Pregenerated sensors for SMPD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071724Ensembl transcript IDs: ENSMUST00000163991.4, ENSMUST00000171192.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGTGGAGTCCAGGGAAGAGCAGACTCAGCAGCAGGCCACCTTGCTaGCAGACATCCCACAGACTTGTTCTCCCACCTACCCAGCAGCAG | + |
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Preference number: 1 (lower is better) Translates to: LWSPGKSRLSSRPPC*QTSHRLVLPPTQQQ Trigger: CTGCTGCTGGGTAGGTGGGAGAACAAGTCTGTGGGATGTCTGTCAGCAAGGTGGCCTGCTGCTGAGTCTGCTCTTCCCTGGACTCCACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR TCA 90 bp | GCTGTTCCTGGCAAACGCCTAGCCGGCAGGGGTCCTGAAAGCAGCTaGAGAGTTTATGGCCCTGCTCCTTGGCATGATCTTGGGAGCAGT | + |
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Preference number: 1 (lower is better) Translates to: AVPGKRLAGRGPESS*RVYGPAPWHDLGSS Trigger: ACTGCTCCCAAGATCATGCCAAGGAGCAGGGCCATAAACTCTTCAGCTGCTTTCAGGACCCCTGCCGGCTAGGCGTTTGCCAGGAACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR CCA 90 bp | TGTCTCAGGGCCCTCCGAAGCATCTCTGGGGAGCAGGCAATGGAGTaGCGTAGCATGGAGGAATTCAAGATTGTCCCTGTGGAGTCCAGG | + |
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Preference number: 1 (lower is better) Translates to: CLRALRSISGEQAME*RSMEEFKIVPVESR Trigger: CCTGGACTCCACAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAGAGATGCTTCGGAGGGCCCTGAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR TCA 90 bp | TACAAAAATTTAATTTGGCTCCCAAACGGAAATAGGGTGGTTGAGTaGTTGTGTCTTAACTGGGACAGGGACGCAACCTGTGTTAAAACT | + |
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Preference number: 1 (lower is better) Translates to: YKNLIWLPNGNRVVE*LCLNWDRDATCVKT Trigger: AGTTTTAACACAGGTTGCGTCCCTGTCCCAGTTAAGACACAATCACTCAACCACCCTATTTCCGTTTGGGAGCCAAATTAAATTTTTGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR-3UTR CCA 90 bp | CACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACCAGAGTCGCATGGTTATTaGGTTATTGGGCTCCGCTCC | + |
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Preference number: 2 (lower is better) Translates to: HTPGGGGYGDPEDPAPPPESHGY*VIGLRS Trigger: GGAGCGGAGCCCAATAACCCAATAACCATGCGACTC...TGGTGGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR-3UTR TCA 90 bp | CCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACCACAATAAAGATCCTTTaGGTCGCATGGTTATTGGGT | + |
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Preference number: 2 (lower is better) Translates to: PHAWGWGLWRPGGPSTTTTIKIL*VAWLLG Trigger: ACCCAATAACCATGCGACTCAAAGGATCTTTATTGT...GGTGGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR-3UTR TCA 90 bp | TCAAGATTGTCCCTGTGGAGTCCAGGGAAGAGCAGACTCAGCAGCAGGCCACCTCTCCCAGGAGGACGCTaGAGGCTACAGCCTCATCAC | + |
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Preference number: 2 (lower is better) Translates to: SRLSLWSPGKSRLSSRPPLPGGR*RLQPHH Trigger: GTGATGAGGCTGTAGCCTTCAGCGTCCTCCTGGGAG...AGGTGGCCTGCTGCTGAGTCTGCTCTTCCCTGGACTCCACAGGGACAATCTTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR-3UTR CCA 90 bp | GCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCTCCACACGTGGGGGTGGGGGCTATaGAGACCCGGAGGACCCAGC | + |
