Pregenerated sensors for SMOK2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073457Ensembl transcript IDs: ENSMUST00000059824.7, ENSMUST00000162940.3
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCTCGGAATGGTaGTCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCC | + |
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Preference number: 1 (lower is better) Translates to: VSTSFGQAFSPCSEW*SRRPSGNSSFAFFP Trigger: GGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACCATTCCGAGCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR TCA 90 bp | TTCATCATTTGCTTTCTTCCCCCTGGCTGGACTCTGGGCACTGAGTaGAGCACGCTGAACCTGGAACATGATGCCTTTCCACAAGGTTCC | + |
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Preference number: 1 (lower is better) Translates to: FIICFLPPGWTLGTE*STLNLEHDAFPQGS Trigger: GGAACCTTGTGGAAAGGCATCATGTTCCAGGTTCAGCGTGCTTCACTCAGTGCCCAGAGTCCAGCCAGGGGGAAGAAAGCAAATGATGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR TCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGACTCTGGGCACTGAGTaGAGCACGCTGAACCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLTLGTE*STLNLE Trigger: TTCCAGGTTCAGCGTGCTTCACTCAGTGCCCAGAGT...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR TCA 90 bp | AGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTCTGGACTCTGGGCACTaGGTGAAGCACGCTGAACCT | + |
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Preference number: 2 (lower is better) Translates to: RSLIMTLDRQRGFCLYQLLDSGH*VKHAEP Trigger: AGGTTCAGCGTGCTTCACTCAGTGCCCAGAGTCCAG...AAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR GCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGTGGGAATTCATCATTTaGTTTCTTCCCCCTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLWEFII*FLPPGW Trigger: CCAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCA...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR TCA 90 bp | AGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTCTGAGTGAAGCACGCTaGACCTGGAACATGATGCCT | + |
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Preference number: 2 (lower is better) Translates to: RSLIMTLDRQRGFCLYQLLSEAR*TWNMMP Trigger: AGGCATCATGTTCCAGGTTCAGCGTGCTTCACTCAG...AAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR TCA 90 bp | AGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGGCTGAACCTGGAACATaGTGCCTTTCCACAAGGTTC | + |
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Preference number: 2 (lower is better) Translates to: SLIMTLDRQRGFCLYQLWAEPGT*CLSTRF Trigger: GAACCTTGTGGAAAGGCATCATGTTCCAGGTTCAGC...CCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR CCA 90 bp | AGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTATCCCGGAGACCATCTaGGAATTCATCATTTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: RSLIMTLDRQRGFCLYQLIPETI*EFIICF Trigger: AAAGCAAATGATGAATTCCCAGATGGTCTCCGGGAT...AAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR CCA 90 bp | ATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCGTCCATGTCTATACATaGGTGCTTTCCAATACTATA | + |
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Preference number: 2 (lower is better) Translates to: IMTLDRQRGFCLYQLWTGVHVYT*VLSNTI Trigger: TATAGTATTGGAAAGCACCCATGTATAGACATGGAC...GCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR CAA 90 bp | AGCACGCTGAACCTGGAACATGATGCCTTTCCACAAGGTTCCTTTTaGCAGGTCCATGTCTATACATGGGTGCTTTCCAATACTATAACT | + |
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Preference number: 2 (lower is better) Translates to: STLNLEHDAFPQGSF*QVHVYTWVLSNTIT Trigger: AGTTATAGTATTGGAAAGCACCCATGTATAGACATGGACCTGCAAAAAGGAACCTTGTGGAAAGGCATCATGTTCCAGGTTCAGCGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR TCA 72 bp | CCCCTGGCTGGACTCTGGGCACTGAGTGAAGCACGCTaGACCTGGAACATGATGCCTTTCCACAAGGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: PLAGLWALSEAR*TWNMMPFHKVP Trigger: AGGAACCTTGTGGAAAGGCATCATGTTCCAGGTTCAGCGTGCTTCACTCAGTGCCCAGAGTCCAGCCAGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR CCA 72 bp | CTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTaGACAGGCTTTCAGCCCCTGCTCGGAATGGTGATC | + |
