Pregenerated sensors for SMPD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019822Ensembl transcript IDs: ENSMUST00000019965.13, ENSMUST00000155411.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTCTGTCGGCTGTACTCAGCATGTAGATGAGTCACGTAGGCATTaGGCACCAGTCCACTTAGACGGAGCACCAGCAGCCCCACAGACT | + |
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Preference number: 1 (lower is better) Translates to: PSVGCTQHVDESRRH*APVHLDGAPAAPQT Trigger: AGTCTGTGGGGCTGCTGGTGCTCCGTCTAAGTGGACTGGTGCTCAATGCCTACGTGACTCATCTACATGCTGAGTACAGCCGACAGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR TCA 90 bp | AATCAATCCGGATACCAGACGGAAACGGTCCCAGGTCCTGCTGGCTaGCGTAGCAGTTCTTGGGTACCATGGTACAGCCATCATCAGAGC | + |
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Preference number: 1 (lower is better) Translates to: NQSGYQTETVPGPAG*RSSSWVPWYSHHQS Trigger: GCTCTGATGATGGCTGTACCATGGTACCCAAGAACTGCTACGTCAGCCAGCAGGACCTGGGACCGTTTCCGTCTGGTATCCGGATTGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR TCA 90 bp | TCCACTCTTTCAGCAGGCAGCAGCCCAGGTCTTTGGGGTGCATATTaGGGTCTCCACACAATAGAACCACATCTGCATTCTTGGATGTGT | + |
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Preference number: 1 (lower is better) Translates to: STLSAGSSPGLWGAY*GLHTIEPHLHSWMC Trigger: ACACATCCAAGAATGCAGATGTGGTTCTATTGTGTGGAGACCTCAATATGCACCCCAAAGACCTGGGCTGCTGCCTGCTGAAAGAGTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR GCA 90 bp | TGTAGTGGTTTTCAGAGTCTCACAGCAGACGTGGAACTCAGAGACTaGCTTGTAAAGCACGTAATCAATCCGGATACCAGACGGAAACGG | + |
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Preference number: 1 (lower is better) Translates to: CSGFQSLTADVELRD*LVKHVINPDTRRKR Trigger: CCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTTTACAAGGCAGTCTCTGAGTTCCACGTCTGCTGTGAGACTCTGAAAACCACTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR TCA 90 bp | GGCCTCGTGATCAGAGAAGGGCTTGTCACTGTGAGGGTCACAGCCTGTAGTGGTCCAGGTCCTGCTGGCTaGCGTAGCAGTTCTTGGGTA | + |
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Preference number: 2 (lower is better) Translates to: GLVIREGLVTVRVTACSGPGPAG*RSSSWV Trigger: TACCCAAGAACTGCTACGTCAGCCAGCAGGACCTGG...ACCACTACAGGCTGTGACCCTCACAGTGACAAGCCCTTCTCTGATCACGAGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CCA 90 bp | CGGAAACGGTCCCAGGTCCTGCTGGCTGACGTAGCAGTTCTTGGGTACCATGGTTGGATGTGTGGACACTaGATGAACTGGGCCAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: RKRSQVLLADVAVLGYHGWMCGH*MNWASS Trigger: GGAACTGGCCCAGTTCATCCAGTGTCCACACATCCA...ACCATGGTACCCAAGAACTGCTACGTCAGCCAGCAGGACCTGGGACCGTTTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCAGGTCCTGCTGGCTTGTGTGGACACTGGATaGACTGGGCCAGTTCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: KHVINPDTRRKRSQVLLACVDTG*TGPVPK Trigger: CTTGGGAACTGGCCCAGTTCATCCAGTGTCCACACA...AGCCAGCAGGACCTGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCAGGTCCTGCTGGCTGGACACTGGATGAACTaGGCCAGTTCCCAAGCTTGG | + |
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Preference number: 2 (lower is better) Translates to: KHVINPDTRRKRSQVLLAGHWMN*ASSQAW Trigger: CCAAGCTTGGGAACTGGCCCAGTTCATCCAGTGTCC...AGCCAGCAGGACCTGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR CAA 90 bp | TTCTTGGATGTGTGGACACTGGATGAACTGGGCCAGTTCCCAAGCTaGGGCCACACGGTGTGCAAAGTAGATGTCCTTCTGTCGGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: FLDVWTLDELGQFPS*GHTVCKVDVLLSAV Trigger: TACAGCCGACAGAAGGACATCTACTTTGCACACCGTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCCAGTGTCCACACATCCAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR CAA 90 bp | TCATGGAGCCCTGTCCACTCTTTCAGCAGGCAGCAGCCCAGGTCTTaGGGGTGCATATTGAGGTCTCCACACAATAGAACCACATCTGCA | + |