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Preference number: 2 (lower is better) Translates to: ATCVKTCSSSQDAFCLHTWGWGL*RPGGPS Trigger: GCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCA...CGTGTGGAGGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR CAA 90 bp | CTGGGGAGCAGGCAATGGAGTGGCGTAGCATGGAGGAATTCAAGATaGTCCCTGTGGAGTCCAGGGAAGAGCAGACTCAGCAGCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: LGSRQWSGVAWRNSR*SLWSPGKSRLSSRP Trigger: TGGCCTGCTGCTGAGTCTGCTCTTCCCTGGACTCCACAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR-3UTR TCA 90 bp | GCCACCTTGCTGACAGACATCCCACAGACTTGTTCTCCCACCTACCCAGCAGCAAGCCGGCAGGGGTCCTaGAAGCAGCTGAAGAGTTTA | + |
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Preference number: 2 (lower is better) Translates to: ATLLTDIPQTCSPTYPAASRQGS*KQLKSL Trigger: TAAACTCTTCAGCTGCTTTCAGGACCCCTGCCGGCT...TGCTGCTGGGTAGGTGGGAGAACAAGTCTGTGGGATGTCTGTCAGCAAGGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR-3UTR TCA 90 bp | AGTGGCGTAGCATGGAGGAATTCAAGATTGTCCCTGTGGAGTCCAGGGAAGAGCCCCTGCTCCTTGGCATaGTCTTGGGAGCAGTTGTCA | + |
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Preference number: 2 (lower is better) Translates to: SGVAWRNSRLSLWSPGKSPCSLA*SWEQLS Trigger: TGACAACTGCTCCCAAGATCATGCCAAGGAGCAGGG...GCTCTTCCCTGGACTCCACAGGGACAATCTTGAATTCCTCCATGCTACGCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR-3UTR TCA 90 bp | GGCGTAGCATGGAGGAATTCAAGATTGTCCCTGTGGAGTCCAGGGAAGAGCAGAGGTCCTGAAAGCAGCTaGAGAGTTTATGGCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: GVAWRNSRLSLWSPGKSRGPESS*RVYGPA Trigger: AGCAGGGCCATAAACTCTTCAGCTGCTTTCAGGACC...TCTGCTCTTCCCTGGACTCCACAGGGACAATCTTGAATTCCTCCATGCTACGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCTCAGGAAGCAGTATGAGTaGCCCCACAATAAAGATCCT | + |
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Preference number: 2 (lower is better) Translates to: RDATCVKTCSSSQDAFCLRKQYE*PHNKDP Trigger: AGGATCTTTATTGTGGGGGCACTCATACTGCTTCCT...GAGGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR CCA 72 bp | CTCTTCTTCTCAGGACGCGTTCTGCCTCCACACGCCTaGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LFFSGRVLPPHA*GWGLWRPGGPS Trigger: GCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTGGAGGCAGAACGCGTCCTGAGAAGAAGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR TCA 72 bp | GGCTGTTCCTGGCAAACGCCTAGCCGGCAGGGGTCCTaGAAGCAGCTGAAGAGTTTATGGCCCTGCTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: GCSWQTPSRQGS*KQLKSLWPCSL Trigger: CAAGGAGCAGGGCCATAAACTCTTCAGCTGCTTTCAGGACCCCTGCCGGCTAGGCGTTTGCCAGGAACAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR TCA 72 bp | CCAGGGAAGAGCAGACTCAGCAGCAGGCCACCTTGCTaGCAGACATCCCACAGACTTGTTCTCCCACCTACC | + |
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Preference number: 3 (lower is better) Translates to: PGKSRLSSRPPC*QTSHRLVLPPT Trigger: GGTAGGTGGGAGAACAAGTCTGTGGGATGTCTGTCAGCAAGGTGGCCTGCTGCTGAGTCTGCTCTTCCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR TCA 72 bp | GGCAAACGCCTAGCCGGCAGGGGTCCTGAAAGCAGCTaGAGAGTTTATGGCCCTGCTCCTTGGCATGATCTT | + |