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Preference number: 3 (lower is better) Translates to: LDRQRGFCLYQL*TGFQPLLGMVI Trigger: GATCACCATTCCGAGCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR TCA 72 bp | TGCTTTCTTCCCCCTGGCTGGACTCTGGGCACTGAGTaGAGCACGCTGAACCTGGAACATGATGCCTTTCCA | + |
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Preference number: 3 (lower is better) Translates to: CFLPPGWTLGTE*STLNLEHDAFP Trigger: TGGAAAGGCATCATGTTCCAGGTTCAGCGTGCTTCACTCAGTGCCCAGAGTCCAGCCAGGGGGAAGAAAGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR-3UTR CAA 90 bp | ATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCCCACAAGGTTCCTTTTaGCAGGTCCATGTCTATACA | + |
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Preference number: 3 (lower is better) Translates to: IMTLDRQRGFCLYQLWTGPQGSF*QVHVYT Trigger: TGTATAGACATGGACCTGCAAAAAGGAACCTTGTGG...GCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCTCTGGGCCAGCCCCTaGTGCGGACAGGCTTATCCT | + |
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Preference number: 4 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLLWASP*CGQAYP Trigger: AGGATAAGCCTGTCCGCAGCAGGGGCTGGCCCAGAG...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | GTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCCCTGGCTGGTGGGCCAGCCCCTGCTaGGGACAGGCTTATCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VIPETIWEFIICFLPPGWWASPC*GQAYPL Trigger: CAGAGGATAAGCCTGTCCGCAGCAGGGGCTGGCCCA...CCAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | GGTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCCCTGGCTGATCTGGGAACACCCCTaGGCCTTCTGTGACCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: GDPGDHLGIHHLLSSPWLIWEHP*AFCDPG Trigger: CCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGAT...CAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | ATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCGATGGATTCATGGGCTaGGCCCGGATTGGCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: IMTLDRQRGFCLYQLWTGDGFMG*ARIGLS Trigger: TGACAGGCCAATCCGGGCTCAGCCCATGAATCCATC...GCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | GGTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCCCTGGCTGAGGCTTATCCTCTGCTaGGGCACTGGTGTGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GDPGDHLGIHHLLSSPWLRLILC*GTGVAF Trigger: GAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCT...CAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | AGCAGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGTCGCAGGGTTTGGCTTaGGGGGCATCTGTTCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SRSLIMTLDRQRGFCLYQSQGLA*GASVLH Trigger: GTGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGA...CTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCCCAGCTTTTGTATGCTaGCAGCATCAAACGGGACCT | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCPAFVC*QHQTGP Trigger: AGGTCCCGTTTGATGCTGCCAGCATACAAAAGCTGG...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | ATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCGGGCTGAGCCCGGATTaGCCTGTCACATTCCTTAAG | + |
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Preference number: 4 (lower is better) Translates to: IMTLDRQRGFCLYQLWTGGLSPD*PVTFLK Trigger: CTTAAGGAATGTGACAGGCCAATCCGGGCTCAGCCC...GCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGTCTTTCGAATCATTTTaGCAGCCACATGGGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLSFESF*QPHGSL Trigger: CAGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGA...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCTTGAAGGAGAGAGATaGTATTCGGATGATCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLLEGER*YSDDRP Trigger: TGGCCGATCATCCGAATATCATCTCTCTCCTTCAAG...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | GTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCCCTGGCTGGGGTTTCAGGTCCCTGTaGACTATACCCTGGTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: VIPETIWEFIICFLPPGWGFRSL*TIPWLW Trigger: CCACAACCAGGGTATAGTTCACAGGGACCTGAAACC...CCAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | GGTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCCCTGGCTGATTTTGACAGCCACATaGGAGCCTGTGAGGCGATGC | + |
