RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMOK3C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075598

Ensembl transcript IDs: ENSMUST00000110967.4, ENSMUST00000178402.2

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTaGATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTT +
Preference number: 1 (lower is better)
Translates to: RGCLYQLWTCFKPLL*MVFPEPIWDFIICF
Trigger: AAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR CCA 90 bp GCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATaGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTG +
Preference number: 1 (lower is better)
Translates to: AVSTSFGHALSHYSE*CSQSPSGISSFAFL
Trigger: CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR-3UTR TCA 90 bp GGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTACTGGGGGCTCTGAGTaGAGCACGCTGAACCCAGAA +
Preference number: 2 (lower is better)
Translates to: GVPRAHLGFHHLLSCPLATGGSE*STLNPE
Trigger: TTCTGGGTTCAGCGTGCTTCACTCAGAGCCCCCAGT...AGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR CAA 90 bp ACTACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTaGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGTGAAGCA +
Preference number: 2 (lower is better)
Translates to: TTLNGVPRAHLGFHH*LSCPLAGLGALSEA
Trigger: TGCTTCACTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR-3UTR TCA 90 bp TCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGGCTGAACCCAGAACATaGTGCCTTTCCACAAGGTTC +
Preference number: 2 (lower is better)
Translates to: SGISSFAFLPPGWTGGSEAEPRT*CLSTRF
Trigger: GAACCTTGTGGAAAGGCATCATGTTCTGGGTTCAGC...CTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR-3UTR GCA 90 bp TGGGCAGGCAGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTGGGATTTCATCATTTaGTTTCTTGCCCCCTGGCTG +
Preference number: 2 (lower is better)
Translates to: WAGRGAVSTSFGHALSHYWDFII*FLAPWL
Trigger: CAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCA...GTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCTGCCTGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR-3UTR GCA 90 bp AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCCTGGGCAGGCAGCATCATTTGCTTTCTTaGCCCCTGGCTGGACTGGGG +
Preference number: 2 (lower is better)
Translates to: KHLFYSQRRSLIMSLGRQHHLLS*PLAGLG
Trigger: CCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATG...CTGCCTGCCCAGGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR-3UTR TCA 90 bp TACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCTGAGTGAAGCACGCTaGACCCAGAACATGATGCCT +
Preference number: 2 (lower is better)
Translates to: YSEWCSQSPSGISSFAFLLSEAR*TQNMMP
Trigger: AGGCATCATGTTCTGGGTTCAGCGTGCTTCACTCAG...CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR TCA 72 bp CCCCTGGCTGGACTGGGGGCTCTGAGTGAAGCACGCTaGACCCAGAACATGATGCCTTTCCACAAGGTTCCC +
Preference number: 3 (lower is better)
Translates to: PLAGLGALSEAR*TQNMMPFHKVP
Trigger: GGGAACCTTGTGGAAAGGCATCATGTTCTGGGTTCAGCGTGCTTCACTCAGAGCCCCCAGTCCAGCCAGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR TCA 72 bp GCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGTaGAGCACGCTGAACCCAGAACATGATGCCTTTCCA +
Preference number: 3 (lower is better)
Translates to: AFLPPGWTGGSE*STLNPEHDAFP
Trigger: TGGAAAGGCATCATGTTCTGGGTTCAGCGTGCTTCACTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR-3UTR CAA 90 bp AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCCTGGGCAGGCAGCTGGGATTTCATCATTaGCTTTCTTGCCCCCTGGCT +
Preference number: 3 (lower is better)
Translates to: KHLFYSQRRSLIMSLGRQLGFHH*LSCPLA