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Preference number: 3 (lower is better) Translates to: GKRLAGRGPESS*RVYGPAPWHDL Trigger: AAGATCATGCCAAGGAGCAGGGCCATAAACTCTTCAGCTGCTTTCAGGACCCCTGCCGGCTAGGCGTTTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR CCA 72 bp | GCCCTCCGAAGCATCTCTGGGGAGCAGGCAATGGAGTaGCGTAGCATGGAGGAATTCAAGATTGTCCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: ALRSISGEQAME*RSMEEFKIVPV Trigger: CACAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAGAGATGCTTCGGAGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR-3UTR CAA 90 bp | CATGGAGGAATTCAAGATTGTCCCTGTGGAGTCCAGGGAAGAGCAGACTCAGCAAGACATCCCACAGACTaGTTCTCCCACCTACCCAGC | + |
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Preference number: 3 (lower is better) Translates to: HGGIQDCPCGVQGRADSARHPTD*FSHLPS Trigger: GCTGGGTAGGTGGGAGAACAAGTCTGTGGGATGTCT...TGCTGAGTCTGCTCTTCCCTGGACTCCACAGGGACAATCTTGAATTCCTCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR TCA 72 bp | AGCAGTTGTCAAAGTTTAGATCTCCCAGGAGGACGCTaGAGGCTACAGCCTCATCACTCTGCCGGTTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: SSCQSLDLPGGR*RLQPHHSAGSQ Trigger: CTGAGAACCGGCAGAGTGATGAGGCTGTAGCCTTCAGCGTCCTCCTGGGAGATCTAAACTTTGACAACTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR TCA 72 bp | GGAAGCAGTATGAGTGCCCCCACAATAAAGATCCTTTaGGTCGCATGGTTATTGGGTTATTGGGCTCCGCTC | + |
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Preference number: 3 (lower is better) Translates to: GSSMSAPTIKIL*VAWLLGYWAPL Trigger: GAGCGGAGCCCAATAACCCAATAACCATGCGACTCAAAGGATCTTTATTGTGGGGGCACTCATACTGCTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR TCA 72 bp | AAGCAGCTGAAGAGTTTATGGCCCTGCTCCTTGGCATaGTCTTGGGAGCAGTTGTCAAAGTTTAGATCTCCC | + |
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Preference number: 3 (lower is better) Translates to: KQLKSLWPCSLA*SWEQLSKFRSP Trigger: GGGAGATCTAAACTTTGACAACTGCTCCCAAGATCATGCCAAGGAGCAGGGCCATAAACTCTTCAGCTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| CDS-3UTR GCA 90 bp | CACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACCATGGCCACACCCAGCATaGCGGAGGGGGCTGATAGCA | + |
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Preference number: 4 (lower is better) Translates to: HTPGGGGYGDPEDPAPPPWPHPA*RRGLIA Trigger: TGCTATCAGCCCCCTCCGGCATGCTGGGTGTGGCCA...TGGTGGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | CACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACCAAAGGCCTCAGGGCGTTaGGTGTCAGGGGCCAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: HTPGGGGYGDPEDPAPPPKASGR*VSGASP Trigger: AGGACTGGCCCCTGACACCCAACGCCCTGAGGCCTT...TGGTGGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | CCTCCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACCACCCCAAGCTTTTaGATCGGACGCTTGGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: PPHAWGWGLWRPGGPSTTTTPSF*IGRLVP Trigger: GGGCACCAAGCGTCCGATCCAAAAGCTTGGGGTGGT...GGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTGGAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | CACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACCAGAAAGCAACGGAAGGTaGCACGCAGCAACGGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: HTPGGGGYGDPEDPAPPPESNGR*HAATGS Trigger: GCTACCCGTTGCTGCGTGCCACCTTCCGTTGCTTTC...TGGTGGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR TCA 90 bp | CTCAGGACGCGTTCTGCCTCCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGCCCTGCTCCTTGGCATaGTCTTGGGAGCAGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LRTRSASTRLGVGAMETRPCSLA*SWEQLS Trigger: TGACAACTGCTCCCAAGATCATGCCAAGGAGCAGGG...CCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTGGAGGCAGAACGCGTCCTGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR GCA 90 bp | AGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCTCCGCTCAGCAGGCGGATaGCAGGGCTGTGGCCACACC | + |