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Preference number: 2 (lower is better) Translates to: SWSPVHSFSRQQPRS*GCILRSPHNRTTSA Trigger: TGCAGATGTGGTTCTATTGTGTGGAGACCTCAATATGCACCCCAAAGACCTGGGCTGCTGCCTGCTGAAAGAGTGGACAGGGCTCCATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CCA 90 bp | AGACTGCCTTGTAAAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCAGCCAGTTCCCAAGCTTaGGCCACACGGTGTGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: RLPCKARNQSGYQTETVPASSQA*ATRCAK Trigger: CTTTGCACACCGTGTGGCCCAAGCTTGGGAACTGGC...TGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTTTACAAGGCAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGGCCTCGTGATCAGAGAAGGGCTTGTCACTGTGAGGGTCACAGCCTGTAGTCCACATCTGCATTCTTaGATGTGTGGACACTGGATG | + |
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Preference number: 2 (lower is better) Translates to: EGLVIREGLVTVRVTACSPHLHS*MCGHWM Trigger: CATCCAGTGTCCACACATCCAAGAATGCAGATGTGG...ACTACAGGCTGTGACCCTCACAGTGACAAGCCCTTCTCTGATCACGAGGCCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CCA 90 bp | GGCCTCGTGATCAGAGAAGGGCTTGTCACTGTGAGGGTCACAGCCTGTAGTGGTAGTTCTTGGGTACCATaGTACAGCCATCATCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: GLVIREGLVTVRVTACSGSSWVP*YSHHQS Trigger: GCTCTGATGATGGCTGTACCATGGTACCCAAGAACT...ACCACTACAGGCTGTGACCCTCACAGTGACAAGCCCTTCTCTGATCACGAGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR CAA 90 bp | GTCCACTCTTTCAGCAGGCAGCAGCCCAGGTCTTTGGGGTGCATATaGAGGTCTCCACACAATAGAACCACATCTGCATTCTTGGATGTG | + |
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Preference number: 2 (lower is better) Translates to: VHSFSRQQPRSLGCI*RSPHNRTTSAFLDV Trigger: CACATCCAAGAATGCAGATGTGGTTCTATTGTGTGGAGACCTCAATATGCACCCCAAAGACCTGGGCTGCTGCCTGCTGAAAGAGTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR GCA 90 bp | AGACTGCCTTGTAAAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCACCCAGGTCTTTGGGGTaGATATTGAGGTCTCCACAC | + |
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Preference number: 2 (lower is better) Translates to: RLPCKARNQSGYQTETVPPRSLG*ILRSPH Trigger: GTGTGGAGACCTCAATATGCACCCCAAAGACCTGGG...TGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTTTACAAGGCAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR GCA 90 bp | GTAGAGGGGGCAAAGGAAATGCTGCTTACCACAGGCAGTACAGGGGTCTTCCTGGTGGAACTCAGAGACTaGCTTGTAAAGCACGTAATC | + |
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Preference number: 2 (lower is better) Translates to: VEGAKEMLLTTGSTGVFLVELRD*LVKHVI Trigger: GATTACGTGCTTTACAAGGCAGTCTCTGAGTTCCAC...CAGGAAGACCCCTGTACTGCCTGTGGTAAGCAGCATTTCCTTTGCCCCCTCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTTGGGTACCATGGTACAGCCATCATCAGAGCCCTTAAAGTCCTCAGTCTCATTGGGCCACACGGTGTaGAAAGTAGATGTCCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: FLGTMVQPSSEPLKSSVSLGHTV*KVDVLL Trigger: CAGAAGGACATCTACTTTGCACACCGTGTGGCCCAA...TGAGACTGAGGACTTTAAGGGCTCTGATGATGGCTGTACCATGGTACCCAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CCA 90 bp | GTAGCAGTTCTTGGGTACCATGGTACAGCCATCATCAGAGCCCTTAAAGTCCTCTCAACGAAAGCATCATaGAGCCCTGTCCACTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: VAVLGYHGTAIIRALKVLSTKAS*SPVHSF Trigger: GAAAGAGTGGACAGGGCTCCATGATGCTTTCGTTGA...GAGGACTTTAAGGGCTCTGATGATGGCTGTACCATGGTACCCAAGAACTGCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR TCA 90 bp | GTAGCAGTTCTTGGGTACCATGGTACAGCCATCATCAGAGCCCTTAAAGTCCTCCTTTGGGGTGCATATTaGGGTCTCCACACAATAGAA | + |