Trigger: AGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAG...CTGCCTGCCCAGGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
3UTR CCA 72 bp ACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATaGTGTTCCCAGAGCCCATCTGGGATTTCATCATTT +
Preference number: 3 (lower is better)
Translates to: TSFGHALSHYSE*CSQSPSGISSF
Trigger: AAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGTCCTCGTCCAGCCCTTaGTGCCTCTGGGCCAGCCCC +
Preference number: 4 (lower is better)
Translates to: CSQSPSGISSFAFLPPGWSSSSP*CLWASP
Trigger: GGGGCTGGCCCAGAGGCATCAAGGGCTGGACGAGGA...CCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR GCA 90 bp TGGGCAGGCAGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACCTCTGGGCCAGCCCCTaGTGCGGACAGGCTTATCTG +
Preference number: 4 (lower is better)
Translates to: WAGRGAVSTSFGHALSHYLWASP*CGQAYL
Trigger: CAGATAAGCCTGTCCGCAGCAGGGGCTGGCCCAGAG...GTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCTGCCTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR GCA 90 bp TGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGTGGGCCAGCCCCTGCTaGGGACAGGCTTATCTGCTG +
Preference number: 4 (lower is better)
Translates to: CSQSPSGISSFAFLPPGWWASPC*GQAYLL
Trigger: CAGCAGATAAGCCTGTCCGCAGCAGGGGCTGGCCCA...CCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACCCTGTGAGGCGGTGCTaGGCCAGCTTCACTGTGGCA +
Preference number: 4 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDPVRRC*ASFTVA
Trigger: TGCCACAGTGAAGCTGGCCCAGCACCGCCTCACAGG...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TGGGCAGGCAGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACGTTTTGACAGCCACATaGGTGCCTGTGAGGCGGTGC +
Preference number: 4 (lower is better)
Translates to: WAGRGAVSTSFGHALSHYVLTAT*VPVRRC
Trigger: GCACCGCCTCACAGGCACTCATGTGGCTGTCAAAAC...GTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCTGCCTGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACCAGCAACAGTGGGCCTaGGTTTGGGGTTGGCCGTCA +
Preference number: 4 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDQQQWA*VWGWPS
Trigger: TGACGGCCAACCCCAAACTCAGGCCCACTGTTGCTG...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGGCTGAGGCTCTGGTGTaGCCTTGTGTGCTCTCTTCG +
Preference number: 4 (lower is better)
Translates to: SGISSFAFLPPGWTGGSEAEALV*PCVLSS
Trigger: CGAAGAGAGCACACAAGGCCACACCAGAGCCTCAGC...CTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp GTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGAGGCTTATCTGCTGCTaGGGCTCTGGTGTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: VFPEPIWDFIICFLAPWLRLICC*GSGVAL
Trigger: CAAGGCCACACCAGAGCCTCAGCAGCAGATAAGCCT...CAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACGTGGCACAGCCTCCATaGCCGATAGTCTCTAGCATC +
Preference number: 4 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDVAQPP*PIVSSI
Trigger: GATGCTAGAGACTATCGGCCATGGAGGCTGTGCCAC...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCACATGAGTGCCTGTaGGGCGGTGCTGGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: YSEWCSQSPSGISSFAFLPHECL*GGAGPA
Trigger: AGCTGGCCCAGCACCGCCTCACAGGCACTCATGTGG...CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp GGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGTCTCGGAGCTCTGCTaGCAGTCTAGAGGGAATAGA +
Preference number: 4 (lower is better)
Translates to: GVPRAHLGFHHLLSCPLAVSELC*QSRGNR
Trigger: TCTATTCCCTCTAGACTGTCAGCAGAGCTCCGAGAC...AGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACAACAAGGGAAGGGAATaGGGTCACCGATGGGTTCAC +
Preference number: 4 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDNKGRE*GHRWVH
