCTGTGTGACTCTCCATATCAACTTATTTTGTCAGC...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGTTCAAACTGATTTGCTaGGTCTGTCTTGTTCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKFKLIC*VCLVQG Trigger: ACCCTGAACAAGACAGACCCAGCAAATCAGTTTGAA...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CCA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGATTCTCCTTTTAGATTaGCTTCTGTCAAGTTCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKILLLD*LLSSSS Trigger: ACTTGAACTTGACAGAAGCCAATCTAAAAGGAGAAT...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS GCA 90 bp | GACTATTGGCAGCTGGTCCTGTGGCCAGTAGTCATGATTGCCCAGTaGAGGGAAAACCTGGAGGTTTGGAAACAGGTTCTGGACAGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: DYWQLVLWPVVMIAQ*RENLEVWKQVLDSH Trigger: ATGACTGTCCAGAACCTGTTTCCAAACCTCCAGGTTTTCCCTGCACTGGGCAATCATGACTACTGGCCACAGGACCAGCTGCCAATAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS TCA 90 bp | GACATCTCCGAAAGGCCCAGGGTTGGAGGCATTTGCGCCTTTAGATaGAGCACACACCTTGGTACGGTCATCTGTAATGTGGTAAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: DISERPRVGGICAFR*STHLGTVICNVVSR Trigger: CCTACTTACCACATTACAGATGACCGTACCAAGGTGTGTGCTTCATCTAAAGGCGCAAATGCCTCCAACCCTGGGCCTTTCGGAGATGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020022.8 ENSMUST00000151623.8 |
||
| CDS-3UTR CAA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCCGGACACCGGGATTGTaGGTCTCCTTTTGTAAAACT | + |
|
Preference number: 5 (lower is better) Translates to: QHLSLTSHTECQSSYAPSRTPGL*VSFCKT Trigger: AGTTTTACAAAAGGAGACCAACAATCCCGGTGTCCG...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 90 bp | TGGCCAGTAGTCATGATTGCCCAGTGCAGGGAAAACCTGGAGGTTTaGAAACAGGTTCTGGACAGTCATTGTCATGTTAGTGATCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: WPVVMIAQCRENLEV*KQVLDSHCHVSDHL Trigger: AAGGTGATCACTAACATGACAATGACTGTCCAGAACCTGTTTCCAAACCTCCAGGTTTTCCCTGCACTGGGCAATCATGACTACTGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | CAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCGCCATTCAAACTGATTaGCTGGGTCTGTCTTGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: QHLSLTSHTECQSSYAPSAIQTD*LGLSCS Trigger: TGAACAAGACAGACCCAGCAAATCAGTTTGAATGGC...GCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS GCA 90 bp | AAGCAGTTTCTCATTATAGTACTGCCTTATCGCCGGGGTGTCAGTTaGATAAGGGAGATAGCCCACTGGAACATGCGCTATGATGTATAC | + |
|
Preference number: 5 (lower is better) Translates to: KQFLIIVLPYRRGVS*IREIAHWNMRYDVY Trigger: GTATACATCATAGCGCATGTTCCAGTGGGCTATCTCCCTTATGCAACTGACACCCCGGCGATAAGGCAGTACTATAATGAGAAACTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | CTGGTATCAGCATCTGAGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTTCCATAGAGAGCTGTaGAGTGTATTTTCCAGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: LVSASEPHKSHRMSIFLCFHREL*SVFSSH Trigger: ATGGCTGGAAAATACACTCAACAGCTCTCTATGGAA...GCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCTCAGATGCTGATACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | AGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCACTTCAGAATCAAGCCTGGATTACTaGCAACTTTCTGTGAGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: SLTSHTECQSSYAPSTSESSLDY*QLSVSK Trigger: TTTACTCACAGAAAGTTGCAAGTAATCCAGGCTTGA...TTCTGAAGTGCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | AGCCTCACAAGTCACACAGAATGTCAATCTTCCTATGCTCCCAGCACTTCAGAATACTCCAATGTCCAGTaGGATTCTCCTTTTAGATTG | + |