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Preference number: 2 (lower is better) Translates to: VAVLGYHGTAIIRALKVLLWGAY*GLHTIE Trigger: TTCTATTGTGTGGAGACCTCAATATGCACCCCAAAG...GAGGACTTTAAGGGCTCTGATGATGGCTGTACCATGGTACCCAAGAACTGCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR TCA 72 bp | GGATACCAGACGGAAACGGTCCCAGGTCCTGCTGGCTaGCGTAGCAGTTCTTGGGTACCATGGTACAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: GYQTETVPGPAG*RSSSWVPWYSH Trigger: ATGGCTGTACCATGGTACCCAAGAACTGCTACGTCAGCCAGCAGGACCTGGGACCGTTTCCGTCTGGTATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR TCA 72 bp | GGCTGTACTCAGCATGTAGATGAGTCACGTAGGCATTaGGCACCAGTCCACTTAGACGGAGCACCAGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: GCTQHVDESRRH*APVHLDGAPAA Trigger: GGCTGCTGGTGCTCCGTCTAAGTGGACTGGTGCTCAATGCCTACGTGACTCATCTACATGCTGAGTACAGCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CAA 90 bp | GGGGCAAAGGAAATGCTGCTTACCACAGGCAGTACAGGGGTCTTCCTGAGGGGGACCACATCTGCATTCTaGGATGTGTGGACACTGGAT | + |
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Preference number: 3 (lower is better) Translates to: GAKEMLLTTGSTGVFLRGTTSAF*DVWTLD Trigger: ATCCAGTGTCCACACATCCAAGAATGCAGATGTGGT...CCCCCTCAGGAAGACCCCTGTACTGCCTGTGGTAAGCAGCATTTCCTTTGCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CAA 90 bp | AGACTGCCTTGTAAAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCACAGCAGCCCAGGTCTTaGGGGTGCATATTGAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: RLPCKARNQSGYQTETVPQQPRS*GCILRS Trigger: AGACCTCAATATGCACCCCAAAGACCTGGGCTGCTG...TGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTTTACAAGGCAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR TCA 72 bp | TCAGCAGGCAGCAGCCCAGGTCTTTGGGGTGCATATTaGGGTCTCCACACAATAGAACCACATCTGCATTCT | + |
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Preference number: 3 (lower is better) Translates to: SAGSSPGLWGAY*GLHTIEPHLHS Trigger: AGAATGCAGATGTGGTTCTATTGTGTGGAGACCTCAATATGCACCCCAAAGACCTGGGCTGCTGCCTGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR-3UTR CAA 90 bp | AGTAGAGGGGGCAAAGGAAATGCTGCTTACCACAGGCAGTACAGGGGTCTTCCTTCTTTGGGGTGCATATaGAGGTCTCCACACAATAGA | + |
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Preference number: 3 (lower is better) Translates to: SRGGKGNAAYHRQYRGLPSLGCI*RSPHNR Trigger: TCTATTGTGTGGAGACCTCAATATGCACCCCAAAGA...AGGAAGACCCCTGTACTGCCTGTGGTAAGCAGCATTTCCTTTGCCCCCTCTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR GCA 72 bp | TTTCAGAGTCTCACAGCAGACGTGGAACTCAGAGACTaGCTTGTAAAGCACGTAATCAATCCGGATACCAGA | + |
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Preference number: 3 (lower is better) Translates to: FQSLTADVELRD*LVKHVINPDTR Trigger: TCTGGTATCCGGATTGATTACGTGCTTTACAAGGCAGTCTCTGAGTTCCACGTCTGCTGTGAGACTCTGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR CAA 72 bp | GTGTGGACACTGGATGAACTGGGCCAGTTCCCAAGCTaGGGCCACACGGTGTGCAAAGTAGATGTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: VWTLDELGQFPS*GHTVCKVDVLL Trigger: CAGAAGGACATCTACTTTGCACACCGTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCCAGTGTCCACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| CDS-3UTR CCA 90 bp | GAGGGCCTCGTGATCAGAGAAGGGCTTGTCACTGTGAGGGTCACAGCCTGTAGTCTTTGCCTTAGGTACTaGAAGTCCTGCTCACTCCAC | + |