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Preference number: 4 (lower is better) Translates to: RDATCVKTCSSSQDAFCLRSAGG*QGCGHT Trigger: GGTGTGGCCACAGCCCTGGCATCCGCCTGCTGAGCG...GAGGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | TTAACTGGGACAGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGGGGCGGCGCCAGACCTaGAGGGGCAGCCAGAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: LTGTGTQPVLKLALLLRTGRRQT*RGSQSA Trigger: TGCGCTCTGGCTGCCCCTCCAGGTCTGGCGCCGCCC...CGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCTGTCCCAGTTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR TCA 90 bp | GCTCTTCTTCTCAGGACGCGTTCTGCCTCCACACGCCTGGGGGTGGGGGCTATGTGCAAATGTGTACAATaGAGGTATCCCACGATGGGG | + |
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Preference number: 4 (lower is better) Translates to: ALLLRTRSASTRLGVGAMCKCVQ*RYPTMG Trigger: CCCCATCGTGGGATACCTTCATTGTACACATTTGCA...CATAGCCCCCACCCCCAGGCGTGTGGAGGCAGAACGCGTCCTGAGAAGAAGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR TCA 90 bp | ATGAGTACCGCCGCGCCCAGGAAGCAGTATGAGTGCCCCCACAATAAAGATCCTCTCCCAGGAGGACGCTaGAGGCTACAGCCTCATCAC | + |
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Preference number: 4 (lower is better) Translates to: MSTAAPRKQYECPHNKDPLPGGR*RLQPHH Trigger: GTGATGAGGCTGTAGCCTTCAGCGTCCTCCTGGGAG...AGGATCTTTATTGTGGGGGCACTCATACTGCTTCCTGGGCGCGGCGGTACTCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR CAA 72 bp | GAGTCCAGGGAAGAGCAGACTCAGCAGCAGGCCACCTaGCTGACAGACATCCCACAGACTTGTTCTCCCACC | + |
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Preference number: 4 (lower is better) Translates to: ESREEQTQQQAT*LTDIPQTCSPT Trigger: GGTGGGAGAACAAGTCTGTGGGATGTCTGTCAGCAAGGTGGCCTGCTGCTGAGTCTGCTCTTCCCTGGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| CDS-3UTR CCA 90 bp | ACTCAGCAGCAGGCCACCTTGCTGACAGACATCCCACAGACTTGTTCTCCCACCCACCGGGCCCAGATTTaGTACCAAGACACGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: TQQQATLLTDIPQTCSPTHRAQI*YQDTHK Trigger: CTTGTGCGTGTCTTGGTACCAAATCTGGGCCCGGTG...GGTGGGAGAACAAGTCTGTGGGATGTCTGTCAGCAAGGTGGCCTGCTGCTGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| CDS-3UTR CCA 90 bp | GGCGTAGCATGGAGGAATTCAAGATTGTCCCTGTGGAGTCCAGGGAAGAGCAGAGAAAGCAACGGAAGGTaGCACGCAGCAACGGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GVAWRNSRLSLWSPGKSRESNGR*HAATGS Trigger: GCTACCCGTTGCTGCGTGCCACCTTCCGTTGCTTTC...TCTGCTCTTCCCTGGACTCCACAGGGACAATCTTGAATTCCTCCATGCTACGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| 3UTR CAA 72 bp | AGGCAATGGAGTGGCGTAGCATGGAGGAATTCAAGATaGTCCCTGTGGAGTCCAGGGAAGAGCAGACTCAGC | + |
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Preference number: 4 (lower is better) Translates to: RQWSGVAWRNSR*SLWSPGKSRLS Trigger: GCTGAGTCTGCTCTTCCCTGGACTCCACAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171192.2 |