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Preference number: 4 (lower is better) Translates to: GDPGDHLGIHHLLSSPWLILTAT*EPVRRC Trigger: GCATCGCCTCACAGGCTCCCATGTGGCTGTCAAAAT...CAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGAACAAGGGAAGGGAATaGGGTCACCGATGGATTCAT | + |
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Preference number: 4 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLNKGRE*GHRWIH Trigger: ATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTT...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | AGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTCCTCTGCTGAGGCACTaGTGTGGCCTTCTGTACTGT | + |
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Preference number: 4 (lower is better) Translates to: RSLIMTLDRQRGFCLYQLPLLRH*CGLLYC Trigger: ACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGG...AAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | AGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGCTACTGTGCCCCACGTaGGATGTCTCTTTTGATGGG | + |
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Preference number: 4 (lower is better) Translates to: SLIMTLDRQRGFCLYQLWLLCPT*DVSFDG Trigger: CCCATCAAAAGAGACATCTCACGTGGGGCACAGTAG...CCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | GTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCCCCCTGGCTGGTACAATCGCAGGGTTTaGCTTGAGGGGCATCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: VIPETIWEFIICFLPPGWYNRRV*LEGHLF Trigger: GAACAGATGCCCCTCAAGCCAAACCCTGCGATTGTA...CCAGCCAGGGGGAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCAAACACTGGGCCAACTaGATCTTCTGTCTCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCKHWAN*IFCLFS Trigger: AGAAAAGAGACAGAAGATTCAGTTGGCCCAGTGTTT...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | CCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCGATATATCCCATTaGTTTTACAATCGCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: PWIGRGASVSTSFGQAFSPDISH*FYNRRV Trigger: AACCCTGCGATTGTAAAAGCAATGGGATATATCGGG...GCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGTTGGTCTCAATGACTTaGAGGAGAGAGATGATATTC | + |
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Preference number: 4 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLLVSMT*RREMIF Trigger: GAATATCATCTCTCTCCTTCAAGTCATTGAGACCAA...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCATGCCATGGTTTCGTTaGATTTTCTCTGACGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCMPWFR*IFSDVK Trigger: CTTTACGTCAGAGAAAATTCAACGAAACCATGGCAT...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCGTCATCACTGCTGTTTaGCTGTATTGTGCAAAACAT | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCVITAV*LYCAKH Trigger: ATGTTTTGCACAATACAGCCAAACAGCAGTGATGAC...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR TCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCCGAGTCCAAAATCAATaGTCTTCACTTTTCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCRVQNQ*SSLFHL Trigger: AAGATGGAAAAGTGAAGATCATTGATTTTGGACTCG...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCAATAAGTTTAGTTTTTaGCCTGGCTTCACTTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCNKFSF*PGFTWV Trigger: AACCCAAGTGAAGCCAGGGCAAAAACTAAACTTATT...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | AGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGTTACCAGCTTTTGTATaGTGGCAGCATCAAACGGGA | + |
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Preference number: 4 (lower is better) Translates to: SLIMTLDRQRGFCLYQLWLPAFV*WQHQTG Trigger: TCCCGTTTGATGCTGCCAGCATACAAAAGCTGGTAA...CCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | AGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGCCACAGACAGACATTTaGCTATTGGCAGATAATCTG | + |