Trigger: GTGAACCCATCGGTGACCCCATTCCCTTCCCTTGTT...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp AGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATGGTTGCCTATTGGCGGATaGCCAGGGACATGTGGGTTC +
Preference number: 4 (lower is better)
Translates to: RGAVSTSFGHALSHYSEWLPIGG*PGTCGF
Trigger: GAACCCACATGTCCCTGGTCATCCGCCAATAGGCAA...CCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp GGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTATGACCAGGGACATGTaGGTTCATTCTCTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: GVPRAHLGFHHLLSCPLAMTRDM*VHSLSC
Trigger: GCAGGAGAGAGAATGAACCCACATGTCCCTGGTCAT...AGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACACATCTGAGCTTTTCTaGCTTCTGTTGACTCCCAGG +
Preference number: 4 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDTSELF*LLLTPR
Trigger: CCTGGGAGTCAACAGAAGTCAGAAAAGCTCAGATGT...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR GCA 90 bp TCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGCCAGCCTTTTTATGCTaGAAGCATCAAACGGGATCT +
Preference number: 4 (lower is better)
Translates to: SGISSFAFLPPGWTGGSEPAFLC*KHQTGS
Trigger: AGATCCCGTTTGATGCTTGCAGCATAAAAAGGCTGG...CTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGTCGCTGCTGTTTGGCTaGACTGTGCAAAACATTGAG +
Preference number: 4 (lower is better)
Translates to: CSQSPSGISSFAFLPPGWSLLFG*TVQNIE
Trigger: CTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCGA...CCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGTCCCACAGAATAAGTTaGGTTTTTGCCCTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: CSQSPSGISSFAFLPPGWSHRIS*VFALAS
Trigger: TGAAGCCAGGGCAAAAACTCAACTTATTCTGTGGGA...CCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR GCA 90 bp TCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGTTACCAGCCTTTTTATaGTGCAAGCATCAAACGGGA +
Preference number: 4 (lower is better)
Translates to: SGISSFAFLPPGWTGGSELPAFL*CKHQTG
Trigger: TCCCGTTTGATGCTTGCAGCATAAAAAGGCTGGTAA...CTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp GTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGAGAGAGAGATGACATTTaGATGATCGGCCATCATCAG +
Preference number: 4 (lower is better)
Translates to: VPRAHLGFHHLLSCPLAGERDDI*MIGHHQ
Trigger: CTGATGATGGCCGATCATCCAAATGTCATCTCTCTC...TCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGGGGCCTAGCCCGGGTTaGCCTGTCACATTCCTTAAG +
Preference number: 4 (lower is better)
Translates to: YSEWCSQSPSGISSFAFLGPSPG*PVTFLK
Trigger: CTTAAGGAATGTGACAGGCCAACCCGGGCTAGGCCC...CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TGGGCAGGCAGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACAGATGTCTCTTTGGATaGGATACAGCAACAGAGCTT +
Preference number: 4 (lower is better)
Translates to: WAGRGAVSTSFGHALSHYRCLFG*DTATEL
Trigger: AAGCTCTGTTGCTGTATCCCATCCAAAGAGACATCT...GTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCTGCCTGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACGGTGAGATGTCTCTTTaGATGGGATACAGCAACAGA +
Preference number: 4 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDGEMSL*MGYSNR
Trigger: TCTGTTGCTGTATCCCATCCAAAGAGACATCTCACC...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp AGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATGGGAGATGACATTTGGATaGTCGGCCATCATCAGTAAG +
Preference number: 4 (lower is better)
Translates to: RGAVSTSFGHALSHYSEWEMTFG*SAIISK
Trigger: CTTACTGATGATGGCCGATCATCCAAATGTCATCTC...CCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp GTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGTTGGTCTCAATGACTTaGAGGAGAGAGATGACATTT +