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| CDS-3UTR TCA 90 bp | ACAGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCAGCCGGCAGGGGTCCTaGAAGCAGCTGAAGAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: TGTQPVLKLALLLRTRSASRQGS*KQLKSL Trigger: TAAACTCTTCAGCTGCTTTCAGGACCCCTGCCGGCT...GGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR TCA 90 bp | AGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCTCGGTCCTGAAAGCAGCTaGAGAGTTTATGGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RDATCVKTCSSSQDAFCLGPESS*RVYGPA Trigger: AGCAGGGCCATAAACTCTTCAGCTGCTTTCAGGACC...GAGGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | ACAGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCGAGCAGGCAATGGAGTaGCGTAGCATGGAGGAATTC | + |
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Preference number: 4 (lower is better) Translates to: TGTQPVLKLALLLRTRSAEQAME*RSMEEF Trigger: GAATTCCTCCATGCTACGCCACTCCATTGCCTGCTC...GGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | TTAACTGGGACAGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCACCGGGCCCAGATTTaGTACCAAGACACGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: LTGTGTQPVLKLALLLRTHRAQI*YQDTHK Trigger: CTTGTGCGTGTCTTGGTACCAAATCTGGGCCCGGTG...CGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCTGTCCCAGTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| 3UTR CAA 72 bp | AGGAAGCAGTATGAGTGCCCCCACAATAAAGATCCTTaGAGTCGCATGGTTATTGGGTTATTGGGCTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: RKQYECPHNKDP*SRMVIGLLGSA Trigger: AGCGGAGCCCAATAACCCAATAACCATGCGACTCAAAGGATCTTTATTGTGGGGGCACTCATACTGCTTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CCA 90 bp | TTAACTGGGACAGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGTGGAGTGGCGTAGCATaGAGGAATTCAAGATTGTCC | + |
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Preference number: 4 (lower is better) Translates to: LTGTGTQPVLKLALLLRTWSGVA*RNSRLS Trigger: GGACAATCTTGAATTCCTCCATGCTACGCCACTCCA...CGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCTGTCCCAGTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CAA 90 bp | CTCCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCACCACCACAGGGGCCAGTCCTCTaGGGGCACTGGGCTCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: LHTPGGGGYGDPEDPAPPQGPVL*GHWAPS Trigger: CGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTG...TGGTGGTGCTGGGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTGGAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 90 bp | AAAGACAAAGCAGCGCCGGCGCTCAGCAGGCGGATGCCAGGGCTGTaGCCACACCCAGCATGCCGGAGGGGGCTGATAGCAGAAGGGGCG | + |
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Preference number: 5 (lower is better) Translates to: KDKAAPALSRRMPGL*PHPACRRGLIAEGA Trigger: CGCCCCTTCTGCTATCAGCCCCCTCCGGCATGCTGGGTGTGGCCACAGCCCTGGCATCCGCCTGCTGAGCGCCGGCGCTGCTTTGTCTTT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 90 bp | GGGCTTGCAGCACTGGGTTCGGGAAAGGTGAAGGCCTCAGGGCGTTaGGTGTCAGGGGCCAGTCCTCTTGGGGCACTGGGCTCCTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: GLAALGSGKVKASGR*VSGASPLGALGSFA Trigger: GGCGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCCCTGAGGCCTTCACCTTTCCCGAACCCAGTGCTGCAAGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CAA 90 bp | ACGCGTTCTGCCTCCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCTTTTGGATCGGACGCTaGGTGCCCAGCAGCCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: TRSASTRLGVGAMETRRTFWIGR*VPSSPA Trigger: TGCTGGGCTGCTGGGCACCAAGCGTCCGATCCAAAA...GGTCCTCCGGGTCTCCATAGCCCCCACCCCCAGGCGTGTGGAGGCAGAACGCGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 90 bp | AGGTATCCCACGATGGGGTGCCCGTCCACGATGCCTAGCTGCGCCTaGACTGATAGTAGACCTTTGGAGGCCATGGCGTCCTCGCGACGA | + |
