Pregenerated sensors for SMOK3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075599Ensembl transcript IDs: ENSMUST00000085886.3, ENSMUST00000171498.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCACTTCCTCCCCCTAGCATGGTCAGTTCCCCTCCTTGTTCAACATaGAGGATACACGCAGGAGATACCTTCTGGGATGCTAGGTCTGTT | + |
|
Preference number: 1 (lower is better) Translates to: PLPPPSMVSSPPCST*RIHAGDTFWDARSV Trigger: AACAGACCTAGCATCCCAGAAGGTATCTCCTGCGTGTATCCTGCATGTTGAACAAGGAGGGGAACTGACCATGCTAGGGGGAGGAAGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR GCA 90 bp | CATCTGCCAGTTGACACAGACATGAGTAACATAGATACATTCAAATaGAGAAATGTACCTGGGCCGTGCCGGATGCTTGTTCTCCTGACA | + |
|
Preference number: 1 (lower is better) Translates to: HLPVDTDMSNIDTFK*RNVPGPCRMLVLLT Trigger: TGTCAGGAGAACAAGCATCCGGCACGGCCCAGGTACATTTCTGCATTTGAATGTATCTATGTTACTCATGTCTGTGTCAACTGGCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR-3UTR GCA 90 bp | ACTCTGAGAACCTCAGCTGCACAGGGCATCTCTCCAGCTGTGGTTACCCTGTTTACTGCTCCCCCAAGTTaGCTCCTCCTGTCTCAACCT | + |
|
Preference number: 2 (lower is better) Translates to: TLRTSAAQGISPAVVTLFTAPPS*LLLSQP Trigger: AGGTTGAGACAGGAGGAGGCAACTTGGGGGAGCAGT...AAACAGGGTAACCACAGCTGGAGAGATGCCCTGTGCAGCTGAGGTTCTCAGAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR CAA 90 bp | ACTTCTCTGAATGGTGATCCCAGAGCCCATCTGGGATTTCATCATTaGCTTTCTTGCCCCCTGGCTGGACTGGGGGCTCTGAGTGAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: TSLNGDPRAHLGFHH*LSCPLAGLGALSEA Trigger: TGCTTCACTCAGAGCCCCCAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGGATCACCATTCAGAGAAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| 3UTR-3UTR GCA 90 bp | CCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGCCTCCTTGTTCAACATaGAGGATACACGCAGGAGAT | + |
|
Preference number: 2 (lower is better) Translates to: PRAHLGFHHLLSCPLAGLPPCST*RIHAGD Trigger: ATCTCCTGCGTGTATCCTGCATGTTGAACAAGGAGG...CAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR-3UTR GCA 90 bp | ACGCAGGAGATACCTTCTGGGATGCTAGGTCTGTTGGCAGGTTCGATTTACCCAATAGATACATTCAAATaGAGAAATGTACCTGGGCCG | + |
|
Preference number: 2 (lower is better) Translates to: TQEIPSGMLGLLAGSIYPIDTFK*RNVPGP Trigger: CGGCCCAGGTACATTTCTGCATTTGAATGTATCTAT...TGGGTAAATCGAACCTGCCAACAGACCTAGCATCCCAGAAGGTATCTCCTGCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR-3UTR CCA 90 bp | ATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGATCCCAGAGCCCATCTaGGATTTCATCATTTGCTTT | + |
|
Preference number: 2 (lower is better) Translates to: ILFSEEESDYELGQAEGLIPEPI*DFIICF Trigger: AAAGCAAATGATGAAATCCCAGATGGGCTCTGGGAT...CAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| 3UTR CAA 90 bp | CACAAACATCTATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTaGGGCAGGCAGAGGGGCTGTCTCTATCAGCTTTGGACATGCTTT | + |
|
Preference number: 2 (lower is better) Translates to: HKHLFYSQRRSLIMS*GRQRGCLYQLWTCF Trigger: AAAGCATGTCCAAAGCTGATAGAGACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAATAGATGTTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| 3UTR-3UTR CAA 90 bp | CCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGCACTGCTCCCCCAAGTaGCCTCCTCCTGTCTCAACC | + |