Preference number: 4 (lower is better)
Translates to: VFPEPIWDFIICFLAPWLLVSMT*RREMTF
Trigger: AAATGTCATCTCTCTCCTTCAAGTCATTGAGACCAA...CAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp AGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATGGCACTTAAGAGCTGCTTaGATAATGCGCGTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: RGAVSTSFGHALSHYSEWHLRAA*IMRVLH
Trigger: ATGAAGCACGCGCATTATTCAAGCAGCTCTTAAGTG...CCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp AGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATGGGACTGTGCAAAACATTaGGCAAATGCAGGGTACACT +
Preference number: 4 (lower is better)
Translates to: RGAVSTSFGHALSHYSEWDCAKH*ANAGYT
Trigger: AGTGTACCCTGCATTTGCTCAATGTTTTGCACAGTC...CCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCCTGGGCAGGCAGCTTGAAGGAGAGAGATaGCATTTGGATGATCGGCCA +
Preference number: 4 (lower is better)
Translates to: KHLFYSQRRSLIMSLGRQLEGER*HLDDRP
Trigger: TGGCCGATCATCCAAATGTCATCTCTCTCCTTCAAG...CTGCCTGCCCAGGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR GCA 90 bp AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCCTGGGCAGGCAGCCCGATATGTCCCATTaGTTTTACAATCGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: KHLFYSQRRSLIMSLGRQPDMSH*FYNRRV
Trigger: GACCCTGCGATTGTAAAAGCAATGGGACATATCGGG...CTGCCTGCCCAGGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CCA 90 bp AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCCTGGGCAGGCAGGTTGAGTTTTTGCCCTaGCTTCACTTTGGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KHLFYSQRRSLIMSLGRQVEFLP*LHFGAE
Trigger: CTCAGCACCAAAGTGAAGCCAGGGCAAAAACTCAAC...CTGCCTGCCCAGGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp TACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGAAGGAGGCTTACATCTaGGCTTTTCTGACTTCTGTT +
Preference number: 4 (lower is better)
Translates to: YSEWCSQSPSGISSFAFLKEAYI*AFLTSV
Trigger: AACAGAAGTCAGAAAAGCTCAGATGTAAGCCTCCTT...CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR TCA 90 bp AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCCTGGGCAGGCAGCATCTTTTTCAACCATaGTATTGTCCGGTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: KHLFYSQRRSLIMSLGRQHLFQP*YCPVSG
Trigger: ACCTGAAACCGGACAATATCATGGTTGAAAAAGATG...CTGCCTGCCCAGGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS TCA 90 bp GATGCCTCTGGGCCAGCCCCTGCTGCGGACAGGCTTATCTGCTGCTaGGGCTCTGGTGTGGCCTTGTGTGCTCTCTTCGCTGCTGTTTGG +
Preference number: 5 (lower is better)
Translates to: DASGPAPAADRLICC*GSGVALCALFAAVW
Trigger: CCAAACAGCAGCGAAGAGAGCACACAAGGCCACACCAGAGCCTCAGCAGCAGATAAGCCTGTCCGCAGCAGGGGCTGGCCCAGAGGCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CCA 90 bp TGGGCCAGCCCCTGCTGCGGACAGGCTTATCTGCTGCTGAGGCTCTaGTGTGGCCTTGTGTGCTCTCTTCGCTGCTGTTTGGCTGGACTG +
Preference number: 5 (lower is better)
Translates to: WASPCCGQAYLLLRL*CGLVCSLRCCLAGL
Trigger: CAGTCCAGCCAAACAGCAGCGAAGAGAGCACACAAGGCCACACCAGAGCCTCAGCAGCAGATAAGCCTGTCCGCAGCAGGGGCTGGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CCA 90 bp CCTAGTACGGGTGCGTGTGTGGTCCATTGTGGGTGCCGTGTGGCGTaGCCTGCCGAGAACACTGGGCCAACTGACTCTTCTGTCTCTTTT +
Preference number: 5 (lower is better)
Translates to: PSTGACVVHCGCRVA*PAENTGPTDSSVSF
Trigger: AAAAGAGACAGAAGAGTCAGTTGGCCCAGTGTTCTCGGCAGGCCACGCCACACGGCACCCACAATGGACCACACACGCACCCGTACTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS GCA 90 bp TCACAAGGATCTGGGAACACCCCTGAGCCTTCTGTGACCCAGGGATaGACCATAACCTCAGCAACAGTGGGCCTGAGTTTGGGGTTGGCC +
Preference number: 5 (lower is better)
Translates to: SQGSGNTPEPSVTQG*TITSATVGLSLGLA