|
Preference number: 5 (lower is better) Translates to: SLTSHTECQSSYAPSTSEYSNVQ*DSPFRL Trigger: CAATCTAAAAGGAGAATCCAACTGGACATTGGAGTA...TTCTGAAGTGCTGGGAGCATAGGAAGATTGACATTCTGTGTGACTTGTGAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 90 bp | GAGTCAAGACATACTCCAATGTCCAGTTGGATTCTCCTTTTAGATTaGCTTCTGTCAAGTTCAAGTAATACTGCACCATGTCCAGCAATG | + |
|
Preference number: 5 (lower is better) Translates to: ESRHTPMSSWILLLD*LLSSSSNTAPCPAM Trigger: CATTGCTGGACATGGTGCAGTATTACTTGAACTTGACAGAAGCCAATCTAAAAGGAGAATCCAACTGGACATTGGAGTATGTCTTGACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 90 bp | CTGCAACACTGTAGGCCTGAGTCAAGACATACTCCAATGTCCAGTTaGATTCTCCTTTTAGATTGGCTTCTGTCAAGTTCAAGTAATACT | + |
|
Preference number: 5 (lower is better) Translates to: LQHCRPESRHTPMSS*ILLLDWLLSSSSNT Trigger: AGTATTACTTGAACTTGACAGAAGCCAATCTAAAAGGAGAATCCAACTGGACATTGGAGTATGTCTTGACTCAGGCCTACAGTGTTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS TCA 90 bp | TCTTGTCCTGAATTCTTAATAAAATCAAAGGCTGACAAAATAAGTTaGTATGGAGAGTCACACAGGACATCTCCGAAAGGCCCAGGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SCPEFLIKSKADKIS*YGESHRTSPKGPGL Trigger: CAACCCTGGGCCTTTCGGAGATGTCCTGTGTGACTCTCCATATCAACTTATTTTGTCAGCCTTTGATTTTATTAAGAATTCAGGACAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020022.8 ENSMUST00000151623.8 |
||
| CDS-3UTR CAA 90 bp | CCATGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAGGCATATAAACTCTTaGGCTGCAGATCTGCAACAC | + |
|
Preference number: 5 (lower is better) Translates to: PWHPQKNQLLYCIDDKFYRHINS*AADLQH Trigger: GTGTTGCAGATCTGCAGCCAAAGAGTTTATATGCCT...GTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCATGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGTTTGCTGGGTCTGTCTaGTTCAGGGTCATGATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKFAGSV*FRVMMF Trigger: AAACATCATGACCCTGAACAAGACAGACCCAGCAAA...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | CCATGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACTATTTCAGGAACTGCTaGCTGTCTTTGGTGGCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: PWHPQKNQLLYCIDDKFYYFRNC*LSLVAN Trigger: ATTTGCCACCAAAGACAGCAAGCAGTTCCTGAAATA...GTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCATGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS-3UTR CAA 90 bp | TGGCATCCACAGAAAAATCAACTGCTTTATTGCATAGATGACAAGTTTTACAAGAATGCTGGTCACAAGTaGCACTGCTGTCATAACTCA | + |
|
Preference number: 5 (lower is better) Translates to: WHPQKNQLLYCIDDKFYKNAGHK*HCCHNS Trigger: TGAGTTATGACAGCAGTGCAACTTGTGACCAGCATT...CTTGTAAAACTTGTCATCTATGCAATAAAGCAGTTGATTTTTCTGTGGATGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 90 bp | CAAAATAATAATGGTAGTATTTCAGGAACTGCTTGCTGTCTTTGGTaGCAAATTGCTGAACTAAGGCATATAAACTCTTTGGCTGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: QNNNGSISGTACCLW*QIAELRHINSLAAD Trigger: ATCTGCAGCCAAAGAGTTTATATGCCTTAGTTCAGCAATTTGCCACCAAAGACAGCAAGCAGTTCCTGAAATACTACCATTATTATTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS GCA 72 bp | GTAGGGTCTAGATGTAAGTCAGTCACGTGCCAAAACTaGCCCACAGCTGGGGCGCGATCCGCCGGCGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: VGSRCKSVTCQN*PTAGARSAGAR Trigger: CCTGGCGCCGGCGGATCGCGCCCCAGCTGTGGGGCAGTTTTGGCACGTGACTGACTTACATCTAGACCCTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CAA 72 bp | GGAGAGTCACACAGGACATCTCCGAAAGGCCCAGGGTaGGAGGCATTTGCGCCTTTAGATGAAGCACACACC | + |