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Preference number: 5 (lower is better) Translates to: RYPTMGCPSTMPSCA*TDSRPLEAMASSRR Trigger: TCGTCGCGAGGACGCCATGGCCTCCAAAGGTCTACTATCAGTCCAGGCGCAGCTAGGCATCGTGGACGGGCACCCCATCGTGGGATACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS GCA 90 bp | TGCCAGGACTTTGAACCACCCCAAGCTTTTGGATCGGACGCTTGGTaGCCAGCAGCCCAGCAACTGGTCCAGGGACCAGTAAGTCGGGAA | + |
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Preference number: 5 (lower is better) Translates to: CQDFEPPQAFGSDAW*PAAQQLVQGPVSRE Trigger: TTCCCGACTTACTGGTCCCTGGACCAGTTGCTGGGCTGCTGGGCACCAAGCGTCCGATCCAAAAGCTTGGGGTGGTTCAAAGTCCTGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 90 bp | CCCTCCGAAGCATCTCTGGGGAGCAGGCAATGGAGTGGCGTAGCATaGAGGAATTCAAGATTGTCCCTAAGGCCCAGGGCTGTTCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: PSEASLGSRQWSGVA*RNSRLSLRPRAVPG Trigger: GCCAGGAACAGCCCTGGGCCTTAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAGAGATGCTTCGGAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 90 bp | TGTCTCAGGGCCCTCCGAAGCATCTCTGGGGAGCAGGCAATGGAGTaGCGTAGCATGGAGGAATTCAAGATTGTCCCTAAGGCCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: CLRALRSISGEQAME*RSMEEFKIVPKAQG Trigger: GCCCTGGGCCTTAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAGAGATGCTTCGGAGGGCCCTGAGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS-3UTR CAA 90 bp | AGGGACGCAACCTGTGTTAAAACTTGCTCTTCTTCTCAGGACGCGTTCTGCCTCGAAGGCCTCAGGGCGTaGGGTGTCAGGGGCCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: RDATCVKTCSSSQDAFCLEGLRA*GVRGQS Trigger: GGACTGGCCCCTGACACCCAACGCCCTGAGGCCTTC...GAGGCAGAACGCGTCCTGAGAAGAAGAGCAAGTTTTAACACAGGTTGCGTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS TCA 90 bp | CCTACAGCCTCGGCGCGCTGCAGGCTGTGCGACAGGTTGTTAAAATaGGCCAGCCCGTGGGGCAATAGGCACAGATTAGCAGTGAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: PTASARCRLCDRLLK*ASPWGNRHRLAVRK Trigger: CTTTCTCACTGCTAATCTGTGCCTATTGCCCCACGGGCTGGCTCATTTTAACAACCTGTCGCACAGCCTGCAGCGCGCCGAGGCTGTAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS TCA 90 bp | GCAACGGGTAGCGCGAGGCCAGTAGAAGCCCACTGCCCAGTACCTTaGTGTACGGCCCAGCCATTAAGCCAAATGTGCCCACATCATATA | + |
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Preference number: 5 (lower is better) Translates to: ATGSARPVEAHCPVP*CTAQPLSQMCPHHI Trigger: TATATGATGTGGGCACATTTGGCTTAATGGCTGGGCCGTACATCAAGGTACTGGGCAGTGGGCTTCTACTGGCCTCGCGCTACCCGTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163991.4 ENSMUST00000171192.2 |
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| CDS GCA 90 bp | AATGTGTACAATGAAGGTATCCCACGATGGGGTGCCCGTCCACGATaGCTAGCTGCGCCTGGACTGATAGTAGACCTTTGGAGGCCATGG | + |