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Preference number: 4 (lower is better) Translates to: EGLVIREGLVTVRVTACSLCLRY*KSCSLH Trigger: GTGGAGTGAGCAGGACTTCCAGTACCTAAGGCAAAG...ACTACAGGCTGTGACCCTCACAGTGACAAGCCCTTCTCTGATCACGAGGCCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| CDS-3UTR TCA 90 bp | GGGGCAAAGGAAATGCTGCTTACCACAGGCAGTACAGGGGTCTTCCTGAGGGGGTGGAAGATTTCCTTCTaGAGTAGTGTGCATCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: GAKEMLLTTGSTGVFLRGWKISF*SSVHLD Trigger: ATCCAGATGCACACTACTTCAGAAGGAAATCTTCCA...CCCCCTCAGGAAGACCCCTGTACTGCCTGTGGTAAGCAGCATTTCCTTTGCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR CAA 72 bp | TTCAGCAGGCAGCAGCCCAGGTCTTTGGGGTGCATATaGAGGTCTCCACACAATAGAACCACATCTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: FSRQQPRSLGCI*RSPHNRTTSAF Trigger: GAATGCAGATGTGGTTCTATTGTGTGGAGACCTCAATATGCACCCCAAAGACCTGGGCTGCTGCCTGCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| CDS-3UTR GCA 90 bp | AGACTGCCTTGTAAAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCAGTGAGCGATAGCCTTTaGCTTAGGTACTGGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: RLPCKARNQSGYQTETVPVSDSL*LRYWKS Trigger: GGACTTCCAGTACCTAAGGCAAAGGCTATCGCTCAC...TGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTTTACAAGGCAGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| 3UTR CAA 72 bp | TTGAGGTCTCCACACAATAGAACCACATCTGCATTCTaGGATGTGTGGACACTGGATGAACTGGGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LRSPHNRTTSAF*DVWTLDELGQF Trigger: GAACTGGCCCAGTTCATCCAGTGTCCACACATCCAAGAATGCAGATGTGGTTCTATTGTGTGGAGACCTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| CDS GCA 90 bp | GGCTCTGAGCCTCGGTCCTGGGTCTCCGTTTCCCTTGTCAGAACGTaGAGCATCTCAGCCTGGGCCCGACATAAGCCCTTGGCCTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: GSEPRSWVSVSLVRT*SISAWARHKPLASC Trigger: GCAGGAGGCCAAGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAAGGGAAACGGAGACCCAGGACCGAGGCTCAGAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS CCA 90 bp | TTGTCAGAACGTGCAGCATCTCAGCCTGGGCCCGACATAAGCCCTTaGCCTCCTGCTTGTGGAAGAGGTAGACTGCACCTGCTACCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LSERAASQPGPDISP*PPACGRGRLHLLPA Trigger: TGCTGGTAGCAGGTGCAGTCTACCTCTTCCACAAGCAGGAGGCCAAGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS GCA 90 bp | CCAGATCAAAGTTTTCCAAGTTCAGAAAGTCTCCCAAGCGCTTCATaGGGTCCGCCCTATGTTTGCTCAGGTAGGGGATGTCCCAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: PDQSFPSSESLPSAS*GPPYVCSGRGCPSS Trigger: ACTGCTGGGACATCCCCTACCTGAGCAAACATAGGGCGGACCGCATGAAGCGCTTGGGAGACTTTCTGAACTTGGAAAACTTTGATCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019965.13 ENSMUST00000155411.8 |
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| CDS-3UTR CAA 90 bp | CCTTGTAAAGCACGTAATCAATCCGGATACCAGACGGAAACGGTCCCAGGTCCTGGGATGTCCCAGCAGTaGAGATTGAAAACTCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: PCKARNQSGYQTETVPGPGMSQQ*RLKTLS Trigger: GCTGAGAGTTTTCAATCTCAACTGCTGGGACATCCC...AGGACCTGGGACCGTTTCCGTCTGGTATCCGGATTGATTACGTGCTTTACAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155411.8 |
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| CDS CAA 72 bp | GAGGCTCTGAGCCTCGGTCCTGGGTCTCCGTTTCCCTaGTCAGAACGTGCAGCATCTCAGCCTGGGCCCGAC | + |