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Preference number: 4 (lower is better) Translates to: SLIMTLDRQRGFCLYQLWPQTDI*LLADNL Trigger: CAGATTATCTGCCAATAGGCAAATGTCTGTCTGTGG...CCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | ATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGCTGTTTGGCTGTATTGTaGAAAACATTGAGTAAATGC | + |
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Preference number: 4 (lower is better) Translates to: IGRGASVSTSFGQAFSPCCLAVL*KTLSKC Trigger: GCATTTACTCAATGTTTTGCACAATACAGCCAAACA...GCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CCA 90 bp | AGCAGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTCCGAAGTCCAAGATaGAAAGTAGAAGTATCAACA | + |
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Preference number: 4 (lower is better) Translates to: SRSLIMTLDRQRGFCLYQLRSPR*KVEVST Trigger: TGTTGATACTTCTACTTTCCATCTTGGACTTCGGAG...CTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR GCA 90 bp | AGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGAACAAAATACTTCCCTaGCAAAATTTGCCTTACCAG | + |
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Preference number: 4 (lower is better) Translates to: SLIMTLDRQRGFCLYQLWNKILP*QNLPYQ Trigger: CTGGTAAGGCAAATTTTGGCAGGGAAGTATTTTGTT...CCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| 3UTR CAA 72 bp | AACCTGGAACATGATGCCTTTCCACAAGGTTCCTTTTaGCAGGTCCATGTCTATACATGGGTGCTTTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: NLEHDAFPQGSF*QVHVYTWVLSN Trigger: ATTGGAAAGCACCCATGTATAGACATGGACCTGCAAAAAGGAACCTTGTGGAAAGGCATCATGTTCCAGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS TCA 90 bp | GATGCCTCTGGGCCAGCCCCTGCTGCGGACAGGCTTATCCTCTGCTaGGGCACTGGTGTGGCCTTCTGTACTGTCATCACTGCTGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: DASGPAPAADRLILC*GTGVAFCTVITAVW Trigger: CCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGGGGCTGGCCCAGAGGCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 90 bp | TGGGCCAGCCCCTGCTGCGGACAGGCTTATCCTCTGCTGAGGCACTaGTGTGGCCTTCTGTACTGTCATCACTGCTGTTTGGCTGTATTG | + |
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Preference number: 5 (lower is better) Translates to: WASPCCGQAYPLLRH*CGLLYCHHCCLAVL Trigger: CAATACAGCCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGGGGCTGGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS GCA 90 bp | CTCTTTCGAATCATTTTGACAGCCACATGGGAGCCTGTGAGGCGATaGCGGGCCAGCATCACCTTGGAGCAGCCTCCATGTCCGATAGTC | + |
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Preference number: 5 (lower is better) Translates to: LFRIILTATWEPVRR*RASITLEQPPCPIV Trigger: GACTATCGGACATGGAGGCTGCTCCAAGGTGATGCTGGCCCGGCATCGCCTCACAGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS GCA 90 bp | TCACAAGGATCTGGGAACACCCCTGAGCCTTCTGTGACCCAGGGATaGACCATAACTTCAGCAACAGTGGGCCTAAGTTTGGGGTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: SQGSGNTPEPSVTQG*TITSATVGLSLGLA Trigger: GGCCAACCCCAAACTTAGGCCCACTGTTGCTGAAGTTATGGTGCATCCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGATCCTTGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 90 bp | CAGCCCCTGCTGCGGACAGGCTTATCCTCTGCTGAGGCACTGGTGTaGCCTTCTGTACTGTCATCACTGCTGTTTGGCTGTATTGTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: QPLLRTGLSSAEALV*PSVLSSLLFGCIVQ Trigger: TTGCACAATACAGCCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGGGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | AGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGGGTCCATTGTGTGTGTaGTGTGGAGTGGCCTGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: SLIMTLDRQRGFCLYQLWGPLCV*CGVACR Trigger: CCGGCAGGCCACTCCACACAACACACACAATGGACC...CCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS TCA 90 bp | TGGCTTGAGGGGCATCTGTTCTTCACAAGGATCTGGGAACACCCCTaGGCCTTCTGTGACCCAGGGATGCACCATAACTTCAGCAACAGT | + |