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Preference number: 5 (lower is better) Translates to: NVYNEGIPRWGARPR*LAAPGLIVDLWRPW Trigger: CCATGGCCTCCAAAGGTCTACTATCAGTCCAGGCGCAGCTAGGCATCGTGGACGGGCACCCCATCGTGGGATACCTTCATTGTACACATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS TCA 90 bp | CAGCGAATATGTCCATCCTCAACGGGTGCATGCAAATGTGTACAATaGAGGTATCCCACGATGGGGTGCCCGTCCACGATGCCTAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: QRICPSSTGACKCVQ*RYPTMGCPSTMPSC Trigger: GCAGCTAGGCATCGTGGACGGGCACCCCATCGTGGGATACCTTCATTGTACACATTTGCATGCACCCGTTGAGGATGGACATATTCGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS GCA 72 bp | AGAAAGACAAAGCAGCGCCGGCGCTCAGCAGGCGGATaGCAGGGCTGTGGCCACACCCAGCATGCCGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: RKTKQRRRSAGG*QGCGHTQHAGG Trigger: CCCTCCGGCATGCTGGGTGTGGCCACAGCCCTGGCATCCGCCTGCTGAGCGCCGGCGCTGCTTTGTCTTTCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 72 bp | GGCCTCAGGGCGTTGGGTGTCAGGGGCCAGTCCTCTTaGGGCACTGGGCTCCTTCGCCGCGAAATGTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: GLRALGVRGQSS*GTGLLRREMSG Trigger: CCCTGACATTTCGCGGCGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCCCTGAGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 72 bp | GCACTGGGTTCGGGAAAGGTGAAGGCCTCAGGGCGTTaGGTGTCAGGGGCCAGTCCTCTTGGGGCACTGGGC | + |
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Preference number: 6 (lower is better) Translates to: ALGSGKVKASGR*VSGASPLGALG Trigger: GCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCCCTGAGGCCTTCACCTTTCCCGAACCCAGTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CAA 72 bp | AGGCCTCAGGGCGTTGGGTGTCAGGGGCCAGTCCTCTaGGGGCACTGGGCTCCTTCGCCGCGAAATGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: RPQGVGCQGPVL*GHWAPSPRNVR Trigger: CCTGACATTTCGCGGCGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCCCTGAGGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CAA 90 bp | AGGGCTTGCAGCACTGGGTTCGGGAAAGGTGAAGGCCTCAGGGCGTaGGGTGTCAGGGGCCAGTCCTCTTGGGGCACTGGGCTCCTTCGC | + |
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Preference number: 6 (lower is better) Translates to: RACSTGFGKGEGLRA*GVRGQSSWGTGLLR Trigger: GCGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCCCTGAGGCCTTCACCTTTCCCGAACCCAGTGCTGCAAGCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CAA 72 bp | AGCACTGGGTTCGGGAAAGGTGAAGGCCTCAGGGCGTaGGGTGTCAGGGGCCAGTCCTCTTGGGGCACTGGG | + |
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Preference number: 6 (lower is better) Translates to: STGFGKGEGLRA*GVRGQSSWGTG Trigger: CCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCCCTGAGGCCTTCACCTTTCCCGAACCCAGTGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 72 bp | GGCGTTGGGTGTCAGGGGCCAGTCCTCTTGGGGCACTaGGCTCCTTCGCCGCGAAATGTCAGGGAGACTCAT | + |
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Preference number: 6 (lower is better) Translates to: GVGCQGPVLLGH*APSPRNVRETH Trigger: ATGAGTCTCCCTGACATTTCGCGGCGAAGGAGCCCAGTGCCCCAAGAGGACTGGCCCCTGACACCCAACGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS TCA 72 bp | ACTGTAGAGGGCTTGCAGCACTGGGTTCGGGAAAGGTaGAGGCCTCAGGGCGTTGGGTGTCAGGGGCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: TVEGLQHWVRER*RPQGVGCQGPV Trigger: GACTGGCCCCTGACACCCAACGCCCTGAGGCCTTCACCTTTCCCGAACCCAGTGCTGCAAGCCCTCTACAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 