|
Preference number: 6 (lower is better) Translates to: GESHRTSPKGPG*EAFAPLDEAHT Trigger: GGTGTGTGCTTCATCTAAAGGCGCAAATGCCTCCAACCCTGGGCCTTTCGGAGATGTCCTGTGTGACTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020022.8 ENSMUST00000151623.8 |
||
| CDS TCA 72 bp | TCCAGAGGTCAGCCACAGCACTGTAGACCTTACTGGTaGCTATTGGCAGCTGGTCCTGTGGCCAGTAGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: SRGQPQHCRPYW*LLAAGPVASSH Trigger: ATGACTACTGGCCACAGGACCAGCTGCCAATAGTCACCAGTAAGGTCTACAGTGCTGTGGCTGACCTCTGGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS GCA 72 bp | CAGCTGGTCCTGTGGCCAGTAGTCATGATTGCCCAGTaGAGGGAAAACCTGGAGGTTTGGAAACAGGTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: QLVLWPVVMIAQ*RENLEVWKQVL Trigger: CAGAACCTGTTTCCAAACCTCCAGGTTTTCCCTGCACTGGGCAATCATGACTACTGGCCACAGGACCAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 72 bp | GTCAGCCACAGCACTGTAGACCTTACTGGTGACTATTaGCAGCTGGTCCTGTGGCCAGTAGTCATGATTGCC | + |
|
Preference number: 6 (lower is better) Translates to: VSHSTVDLTGDY*QLVLWPVVMIA Trigger: GGCAATCATGACTACTGGCCACAGGACCAGCTGCCAATAGTCACCAGTAAGGTCTACAGTGCTGTGGCTGAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS TCA 72 bp | GAAAGGCCCAGGGTTGGAGGCATTTGCGCCTTTAGATaGAGCACACACCTTGGTACGGTCATCTGTAATGTG | + |
|
Preference number: 6 (lower is better) Translates to: ERPRVGGICAFR*STHLGTVICNV Trigger: CACATTACAGATGACCGTACCAAGGTGTGTGCTTCATCTAAAGGCGCAAATGCCTCCAACCCTGGGCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020022.8 ENSMUST00000151623.8 |
||
| CDS TCA 72 bp | ATCACGGTGCCTGTGGAGAGTTCAGGTACTGGCACATaGGGTGGGCTATCCCCTGTCCATATCATGAAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: ITVPVESSGTGT*GGLSPVHIMKD Trigger: ATCTTTCATGATATGGACAGGGGATAGCCCACCTCATGTGCCAGTACCTGAACTCTCCACAGGCACCGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020022.8 ENSMUST00000151623.8 |
||
| CDS GCA 72 bp | CTCATTATAGTACTGCCTTATCGCCGGGGTGTCAGTTaGATAAGGGAGATAGCCCACTGGAACATGCGCTAT | + |
|
Preference number: 6 (lower is better) Translates to: LIIVLPYRRGVS*IREIAHWNMRY Trigger: ATAGCGCATGTTCCAGTGGGCTATCTCCCTTATGCAACTGACACCCCGGCGATAAGGCAGTACTATAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CAA 72 bp | TCTCATTATAGTACTGCCTTATCGCCGGGGTGTCAGTaGCATAAGGGAGATAGCCCACTGGAACATGCGCTA | + |
|
Preference number: 6 (lower is better) Translates to: SHYSTALSPGCQ*HKGDSPLEHAL Trigger: TAGCGCATGTTCCAGTGGGCTATCTCCCTTATGCAACTGACACCCCGGCGATAAGGCAGTACTATAATGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS TCA 72 bp | CACAAACACAGAATTGAGTGGATTCCCGTTTTTATCTaGAAGGACCATAAGGCTGTCTCTATGGGTGTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: HKHRIEWIPVFI*KDHKAVSMGVA Trigger: GGCCACACCCATAGAGACAGCCTTATGGTCCTTTCAGATAAAAACGGGAATCCACTCAATTCTGTGTTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 72 bp | GTTGAGTGTATTTTCCAGCCATTCAAACTGATTTGCTaGGTCTGTCTTGTTCAGGGTCATGATGTTTGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: VECIFQPFKLIC*VCLVQGHDVWA Trigger: GGCCCAAACATCATGACCCTGAACAAGACAGACCCAGCAAATCAGTTTGAATGGCTGGAAAATACACTCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CAA 90 bp | TGCTGTCTTTGGTGGCAAATTGCTGAACTAAGGCATATAAACTCTTaGGCTGCAGATCTGCAACACTGTAGGCCTGAGTCAAGACATACT | + |
