Pregenerated sensors for SMOK3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079156Ensembl transcript IDs: ENSMUST00000100537.3, ENSMUST00000166206.9
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTCTCTATCAGCTTTGGACATGCTTTAAGCCACTTCTCTGAATGGTaGTCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCC | + |
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Preference number: 1 (lower is better) Translates to: VSISFGHALSHFSEW*SQSPSGISSFAFLP Trigger: GGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGATCACCATTCAGAGAAGTGGCTTAAAGCATGTCCAAAGCTGATAGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| 3UTR TCA 72 bp | AGCTTTGGACATGCTTTAAGCCACTTCTCTGAATGGTaGTCCCAGAGCCCATCTGGGATTTCATCATTTGCT | + |
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Preference number: 3 (lower is better) Translates to: SFGHALSHFSEW*SQSPSGISSFA Trigger: AGCAAATGATGAAATCCCAGATGGGCTCTGGGATCACCATTCAGAGAAGTGGCTTAAAGCATGTCCAAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | TGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGGACATGCTTTAAGCCACTTCCCACGTGAGTGCCTGTaGGGCGGTGCTGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: WAGRGAVSISFGHALSHFPRECL*GGAGPA Trigger: AGCTGGCCCAGCACCGCCTCACAGGCACTCACGTGG...GAAGTGGCTTAAAGCATGTCCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | TGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGGACATGCTTTAAGCCACTTCGGATCTGAGCTTTTCTaGCTTCTGTTGACTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: WAGRGAVSISFGHALSHFGSELF*LLLTPR Trigger: CCTGGGAGTCAACAGAAGTCAGAAAAGCTCAGATCC...GAAGTGGCTTAAAGCATGTCCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | ATCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACGTCTTGGAGCTCTGCTaGCAGTCTAGAGGGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: IPEPIWDFIICFLAPWLDVLELC*QSRGNR Trigger: TCTATTCCCTCTAGACTGTCAGCAGAGCTCCAAGAC...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | GTGATCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGTCTTGGAGCTCTGCTaGCAGTCTAGAGGGAATAGA | + |
|
Preference number: 4 (lower is better) Translates to: VIPEPIWDFIICFLAPWLVLELC*QSRGNR Trigger: TCTATTCCCTCTAGACTGTCAGCAGAGCTCCAAGAC...CAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGATCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | TGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGGACATGCTTTAAGCCACTTCAAGGGGACTTGGATCTaGGCTTTTCTGACTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: WAGRGAVSISFGHALSHFKGTWI*AFLTSV Trigger: AACAGAAGTCAGAAAAGCTCAGATCCAAGTCCCCTT...GAAGTGGCTTAAAGCATGTCCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | GGTGATCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTAAGGGGACTTGGATCTaGGCTTTTCTGACTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: GDPRAHLGFHHLLSCPLAKGTWI*AFLTSV Trigger: AACAGAAGTCAGAAAAGCTCAGATCCAAGTCCCCTT...AGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGATCACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | TGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGGACATGCTTTAAGCCACTTCACTCTACCTCAGAAATaGCACGGTTGCACCAATACT | + |
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Preference number: 4 (lower is better) Translates to: WAGRGAVSISFGHALSHFTLPQK*HGCTNT Trigger: AGTATTGGTGCAACCGTGTCATTTCTGAGGTAGAGT...GAAGTGGCTTAAAGCATGTCCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| 3UTR CAA 72 bp | CTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTaGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LFYSQRRSLIMS*GRQRGCLYQLW Trigger: CCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | TGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGGACATGCTTTAAGCCACTTCCGAGTCCAAAATCAATaGTCTTCACTTTCCCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: WAGRGAVSISFGHALSHFRVQNQ*SSLSHL Trigger: AAGATGGGAAAGTGAAGATCATTGATTTTGGACTCG...GAAGTGGCTTAAAGCATGTCCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | ATCCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACCGAGTCCAAAATCAATaGTCTTCACTTTCCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: IPEPIWDFIICFLAPWLDRVQNQ*SSLSHL Trigger: AAGATGGGAAAGTGAAGATCATTGATTTTGGACTCG...GTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGGGATCTGAGCTTTTCTaGCTTCTGTTGACTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: KHLFYSQRRSLIMSLGRQGSELF*LLLTPR Trigger: CCTGGGAGTCAACAGAAGTCAGAAAAGCTCAGATCC...CTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS-3UTR TCA 90 bp | AAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGACTCTACCTCAGAAATaGCACGGTTGCACCAATACT | + |
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Preference number: 4 (lower is better) Translates to: KHLFYSQRRSLIMSLGRQTLPQK*HGCTNT Trigger: AGTATTGGTGCAACCGTGTCATTTCTGAGGTAGAGT...CTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS CCA 90 bp | CAGCCCCTGCTGTGGACAGGCTTATCTGCTGCTGAGGCTCTGGTGTaGCCTTGTGTGCTCTCTTCGCTGCTGTTTGGCTGGACTGTGCAA | + |
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Preference number: 5 (lower is better) Translates to: QPLLWTGLSAAEALV*PCVLSSLLFGWTVQ Trigger: TTGCACAGTCCAGCCAAACAGCAGCGAAGAGAGCACACAAGGCCACACCAGAGCCTCAGCAGCAGATAAGCCTGTCCACAGCAGGGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS GCA 72 bp | TCTGGGAACACCCCTGAGCCTTCTGTGACCCAGGGATaGACCATAACCTCAGCAACAGTGGGCCTGAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: SGNTPEPSVTQG*TITSATVGLSL Trigger: CAAACTCAGGCCCACTGTTGCTGAGGTTATGGTGCATCCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS GCA 72 bp | CTTTTCTTACTAGTACTCTTGCCACAGACAGACACTTaGCTATTGGCGGATGACCAGGGACATGTGGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LFLLVLLPQTDT*LLADDQGHVGS Trigger: TGAACCCACATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTGTCTGTGGCAAGAGTACTAGTAAGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS CAA 72 bp | GCCATCATCAGTAACTCTACCTCAGAAATGACACGGTaGCACCAATACTCCCTCTTTCGAATCGTTTTGACA | + |
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Preference number: 6 (lower is better) Translates to: AIISNSTSEMTR*HQYSLFRIVLT Trigger: TGTCAAAACGATTCGAAAGAGGGAGTATTGGTGCAACCGTGTCATTTCTGAGGTAGAGTTACTGATGATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS CAA 72 bp | CCACAGAATAAGTTGAGTTTTTGCCCTGGCTTCACTTaGGTGCCGAGTCCAAAATCAATGATCTTCACTTTC | + |
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Preference number: 6 (lower is better) Translates to: PQNKLSFCPGFT*VPSPKSMIFTF Trigger: GAAAGTGAAGATCATTGATTTTGGACTCGGCACCAAAGTGAAGCCAGGGCAAAAACTCAACTTATTCTGTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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| CDS CAA 72 bp | CATAATGAGGTATACTTTCTTCTTGGTCTCAATGACTaGAAGGAGAGAGATGATATTCGGATGATCGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: HNEVYFLLGLND*KERDDIRMIGH Trigger: ATGGCCGATCATCCGAATATCATCTCTCTCCTTCAAGTCATTGAGACCAAGAAGAAAGTATACCTCATTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100537.3 ENSMUST00000166206.9 |
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