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Preference number: 6 (lower is better) Translates to: EALSLGPGSPFP*SERAASQPGPD Trigger: GTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAAGGGAAACGGAGACCCAGGACCGAGGCTCAGAGCCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS CAA 90 bp | AGGCTAGGTGAGGCTCTGAGCCTCGGTCCTGGGTCTCCGTTTCCCTaGTCAGAACGTGCAGCATCTCAGCCTGGGCCCGACATAAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: RLGEALSLGPGSPFP*SERAASQPGPDISP Trigger: AGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAAGGGAAACGGAGACCCAGGACCGAGGCTCAGAGCCTCACCTAGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS TCA 72 bp | CTAGCCCCAGCTCTGTCCTGGCCTCCCTTAGCACGCTaGTCAAATCGGACCTTTCCAGTGGGCCACAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: LAPALSWPPLAR*SNRTFPVGHRQ Trigger: CTGCCTGTGGCCCACTGGAAAGGTCCGATTTGATCAGCGTGCTAAGGGAGGCCAGGACAGAGCTGGGGCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS GCA 72 bp | CCTCGGTCCTGGGTCTCCGTTTCCCTTGTCAGAACGTaGAGCATCTCAGCCTGGGCCCGACATAAGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: PRSWVSVSLVRT*SISAWARHKPL Trigger: CAAGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAAGGGAAACGGAGACCCAGGACCGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS CCA 72 bp | CGTGCAGCATCTCAGCCTGGGCCCGACATAAGCCCTTaGCCTCCTGCTTGTGGAAGAGGTAGACTGCACCTG | + |
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Preference number: 6 (lower is better) Translates to: RAASQPGPDISP*PPACGRGRLHL Trigger: CAGGTGCAGTCTACCTCTTCCACAAGCAGGAGGCCAAGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS CCA 72 bp | TCCGTTTCCCTTGTCAGAACGTGCAGCATCTCAGCCTaGGCCCGACATAAGCCCTTGGCCTCCTGCTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SVSLVRTCSISA*ARHKPLASCLW Trigger: CCACAAGCAGGAGGCCAAGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAAGGGAAACGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS GCA 72 bp | CTTGGCCTCCTGCTTGTGGAAGAGGTAGACTGCACCTaGTACCAGCACCAGACCCACACTGGGTATGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LGLLLVEEVDCT*YQHQTHTGYAE Trigger: CTCTGCATACCCAGTGTGGGTCTGGTGCTGGTAGCAGGTGCAGTCTACCTCTTCCACAAGCAGGAGGCCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS GCA 72 bp | GTGAGCGATAGCCTTTGCCTTAGGTACTGGAAGTCCTaGTCACTCCACACCTCCTCCAGGAGAGCCAGATCA | + |
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Preference number: 6 (lower is better) Translates to: VSDSLCLRYWKS*SLHTSSRRARS Trigger: TGATCTGGCTCTCCTGGAGGAGGTGTGGAGTGAGCAGGACTTCCAGTACCTAAGGCAAAGGCTATCGCTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019965.13 ENSMUST00000155411.8 |
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| CDS CAA 72 bp | GGATGTGTGGTGGATGAACTGGGCCAGTTCCCAAGCTaGGGCCACACGGTGTGCAAAGTAGATGTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: GCVVDELGQFPS*GHTVCKVDVLL Trigger: CAGAAGGACATCTACTTTGCACACCGTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCCACCACACATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS CAA 90 bp | TGCATTCTTGGATGTGTGGTGGATGAACTGGGCCAGTTCCCAAGCTaGGGCCACACGGTGTGCAAAGTAGATGTCCTTCTGTCGGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: CILGCVVDELGQFPS*GHTVCKVDVLLSAV Trigger: TACAGCCGACAGAAGGACATCTACTTTGCACACCGTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCCACCACACATCCAAGAATGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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| CDS CCA 72 bp | TGTAGACATGCTGGAAGATTTCCTGGATTGGGTGTTTaGAGAACACACAGAGGCCACTGCCTATCATCCCGC | + |
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Preference number: 6 (lower is better) Translates to: CRHAGRFPGLGV*RTHRGHCLSSR Trigger: GCGGGATGATAGGCAGTGGCCTCTGTGTGTTCTCCAAACACCCAATCCAGGAAATCTTCCAGCATGTCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019965.13 |
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