Trigger: GGCCAACCCCAAACTCAGGCCCACTGTTGCTGAGGTTATGGTGCATCCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGATCCTTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS-3UTR CAA 90 bp TCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGACAGACACTTGCCTATaGGCGGATGACCAGGGACAT +
Preference number: 5 (lower is better)
Translates to: SGISSFAFLPPGWTGGSETDTCL*ADDQGH
Trigger: ATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTGT...CTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CAA 90 bp TGGGCAGGCAGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTGCCCTGGCTTCACTTaGGTGCTGAGTCCAAAATCA +
Preference number: 5 (lower is better)
Translates to: WAGRGAVSTSFGHALSHYCPGFT*VLSPKS
Trigger: TGATTTTGGACTCAGCACCAAAGTGAAGCCAGGGCA...GTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCTGCCTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS GCA 90 bp TATCTGCTGCTGAGGCTCTGGTGTGGCCTTGTGTGCTCTCTTCGCTaGTGTTTGGCTGGACTGTGCAAAACATTGAGCAAATGCAGGGTA +
Preference number: 5 (lower is better)
Translates to: YLLLRLWCGLVCSLR*CLAGLCKTLSKCRV
Trigger: TACCCTGCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCGAAGAGAGCACACAAGGCCACACCAGAGCCTCAGCAGCAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CCA 90 bp GAGGCTCTGGTGTGGCCTTGTGTGCTCTCTTCGCTGCTGTTTGGCTaGACTGTGCAAAACATTGAGCAAATGCAGGGTACACTCCTAGTA +
Preference number: 5 (lower is better)
Translates to: EALVWPCVLSSLLFG*TVQNIEQMQGTLLV
Trigger: TACTAGGAGTGTACCCTGCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCGAAGAGAGCACACAAGGCCACACCAGAGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS-3UTR CAA 90 bp GTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGTCCCACAGAATAAGTaGAGTTTTTGCCCTGGCTTC +
Preference number: 5 (lower is better)
Translates to: VFPEPIWDFIICFLAPWLVPQNK*SFCPGF
Trigger: GAAGCCAGGGCAAAAACTCAACTTATTCTGTGGGAC...CAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CAA 90 bp TTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACACCCGATATGTCCCATaGCTTTTACAATCGCAGGGT +
Preference number: 5 (lower is better)
Translates to: FPEPIWDFIICFLAPWLDTRYVP*LLQSQG
Trigger: ACCCTGCGATTGTAAAAGCAATGGGACATATCGGGT...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS CCA 90 bp TTTGGGGGAGACTCTGTTCTGCCCCAGGTGAGATGTCTCTTTGGATaGGATACAGCAACAGAGCTTCCTCATCGCATTTCCTATCATCCT +
Preference number: 5 (lower is better)
Translates to: FGGDSVLPQVRCLFG*DTATELPHRISYHP
Trigger: AGGATGATAGGAAATGCGATGAGGAAGCTCTGTTGCTGTATCCCATCCAAAGAGACATCTCACCTGGGGCAGAACAGAGTCTCCCCCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS-3UTR CAA 90 bp GGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTTTCTTACTAGTACTCTaGCCACAGACAGACACTTGC +
Preference number: 5 (lower is better)
Translates to: GVPRAHLGFHHLLSCPLAFLLVL*PQTDTC
Trigger: GCAAGTGTCTGTCTGTGGCAAGAGTACTAGTAAGAA...AGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CAA 90 bp AGAGGGGCTGTCTCTACCAGCTTTGGACATGCTTTAAGCCACTACTCTGAATGGCCAATACCCCCTCTTTaGAATGGTTTTGACAGCCAC +
Preference number: 5 (lower is better)
Translates to: RGAVSTSFGHALSHYSEWPIPPL*NGFDSH
Trigger: GTGGCTGTCAAAACCATTCAAAAGAGGGGGTATTGG...CCATTCAGAGTAGTGGCTTAAAGCATGTCCAAAGCTGGTAGAGACAGCCCCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CAA 90 bp GTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTTGGTCTCAATGACTaGAAGGAGAGAGATGACATT +
Preference number: 5 (lower is better)
Translates to: VPRAHLGFHHLLSCPLAGLGLND*KERDDI
Trigger: AATGTCATCTCTCTCCTTCAAGTCATTGAGACCAAG...TCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CAA 90 bp TACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGTCTCTTCGCTGCTGTTaGGCTGGACTGTGCAAAACA +