|
Preference number: 3 (lower is better) Translates to: PRAHLGFHHLLSCPLAGLHCSPK*PPPVST Trigger: GGTTGAGACAGGAGGAGGCAACTTGGGGGAGCAGTG...CAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR GCA 72 bp | GGGCATCTCTCCAGCTGTGGTTACCCTGTTTCACACTaGTCCCCCAAGTTGCCTCCTCCTGTCTCAACCTCT | + |
|
Preference number: 3 (lower is better) Translates to: GHLSSCGYPVSH*SPKLPPPVSTS Trigger: AGAGGTTGAGACAGGAGGAGGCAACTTGGGGGAGCAGTGTGAAACAGGGTAACCACAGCTGGAGAGATGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR GCA 72 bp | CAAAGCACACGTGAGAGGGACTCTGAGAACCTCAGCTaGACAGGGCATCTCTCCAGCTGTGGTTACCCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: QSTRERDSENLS*TGHLSSCGYPV Trigger: AACAGGGTAACCACAGCTGGAGAGATGCCCTGTGCAGCTGAGGTTCTCAGAGTCCCTCTCACGTGTGCTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR GCA 72 bp | CCCCCTAGCATGGTCAGTTCCCCTCCTTGTTCAACATaGAGGATACACGCAGGAGATACCTTCTGGGATGCT | + |
|
Preference number: 3 (lower is better) Translates to: PPSMVSSPPCST*RIHAGDTFWDA Trigger: AGCATCCCAGAAGGTATCTCCTGCGTGTATCCTGCATGTTGAACAAGGAGGGGAACTGACCATGCTAGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR TCA 72 bp | TATAACTGTAGAATCGTAGCATCCGGCATCCTCTGGTaGTCTTCTAAAATGCAAAGCACACGTGAGAGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: YNCRIVASGILW*SSKMQSTRERD Trigger: GTCCCTCTCACGTGTGCTTTGCATTTTAGAAGATCACCAGAGGATGCCGGATGCTACGATTCTACAGTTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| 3UTR GCA 72 bp | GTTGACACAGACATGAGTAACATAGATACATTCAAATaGAGAAATGTACCTGGGCCGTGCCGGATGCTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: VDTDMSNIDTFK*RNVPGPCRMLV Trigger: AACAAGCATCCGGCACGGCCCAGGTACATTTCTGCATTTGAATGTATCTATGTTACTCATGTCTGTGTCAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | CAGCTGCACAGGGCATCTCTCCAGCTGTGGTTACCCTGTTTCACACTGCTCCCCGTGGTCCATTGTGGGTaGCGTGTGGCGTGGCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: QLHRASLQLWLPCFTLLPVVHCG*RVAWPA Trigger: GGCAGGCCACGCCACACGGCACCCACAATGGACCAC...GGGGAGCAGTGTGAAACAGGGTAACCACAGCTGGAGAGATGCCCTGTGCAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR CCA 90 bp | CGTGAGAGGGACTCTGAGAACCTCAGCTGCACAGGGCATCTCTCCAGCTGTGGTGGCCAGCCCCTGCTGTaGACAGGCTTATCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RERDSENLSCTGHLSSCGGQPLL*TGLSAA Trigger: AGCAGCAGATAAGCCTGTCCACAGCAGGGGCTGGCC...ACCACAGCTGGAGAGATGCCCTGTGCAGCTGAGGTTCTCAGAGTCCCTCTCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | TTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGTGTGGTCCATTGTGGGTaGCGTGTGGCGTGGCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: FYSQRRSLIMSLGRQRGCVVHCG*RVAWPA Trigger: GGCAGGCCACGCCACACGGCACCCACAATGGACCAC...ACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR GCA 90 bp | CACTTCCTCCCCCTAGCATGGTCAGTTCCCCTCCTTGTTCAACATGCAGGATACCTCTGGGCCAGCCCCTaGTGTGGACAGGCTTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: HFLPLAWSVPLLVQHAGYLWASP*CGQAYL Trigger: CAGATAAGCCTGTCCACAGCAGGGGCTGGCCCAGAG...GTATCCTGCATGTTGAACAAGGAGGGGAACTGACCATGCTAGGGGGAGGAAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | CCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGTGGTGTGGCCTTGTGTaGTCTCTTCGCTGCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: PRAHLGFHHLLSCPLAGLWCGLV*SLRCCL Trigger: CAAACAGCAGCGAAGAGAGCACACAAGGCCACACCA...CAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR GCA 90 bp | TTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGTCTCTGGGCCAGCCCCTaGTGTGGACAGGCTTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: FYSQRRSLIMSLGRQRGCLWASP*CGQAYL Trigger: CAGATAAGCCTGTCCACAGCAGGGGCTGGCCCAGAG...ACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR GCA 90 bp | ACTCTGAGAACCTCAGCTGCACAGGGCATCTCTCCAGCTGTGGTTACCCTGTTTTGGTGTGGCCTTGTGTaGTCTCTTCGCTGCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: TLRTSAAQGISPAVVTLFWCGLV*SLRCCL Trigger: CAAACAGCAGCGAAGAGAGCACACAAGGCCACACCA...AAACAGGGTAACCACAGCTGGAGAGATGCCCTGTGCAGCTGAGGTTCTCAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR CCA 90 bp | CCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGGTTGAGTTTTTGCCCTaGCTTCACTTTGGTGCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: PRAHLGFHHLLSCPLAGLVEFLP*LHFGAE Trigger: CTCGGCACCAAAGTGAAGCCAGGGCAAAAACTCAAC...CAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| 3UTR CAA 72 bp | TACACGCAGGAGATACCTTCTGGGATGCTAGGTCTGTaGGCAGGTTCGATTTACCCATCATCCCACGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: YTQEIPSGMLGL*AGSIYPSSHGV Trigger: GACACCGTGGGATGATGGGTAAATCGAACCTGCCAACAGACCTAGCATCCCAGAAGGTATCTCCTGCGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR CCA 90 bp | CCCAGAGCCCATCTGGGATTTCATCATTTGCTTTCTTGCCCCCTGGCTGGACTGAGACTAAGCAGGTCTTaGAGCTCTGCTGACAGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: PRAHLGFHHLLSCPLAGLRLSRS*SSADSL Trigger: TAGACTGTCAGCAGAGCTCCAAGACCTGCTTAGTCT...CAGTCCAGCCAGGGGGCAAGAAAGCAAATGATGAAATCCCAGATGGGCTCTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR GCA 90 bp | AGAGGGACTCTGAGAACCTCAGCTGCACAGGGCATCTCTCCAGCTGTGGTTACCTGTTTGGCTGGACTGTaGAAAACATTGAGCAAATGC | + |
|
Preference number: 4 (lower is better) Translates to: RGTLRTSAAQGISPAVVTCLAGL*KTLSKC Trigger: GCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACA...GGTAACCACAGCTGGAGAGATGCCCTGTGCAGCTGAGGTTCTCAGAGTCCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | CACGCAGGAGATACCTTCTGGGATGCTAGGTCTGTTGGCAGGTTCGATTTACCCCCCGATATGTCCCATTaGTTTTACAATTGCAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: HAGDTFWDARSVGRFDLPPDMSH*FYNCRV Trigger: GACCCTGCAATTGTAAAAGCAATGGGACATATCGGG...GGGTAAATCGAACCTGCCAACAGACCTAGCATCCCAGAAGGTATCTCCTGCGTG 50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR CCA 90 bp | ATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGGTTGAGTTTTTGCCCTaGCTTCACTTTGGTGCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: ILFSEEESDYELGQAEGLVEFLP*LHFGAE Trigger: CTCGGCACCAAAGTGAAGCCAGGGCAAAAACTCAAC...CAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR CCA 90 bp | GGATACACGCAGGAGATACCTTCTGGGATGCTAGGTCTGTTGGCAGGTTCGATTAGACTAAGCAGGTCTTaGAGCTCTGCTGACAGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: GYTQEIPSGMLGLLAGSIRLSRS*SSADSL Trigger: TAGACTGTCAGCAGAGCTCCAAGACCTGCTTAGTCT...AATCGAACCTGCCAACAGACCTAGCATCCCAGAAGGTATCTCCTGCGTGTATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | CACTTCCTCCCCCTAGCATGGTCAGTTCCCCTCCTTGTTCAACATGCAGGATACAATAAGTTGAGTTTTTaGCCTGGCTTCACTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: HFLPLAWSVPLLVQHAGYNKLSF*PGFTLV Trigger: CACCAAAGTGAAGCCAGGGCAAAAACTCAACTTATT...GTATCCTGCATGTTGAACAAGGAGGGGAACTGACCATGCTAGGGGGAGGAAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | ATGCAAAGCACACGTGAGAGGGACTCTGAGAACCTCAGCTGCACAGGGCATCTCAATAGAATACTTTCCTaGAAGAATTCGCTTTACCAG | + |
|
Preference number: 4 (lower is better) Translates to: MQSTRERDSENLSCTGHLNRILS*KNSLYQ Trigger: CTGGTAAAGCGAATTCTTGCAGGAAAGTATTCTATT...GAGATGCCCTGTGCAGCTGAGGTTCTCAGAGTCCCTCTCACGTGTGCTTTGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR GCA 90 bp | TTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGTTGTTTGGCTGGACTGTaGAAAACATTGAGCAAATGC | + |
|
Preference number: 4 (lower is better) Translates to: FYSQRRSLIMSLGRQRGCCLAGL*KTLSKC Trigger: GCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACA...ACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR GCA 90 bp | ATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGAATAAGTTGAGTTTTTaGCCTGGCTTCACTTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ILFSEEESDYELGQAEGLNKLSF*PGFTLV Trigger: CACCAAAGTGAAGCCAGGGCAAAAACTCAACTTATT...CAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR GCA 90 bp | ATTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGAATAGAATACTTTCCTaGAAGAATTCGCTTTACCAG | + |
|
Preference number: 4 (lower is better) Translates to: ILFSEEESDYELGQAEGLNRILS*KNSLYQ Trigger: CTGGTAAAGCGAATTCTTGCAGGAAAGTATTCTATT...CAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR CAA 90 bp | AGAGGGACTCTGAGAACCTCAGCTGCACAGGGCATCTCTCCAGCTGTGGTTACCTCAGCCAAAGGGGACTaGGATCTGAGCTTTTCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: RGTLRTSAAQGISPAVVTSAKGD*DLSFSD Trigger: GTCAGAAAAGCTCAGATCCAAGTCCCCTTTGGCTGA...GGTAACCACAGCTGGAGAGATGCCCTGTGCAGCTGAGGTTCTCAGAGTCCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS TCA 90 bp | TTGTGTGCTCTCTTCGCTGCTGTTTGGCTGGACTGTGCAAAACATTaGGCAAATGCAGGGTACACTCCTAGTACGGGTGCGTGTGTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: LCALFAAVWLDCAKH*ANAGYTPSTGACVV Trigger: GACCACACACGCACCCGTACTAGGAGTGTACCCTGCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCGAAGAGAGCACACAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS TCA 90 bp | ACTGTGGCACAGCCTCCATGGCCGATAGTCTCTAGCATCACATATTaGGCATGCAAACCATCCATGTCAGCCAAAGGGGACTTGGATCTG | + |
|
Preference number: 5 (lower is better) Translates to: TVAQPPWPIVSSITY*ACKPSMSAKGDLDL Trigger: CAGATCCAAGTCCCCTTTGGCTGACATGGATGGTTTGCATGCTCAATATGTGATGCTAGAGACTATCGGCCATGGAGGCTGTGCCACAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR CAA 90 bp | TTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGTTCAGCCAAAGGGGACTaGGATCTGAGCTTTTCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: FYSQRRSLIMSLGRQRGCSAKGD*DLSFSD Trigger: GTCAGAAAAGCTCAGATCCAAGTCCCCTTTGGCTGA...ACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS-3UTR CAA 90 bp | ACGCAGGAGATACCTTCTGGGATGCTAGGTCTGTTGGCAGGTTCGATTTACCCAACCCGATATGTCCCATaGCTTTTACAATTGCAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: TQEIPSGMLGLLAGSIYPTRYVP*LLQLQG Trigger: ACCCTGCAATTGTAAAAGCAATGGGACATATCGGGT...TGGGTAAATCGAACCTGCCAACAGACCTAGCATCCCAGAAGGTATCTCCTGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085886.3 |