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Preference number: 5 (lower is better) Translates to: WLEGHLFFTRIWEHP*AFCDPGMHHNFSNS Trigger: ACTGTTGCTGAAGTTATGGTGCATCCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 90 bp | CCGAAGTCCAAGATGGAAAGTAGAAGTATCAACAAGGGAAGGGAATaGGGTCACCGATGGATTCATGGGCTGAGCCCGGATTGGCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: PKSKMESRSINKGRE*GHRWIHGLSPDWPV Trigger: GACAGGCCAATCCGGGCTCAGCCCATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTTCTACTTTCCATCTTGGACTTCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | ATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCATCGCAGGGTTTGGCTaGAGGGGCATCTGTTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: IMTLDRQRGFCLYQLWTGIAGFG*RGICSS Trigger: TGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGAT...GCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | GATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTTTCAGCCCCTGTTGCCTTACCAGCTTTaGTATGCTGGCAGCATCAAA | + |
|
Preference number: 5 (lower is better) Translates to: DRQRGFCLYQLWTGFQPLLPYQL*YAGSIK Trigger: TTTGATGCTGCCAGCATACAAAAGCTGGTAAGGCAA...CAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS CCA 90 bp | AGCTTGGAACCCGATATATCCCATTGCTTTTACAATCGCAGGGTTTaGCTTGAGGGGCATCTGTTCTTCACAAGGATCTGGGAACACCCC | + |
|
Preference number: 5 (lower is better) Translates to: SLEPDISHCFYNRRV*LEGHLFFTRIWEHP Trigger: GGGGTGTTCCCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGATTGTAAAAGCAATGGGATATATCGGGTTCCAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 90 bp | ATGGAAAGTAGAAGTATCAACAAGGGAAGGGAATGGGGTCACCGATaGATTCATGGGCTGAGCCCGGATTGGCCTGTCACATTCCTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: MESRSINKGREWGHR*IHGLSPDWPVTFLK Trigger: CTTAAGGAATGTGACAGGCCAATCCGGGCTCAGCCCATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTTCTACTTTCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | AGCAGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCGTGAGATGTCTCTTTaGATGGGATACAGCAACAGA | + |
|
Preference number: 5 (lower is better) Translates to: SRSLIMTLDRQRGFCLYQREMSL*MGYSNR Trigger: TCTGTTGCTGTATCCCATCAAAAGAGACATCTCACG...CTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | AGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTCAGACATGACAGGATaGCACCAACACTCACTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: RSLIMTLDRQRGFCLYQLSDMTG*HQHSLF Trigger: AAAGAGTGAGTGTTGGTGCAATCCTGTCATGTCTGA...AAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | AGCAGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGTGTCATCACTGCTGTTaGGCTGTATTGTGCAAAACA | + |
|
Preference number: 5 (lower is better) Translates to: SRSLIMTLDRQRGFCLYQCHHCC*AVLCKT Trigger: TGTTTTGCACAATACAGCCAAACAGCAGTGATGACA...CTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | CTGCTCGGAATGGTGATCCCGGAGACCATCTGGGAATTCATCATTTGCTTTCTTCTCTTTCGAATCATTTaGACAGCCACATGGGAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: LLGMVIPETIWEFIICFLLFRII*TATWEP Trigger: AGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGAG...AAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACCATTCCGAGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS GCA 90 bp | TATCCTCTGCTGAGGCACTGGTGTGGCCTTCTGTACTGTCATCACTaGTGTTTGGCTGTATTGTGCAAAACATTGAGTAAATGCAGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: YPLLRHWCGLLYCHH*CLAVLCKTLSKCRE Trigger: TTCCCTGCATTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | AGGAGTCTGATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTCTTGGTCTCAATGACTaGAAGGAGAGAGATGATATT | + |
|
Preference number: 5 (lower is better) Translates to: RSLIMTLDRQRGFCLYQLLGLND*KERDDI Trigger: AATATCATCTCTCTCCTTCAAGTCATTGAGACCAAG...AAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAATCAGACTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS-3UTR CAA 90 bp | ATTATGACCCTGGATAGGCAGAGGGGCTTCTGTCTCTACCAGCTTTGGACAGGCTGCTGTTTGGCTGTATaGTGCAAAACATTGAGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: IMTLDRQRGFCLYQLWTGCCLAV*CKTLSK Trigger: TTTACTCAATGTTTTGCACAATACAGCCAAACAGCA...GCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTGCCTATCCAGGGTCATAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162940.3 |