|
Preference number: 6 (lower is better) Translates to: CCLWWQIAELRHINS*AADLQHCRPESRHT Trigger: AGTATGTCTTGACTCAGGCCTACAGTGTTGCAGATCTGCAGCCAAAGAGTTTATATGCCTTAGTTCAGCAATTTGCCACCAAAGACAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS GCA 72 bp | GCTGTTGAGTGTATTTTCCAGCCATTCAAACTGATTTaGTGGGTCTGTCTTGTTCAGGGTCATGATGTTTGG | + |
|
Preference number: 6 (lower is better) Translates to: AVECIFQPFKLI*WVCLVQGHDVW Trigger: CCAAACATCATGACCCTGAACAAGACAGACCCAGCAAATCAGTTTGAATGGCTGGAAAATACACTCAACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 72 bp | AGTGCAGGGAAAACCTGGAGGTTTGGAAACAGGTTCTaGACAGTCATTGTCATGTTAGTGATCACCTTTATC | + |
|
Preference number: 6 (lower is better) Translates to: SAGKTWRFGNRF*TVIVMLVITFI Trigger: GATAAAGGTGATCACTAACATGACAATGACTGTCCAGAACCTGTTTCCAAACCTCCAGGTTTTCCCTGCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS TCA 72 bp | TTCAGGAACTGCTTGCTGTCTTTGGTGGCAAATTGCTaGACTAAGGCATATAAACTCTTTGGCTGCAGATCT | + |
|
Preference number: 6 (lower is better) Translates to: FRNCLLSLVANC*TKAYKLFGCRS Trigger: AGATCTGCAGCCAAAGAGTTTATATGCCTTAGTTCAGCAATTTGCCACCAAAGACAGCAAGCAGTTCCTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 72 bp | TGTAGGCCTGAGTCAAGACATACTCCAATGTCCAGTTaGATTCTCCTTTTAGATTGGCTTCTGTCAAGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: CRPESRHTPMSS*ILLLDWLLSSS Trigger: TGAACTTGACAGAAGCCAATCTAAAAGGAGAATCCAACTGGACATTGGAGTATGTCTTGACTCAGGCCTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 72 bp | CATACTCCAATGTCCAGTTGGATTCTCCTTTTAGATTaGCTTCTGTCAAGTTCAAGTAATACTGCACCATGT | + |
|
Preference number: 6 (lower is better) Translates to: HTPMSSWILLLD*LLSSSSNTAPC Trigger: ACATGGTGCAGTATTACTTGAACTTGACAGAAGCCAATCTAAAAGGAGAATCCAACTGGACATTGGAGTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS CCA 72 bp | AATGGTAGTATTTCAGGAACTGCTTGCTGTCTTTGGTaGCAAATTGCTGAACTAAGGCATATAAACTCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: NGSISGTACCLW*QIAELRHINSL Trigger: CAAAGAGTTTATATGCCTTAGTTCAGCAATTTGCCACCAAAGACAGCAAGCAGTTCCTGAAATACTACCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||
| CDS TCA 72 bp | GAATTCTTAATAAAATCAAAGGCTGACAAAATAAGTTaGTATGGAGAGTCACACAGGACATCTCCGAAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: EFLIKSKADKIS*YGESHRTSPKG Trigger: GCCTTTCGGAGATGTCCTGTGTGACTCTCCATATCAACTTATTTTGTCAGCCTTTGATTTTATTAAGAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020022.8 ENSMUST00000151623.8 |
||
| CDS CCA 72 bp | AATAATGGTAGTATTTCAGGAACTGCTTGCTGTCTTTaGTGGCAAATTGCTGAACTAAGGCATATAAACTCT | + |
|
Preference number: 6 (lower is better) Translates to: NNGSISGTACCL*WQIAELRHINS Trigger: AGAGTTTATATGCCTTAGTTCAGCAATTTGCCACCAAAGACAGCAAGCAGTTCCTGAAATACTACCATTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020022.8 |
||