Preference number: 5 (lower is better)
Translates to: YSEWCSQSPSGISSFAFLSLRCC*AGLCKT
Trigger: TGTTTTGCACAGTCCAGCCAAACAGCAGCGAAGAGA...CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS-3UTR CAA 90 bp TACTCTGAATGGTGTTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGTTTTCAACCATGATATaGTCCGGTTTCAGGTCCCTG +
Preference number: 5 (lower is better)
Translates to: YSEWCSQSPSGISSFAFLFSTMI*SGFRSL
Trigger: CAGGGACCTGAAACCGGACAATATCATGGTTGAAAA...CAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAACACCATTCAGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110967.4
CDS TCA 72 bp GGGCCAGCCCCTGCTGCGGACAGGCTTATCTGCTGCTaGGGCTCTGGTGTGGCCTTGTGTGCTCTCTTCGCT +
Preference number: 6 (lower is better)
Translates to: GPAPAADRLICC*GSGVALCALFA
Trigger: AGCGAAGAGAGCACACAAGGCCACACCAGAGCCTCAGCAGCAGATAAGCCTGTCCGCAGCAGGGGCTGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS TCA 72 bp GGGGGTCTGTTCTTCACAAGGATCTGGGAACACCCCTaGGCCTTCTGTGACCCAGGGATGCACCATAACCTC +
Preference number: 6 (lower is better)
Translates to: GGLFFTRIWEHP*AFCDPGMHHNL
Trigger: GAGGTTATGGTGCATCCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGATCCTTGTGAAGAACAGACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CCA 72 bp CAGACACTTGCCTATTGGCGGATGACCAGGGACATGTaGGTTCATTCTCTCTCCTGCGAAGTCCGAGACAGG +
Preference number: 6 (lower is better)
Translates to: QTLAYWRMTRDM*VHSLSCEVRDR
Trigger: CCTGTCTCGGACTTCGCAGGAGAGAGAATGAACCCACATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS TCA 72 bp ACTCTTGCCACAGACAGACACTTGCCTATTGGCGGATaGCCAGGGACATGTGGGTTCATTCTCTCTCCTGCG +
Preference number: 6 (lower is better)
Translates to: TLATDRHLPIGG*PGTCGFILSPA
Trigger: CGCAGGAGAGAGAATGAACCCACATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTGTCTGTGGCAAGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS TCA 72 bp CTCTTCGCTGCTGTTTGGCTGGACTGTGCAAAACATTaGGCAAATGCAGGGTACACTCCTAGTACGGGTGCG +
Preference number: 6 (lower is better)
Translates to: LFAAVWLDCAKH*ANAGYTPSTGA
Trigger: CGCACCCGTACTAGGAGTGTACCCTGCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCGAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CAA 90 bp ACACTGGGCCAACTGACTCTTCTGTCTCTTTTCTTACTAGTACTCTaGCCACAGACAGACACTTGCCTATTGGCGGATGACCAGGGACAT +
Preference number: 6 (lower is better)
Translates to: TLGQLTLLSLFLLVL*PQTDTCLLADDQGH
Trigger: ATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTGTCTGTGGCAAGAGTACTAGTAAGAAAAGAGACAGAAGAGTCAGTTGGCCCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CAA 72 bp CTCAGACATGATAAGGATGCACCAATACCCCCTCTTTaGAATGGTTTTGACAGCCACATGAGTGCCTGTGAG +
Preference number: 6 (lower is better)
Translates to: LRHDKDAPIPPL*NGFDSHMSACE
Trigger: CTCACAGGCACTCATGTGGCTGTCAAAACCATTCAAAAGAGGGGGTATTGGTGCATCCTTATCATGTCTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CAA 72 bp CCACAGAATAAGTTGAGTTTTTGCCCTGGCTTCACTTaGGTGCTGAGTCCAAAATCAATGATCTTCACTTTC +
Preference number: 6 (lower is better)
Translates to: PQNKLSFCPGFT*VLSPKSMIFTF
Trigger: GAAAGTGAAGATCATTGATTTTGGACTCAGCACCAAAGTGAAGCCAGGGCAAAAACTCAACTTATTCTGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2
CDS CAA 72 bp CATAATGAGGTATACTTTCTTCTTGGTCTCAATGACTaGAAGGAGAGAGATGACATTTGGATGATCGGCCAT +
Preference number: 6 (lower is better)
Translates to: HNEVYFLLGLND*KERDDIWMIGH
Trigger: ATGGCCGATCATCCAAATGTCATCTCTCTCCTTCAAGTCATTGAGACCAAGAAGAAAGTATACCTCATTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110967.4
ENSMUST00000178402.2