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| CDS TCA 90 bp | TTCTGTACTGTCATCACTGCTGTTTGGCTGTATTGTGCAAAACATTaGGTAAATGCAGGGAACACTCCTAGTACGGGTGTGTGTGTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: FCTVITAVWLYCAKH*VNAGNTPSTGVCVV Trigger: GACCACACACACACCCGTACTAGGAGTGTTCCCTGCATTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGACAGTACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS GCA 72 bp | ATCATTTTGACAGCCACATGGGAGCCTGTGAGGCGATaGCGGGCCAGCATCACCTTGGAGCAGCCTCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: IILTATWEPVRR*RASITLEQPPC Trigger: ACATGGAGGCTGCTCCAAGGTGATGCTGGCCCGGCATCGCCTCACAGGCTCCCATGTGGCTGTCAAAATGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 72 bp | CCCTGCTGCGGACAGGCTTATCCTCTGCTGAGGCACTaGTGTGGCCTTCTGTACTGTCATCACTGCTGTTTG | + |
|
Preference number: 6 (lower is better) Translates to: PCCGQAYPLLRH*CGLLYCHHCCL Trigger: CAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 72 bp | CTGCGGACAGGCTTATCCTCTGCTGAGGCACTGGTGTaGCCTTCTGTACTGTCATCACTGCTGTTTGGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: LRTGLSSAEALV*PSVLSSLLFGC Trigger: ACAGCCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS TCA 72 bp | GGGCATCTGTTCTTCACAAGGATCTGGGAACACCCCTaGGCCTTCTGTGACCCAGGGATGCACCATAACTTC | + |
|
Preference number: 6 (lower is better) Translates to: GHLFFTRIWEHP*AFCDPGMHHNF Trigger: GAAGTTATGGTGCATCCCTGGGTCACAGAAGGCTCAGGGGTGTTCCCAGATCCTTGTGAAGAACAGATGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 72 bp | AGAAGTATCAACAAGGGAAGGGAATGGGGTCACCGATaGATTCATGGGCTGAGCCCGGATTGGCCTGTCACA | + |
|
Preference number: 6 (lower is better) Translates to: RSINKGREWGHR*IHGLSPDWPVT Trigger: TGTGACAGGCCAATCCGGGCTCAGCCCATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 90 bp | TCAGACATGACAGGATTGCACCAACACTCACTCTTTCGAATCATTTaGACAGCCACATGGGAGCCTGTGAGGCGATGCCGGGCCAGCATC | + |
|
Preference number: 6 (lower is better) Translates to: SDMTGLHQHSLFRII*TATWEPVRRCRASI Trigger: GATGCTGGCCCGGCATCGCCTCACAGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGAGTGAGTGTTGGTGCAATCCTGTCATGTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 72 bp | ACAGGATTGCACCAACACTCACTCTTTCGAATCATTTaGACAGCCACATGGGAGCCTGTGAGGCGATGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: TGLHQHSLFRII*TATWEPVRRCR Trigger: CCGGCATCGCCTCACAGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGAGTGAGTGTTGGTGCAATCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 90 bp | GTGACCCAGGGATGCACCATAACTTCAGCAACAGTGGGCCTAAGTTaGGGGTTGGCCGTCATTAAAAGACTAATCAGATCTCGGAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: VTQGCTITSATVGLS*GLAVIKRLIRSRSS Trigger: AGAGCTCCGAGATCTGATTAGTCTTTTAATGACGGCCAACCCCAAACTTAGGCCCACTGTTGCTGAAGTTATGGTGCATCCCTGGGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 72 bp | AAGATGGAAAGTAGAAGTATCAACAAGGGAAGGGAATaGGGTCACCGATGGATTCATGGGCTGAGCCCGGAT | + |
|
Preference number: 6 (lower is better) Translates to: KMESRSINKGRE*GHRWIHGLSPD Trigger: ATCCGGGCTCAGCCCATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTTCTACTTTCCATCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 72 bp | GGGAGACTCTACTGTGCCCCACGTGAGATGTCTCTTTaGATGGGATACAGCAACAGAGCTTCCTCATCACAT | + |
|
Preference number: 6 (lower is better) Translates to: GRLYCAPREMSL*MGYSNRASSSH Trigger: ATGTGATGAGGAAGCTCTGTTGCTGTATCCCATCAAAAGAGACATCTCACGTGGGGCACAGTAGAGTCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 90 bp | CAGGGATGCACCATAACTTCAGCAACAGTGGGCCTAAGTTTGGGGTaGGCCGTCATTAAAAGACTAATCAGATCTCGGAGCTCTACAGAC | + |
|
Preference number: 6 (lower is better) Translates to: QGCTITSATVGLSLG*AVIKRLIRSRSSTD Trigger: GTCTGTAGAGCTCCGAGATCTGATTAGTCTTTTAATGACGGCCAACCCCAAACTTAGGCCCACTGTTGCTGAAGTTATGGTGCATCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 90 bp | CTGCTGAGGCACTGGTGTGGCCTTCTGTACTGTCATCACTGCTGTTaGGCTGTATTGTGCAAAACATTGAGTAAATGCAGGGAACACTCC | + |
|
Preference number: 6 (lower is better) Translates to: LLRHWCGLLYCHHCC*AVLCKTLSKCREHS Trigger: GGAGTGTTCCCTGCATTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS TCA 72 bp | TTCCACAGACAGACATTTGCCTATTGGCAGATAATCTaGGACTCGTGGGTTCAGTCTCTCTCCTCCGAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: FHRQTFAYWQII*DSWVQSLSSEV Trigger: GACTTCGGAGGAGAGAGACTGAACCCACGAGTCTCAGATTATCTGCCAATAGGCAAATGTCTGTCTGTGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS TCA 72 bp | GGAGACTCTACTGTGCCCCACGTGAGATGTCTCTTTTaGTGGGATACAGCAACAGAGCTTCCTCATCACATT | + |