||
| CDS-3UTR CAA 90 bp | TTTTATTCTCAGAGGAGGAGTCTGATTATGAGCTTGGGCAGGCAGAGGGGCTGTACCCGATATGTCCCATaGCTTTTACAATTGCAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: FYSQRRSLIMSLGRQRGCTRYVP*LLQLQG Trigger: ACCCTGCAATTGTAAAAGCAATGGGACATATCGGGT...ACAGCCCCTCTGCCTGCCCAAGCTCATAATCAGACTCCTCCTCTGAGAATAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS CCA 72 bp | GTCCAGCCCTTGATGCCTCTGGGCCAGCCCCTGCTGTaGACAGGCTTATCTGCTGCTGAGGCTCTGGTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: VQPLMPLGQPLL*TGLSAAEALVW Trigger: CCACACCAGAGCCTCAGCAGCAGATAAGCCTGTCCACAGCAGGGGCTGGCCCAGAGGCATCAAGGGCTGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS CCA 72 bp | GGTGCGTGTGTGGTCCATTGTGGGTGCCGTGTGGCGTaGCCTGCCGAGAACACTGGGCCAACTGACTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: GACVVHCGCRVA*PAENTGPTDSS Trigger: AGAAGAGTCAGTTGGCCCAGTGTTCTCGGCAGGCCACGCCACACGGCACCCACAATGGACCACACACGCACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS CCA 72 bp | CAGACACTTGCCTATTGGCGGATGACCAGGGACATGTaGGTTCATTCTCTCTCCTGCGAAGTCCGAGACGGG | + |
|
Preference number: 6 (lower is better) Translates to: QTLAYWRMTRDM*VHSLSCEVRDG Trigger: CCCGTCTCGGACTTCGCAGGAGAGAGAATGAACCCACATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS TCA 72 bp | GCAAACCATCCATGTCAGCCAAAGGGGACTTGGATCTaGGCTTTTCTGACTTCTGTTGACTCCCAGGGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: ANHPCQPKGTWI*AFLTSVDSQGP Trigger: TGGGCCCTGGGAGTCAACAGAAGTCAGAAAAGCTCAGATCCAAGTCCCCTTTGGCTGACATGGATGGTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS CCA 72 bp | GGGAGACTCTGTTCTGCCCCAGGTGAGATGTCTCTTTaGATGGGATACAGCAACAGAGCTTCCTCATCGCAT | + |
|
Preference number: 6 (lower is better) Translates to: GRLCSAPGEMSL*MGYSNRASSSH Trigger: ATGCGATGAGGAAGCTCTGTTGCTGTATCCCATCCAAAGAGACATCTCACCTGGGGCAGAACAGAGTCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS TCA 72 bp | CAGCCTCCATGGCCGATAGTCTCTAGCATCACATATTaGGCATGCAAACCATCCATGTCAGCCAAAGGGGAC | + |
|
Preference number: 6 (lower is better) Translates to: QPPWPIVSSITY*ACKPSMSAKGD Trigger: GTCCCCTTTGGCTGACATGGATGGTTTGCATGCTCAATATGTGATGCTAGAGACTATCGGCCATGGAGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS CCA 72 bp | GTGTGGCCTTGTGTGCTCTCTTCGCTGCTGTTTGGCTaGACTGTGCAAAACATTGAGCAAATGCAGGGTACA | + |
|
Preference number: 6 (lower is better) Translates to: VWPCVLSSLLFG*TVQNIEQMQGT Trigger: TGTACCCTGCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCGAAGAGAGCACACAAGGCCACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||
| CDS TCA 72 bp | GATGATCGGCCATCATCAGTAACTCTACCTCAGAAATaGCACGGTTGCACCAATACTCCCTCTTTCGAATCG | + |
|
Preference number: 6 (lower is better) Translates to: DDRPSSVTLPQK*HGCTNTPSFES Trigger: CGATTCGAAAGAGGGAGTATTGGTGCAACCGTGTCATTTCTGAGGTAGAGTTACTGATGATGGCCGATCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085886.3 ENSMUST00000171498.3 |
||