72 bp | AGCAAAGGCAGTACTGAATGTCACCTGCTCCGCCTCTaGGCTCAGGCGACTCCCGGGTACTCTGCGGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: SKGSTECHLLRL*AQATPGYSAVG Trigger: ACCTACCGCAGAGTACCCGGGAGTCGCCTGAGCCCAGAGGCGGAGCAGGTGACATTCAGTACTGCCTTTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CAA 90 bp | CTGGGGAGCAGGCAATGGAGTGGCGTAGCATGGAGGAATTCAAGATaGTCCCTAAGGCCCAGGGCTGTTCCTGGCAAACGCCTAGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: LGSRQWSGVAWRNSR*SLRPRAVPGKRLAG Trigger: GCCGGCTAGGCGTTTGCCAGGAACAGCCCTGGGCCTTAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS GCA 72 bp | TATCCCACGATGGGGTGCCCGTCCACGATGCCTAGCTaGGCCTGGACTGATAGTAGACCTTTGGAGGCCATG | + |
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Preference number: 6 (lower is better) Translates to: YPTMGCPSTMPS*AWTDSRPLEAM Trigger: CATGGCCTCCAAAGGTCTACTATCAGTCCAGGCGCAGCTAGGCATCGTGGACGGGCACCCCATCGTGGGATA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS TCA 72 bp | AGCGCGAGGCCAGTAGAAGCCCACTGCCCAGTACCTTaGTGTACGGCCCAGCCATTAAGCCAAATGTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: SARPVEAHCPVP*CTAQPLSQMCP Trigger: TGGGCACATTTGGCTTAATGGCTGGGCCGTACATCAAGGTACTGGGCAGTGGGCTTCTACTGGCCTCGCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163991.4 ENSMUST00000171192.2 |
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| CDS GCA 72 bp | TTTGAACCACCCCAAGCTTTTGGATCGGACGCTTGGTaGCCAGCAGCCCAGCAACTGGTCCAGGGACCAGTA | + |
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Preference number: 6 (lower is better) Translates to: FEPPQAFGSDAW*PAAQQLVQGPV Trigger: TACTGGTCCCTGGACCAGTTGCTGGGCTGCTGGGCACCAAGCGTCCGATCCAAAAGCTTGGGGTGGTTCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS GCA 72 bp | AATGAAGGTATCCCACGATGGGGTGCCCGTCCACGATaGCTAGCTGCGCCTGGACTGATAGTAGACCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: NEGIPRWGARPR*LAAPGLIVDLW Trigger: CCAAAGGTCTACTATCAGTCCAGGCGCAGCTAGGCATCGTGGACGGGCACCCCATCGTGGGATACCTTCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CCA 72 bp | GCCCTCCGAAGCATCTCTGGGGAGCAGGCAATGGAGTaGCGTAGCATGGAGGAATTCAAGATTGTCCCTAAG | + |
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Preference number: 6 (lower is better) Translates to: ALRSISGEQAME*RSMEEFKIVPK Trigger: CTTAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAGAGATGCTTCGGAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS CAA 72 bp | AGGCAATGGAGTGGCGTAGCATGGAGGAATTCAAGATaGTCCCTAAGGCCCAGGGCTGTTCCTGGCAAACGC | + |
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Preference number: 6 (lower is better) Translates to: RQWSGVAWRNSR*SLRPRAVPGKR Trigger: GCGTTTGCCAGGAACAGCCCTGGGCCTTAGGGACAATCTTGAATTCCTCCATGCTACGCCACTCCATTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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| CDS TCA 72 bp | TGTCCATCCTCAACGGGTGCATGCAAATGTGTACAATaGAGGTATCCCACGATGGGGTGCCCGTCCACGATG | + |
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Preference number: 6 (lower is better) Translates to: CPSSTGACKCVQ*RYPTMGCPSTM Trigger: CATCGTGGACGGGCACCCCATCGTGGGATACCTTCATTGTACACATTTGCATGCACCCGTTGAGGATGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163991.4 |
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