|
Preference number: 6 (lower is better) Translates to: GDSTVPHVRCLF*WDTATELPHHI Trigger: AATGTGATGAGGAAGCTCTGTTGCTGTATCCCATCAAAAGAGACATCTCACGTGGGGCACAGTAGAGTCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CCA 72 bp | CCCGATATATCCCATTGCTTTTACAATCGCAGGGTTTaGCTTGAGGGGCATCTGTTCTTCACAAGGATCTGG | + |
|
Preference number: 6 (lower is better) Translates to: PDISHCFYNRRV*LEGHLFFTRIW Trigger: CCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGATTGTAAAAGCAATGGGATATATCGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 72 bp | ACCATAACTTCAGCAACAGTGGGCCTAAGTTTGGGGTaGGCCGTCATTAAAAGACTAATCAGATCTCGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: TITSATVGLSLG*AVIKRLIRSRS Trigger: GCTCCGAGATCTGATTAGTCTTTTAATGACGGCCAACCCCAAACTTAGGCCCACTGTTGCTGAAGTTATGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS TCA 72 bp | TATATCCCATTGCTTTTACAATCGCAGGGTTTGGCTTaGGGGGCATCTGTTCTTCACAAGGATCTGGGAACA | + |
|
Preference number: 6 (lower is better) Translates to: YIPLLLQSQGLA*GASVLHKDLGT Trigger: TGTTCCCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGATTGTAAAAGCAATGGGATATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS TCA 72 bp | GTCATCACTGCTGTTTGGCTGTATTGTGCAAAACATTaGGTAAATGCAGGGAACACTCCTAGTACGGGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: VITAVWLYCAKH*VNAGNTPSTGV Trigger: CACACCCGTACTAGGAGTGTTCCCTGCATTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS GCA 72 bp | TTCAATGTCTTGAGCTTGGAACCCGATATATCCCATTaGTTTTACAATCGCAGGGTTTGGCTTGAGGGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: FNVLSLEPDISH*FYNRRVWLEGH Trigger: ATGCCCCTCAAGCCAAACCCTGCGATTGTAAAAGCAATGGGATATATCGGGTTCCAAGCTCAAGACATTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS GCA 72 bp | CTGAGGCACTGGTGTGGCCTTCTGTACTGTCATCACTaGTGTTTGGCTGTATTGTGCAAAACATTGAGTAAA | + |
|
Preference number: 6 (lower is better) Translates to: LRHWCGLLYCHH*CLAVLCKTLSK Trigger: TTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGACAGTACAGAAGGCCACACCAGTGCCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 72 bp | GGATGCACCATAACTTCAGCAACAGTGGGCCTAAGTTaGGGGTTGGCCGTCATTAAAAGACTAATCAGATCT | + |
|
Preference number: 6 (lower is better) Translates to: GCTITSATVGLS*GLAVIKRLIRS Trigger: AGATCTGATTAGTCTTTTAATGACGGCCAACCCCAAACTTAGGCCCACTGTTGCTGAAGTTATGGTGCATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 72 bp | ATATATCCCATTGCTTTTACAATCGCAGGGTTTGGCTaGAGGGGCATCTGTTCTTCACAAGGATCTGGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: IYPIAFTIAGFG*RGICSSQGSGN Trigger: GTTCCCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCAAACCCTGCGATTGTAAAAGCAATGGGATATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 72 bp | GGCCTTCTGTACTGTCATCACTGCTGTTTGGCTGTATaGTGCAAAACATTGAGTAAATGCAGGGAACACTCC | + |
|
Preference number: 6 (lower is better) Translates to: GLLYCHHCCLAV*CKTLSKCREHS Trigger: GGAGTGTTCCCTGCATTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGACAGTACAGAAGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS CAA 90 bp | AGAGGGAACAAAATACTTCCCTGCCAAAATTTGCCTTACCAGCTTTaGTATGCTGGCAGCATCAAACGGGACCTTTCCAGTTACCATAAA | + |
|
Preference number: 6 (lower is better) Translates to: RGNKILPCQNLPYQL*YAGSIKRDLSSYHK Trigger: TTTATGGTAACTGGAAAGGTCCCGTTTGATGCTGCCAGCATACAAAAGCTGGTAAGGCAAATTTTGGCAGGGAAGTATTTTGTTCCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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| CDS GCA 72 bp | CTTTTCTTACTAGTACTCCTTCCACAGACAGACATTTaGCTATTGGCAGATAATCTGAGACTCGTGGGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: LFLLVLLPQTDI*LLADNLRLVGS Trigger: TGAACCCACGAGTCTCAGATTATCTGCCAATAGGCAAATGTCTGTCTGTGGAAGGAGTACTAGTAAGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059824.7 ENSMUST00000162940.3 |
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