Pregenerated sensors for SMOK2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073458

Ensembl transcript IDs: ENSMUST00000080647.5, ENSMUST00000238835.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 90 bp	CTCTGGCTGGACCCAGAACATGATGCCTTTCCACAAGGTTCCCTTTaGCAGGTCCATGTCTATACATGGGTCCTTTCCAATACTATAACT	+
Preference number: 2 (lower is better) Translates to: LWLDPEHDAFPQGSL*QVHVYTWVLSNTIT Trigger: AGTTATAGTATTGGAAAGGACCCATGTATAGACATGGACCTGCAAAAGGGAACCTTGTGGAAAGGCATCATGTTCTGGGTCCAGCCAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
3UTR CAA 72 bp	GACCCAGAACATGATGCCTTTCCACAAGGTTCCCTTTaGCAGGTCCATGTCTATACATGGGTCCTTTCCAAT	+
Preference number: 4 (lower is better) Translates to: DPEHDAFPQGSL*QVHVYTWVLSN Trigger: ATTGGAAAGGACCCATGTATAGACATGGACCTGCAAAAGGGAACCTTGTGGAAAGGCATCATGTTCTGGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CCA 90 bp	GGTTTGCACCAATACTCCCTCTTTGGAATCATTTTGACAGCCACGTaGGTGCCTGTGAGGCGGTGTCGGGCCAGCTTCACCTTTGTGCTG	+
Preference number: 5 (lower is better) Translates to: GLHQYSLFGIILTAT*VPVRRCRASFTFVL Trigger: CAGCACAAAGGTGAAGCTGGCCCGACACCGCCTCACAGGCACCCACGTGGCTGTCAAAATGATTCCAAAGAGGGAGTATTGGTGCAAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS GCA 90 bp	TCACAAGGATCTGGGAACACCCCTGAGCCTTTTGTGACCCAGGGATaGATCATAACTTCAGCAACAGTGGGCCTAAGTTCAGGGTTGTCT	+
Preference number: 5 (lower is better) Translates to: SQGSGNTPEPFVTQG*IITSATVGLSSGLS Trigger: AGACAACCCTGAACTTAGGCCCACTGTTGCTGAAGTTATGATGCATCCCTGGGTCACAAAAGGCTCAGGGGTGTTCCCAGATCCTTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 90 bp	TTCTGTACTCTCGTCGCTGCTGTTTGGATGGATTATGCAAAAATTTaGGTTAATGCAGGGAACACTCCTAGTACAGGTGTGTGTTTGGTC	+
Preference number: 5 (lower is better) Translates to: FCTLVAAVWMDYAKI*VNAGNTPSTGVCLV Trigger: GACCAAACACACACCTGTACTAGGAGTGTTCCCTGCATTAACTCAAATTTTTGCATAATCCATCCAAACAGCAGCGACGAGAGTACAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 90 bp	TTCATCCTCCTGCAGGTAGCCAGCGTTTCTGATGTGTTGGTAAAGTaGTTTACCCTCACACAACTCCATAATGAGGTATACTTTCTTCTT	+
Preference number: 5 (lower is better) Translates to: FILLQVASVSDVLVK*FTLTQLHNEVYFLL Trigger: AAGAAGAAAGTATACCTCATTATGGAGTTGTGTGAGGGTAAATCACTTTACCAACACATCAGAAACGCTGGCTACCTGCAGGAGGATGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CAA 72 bp	TTCCTCATCGCATTTCCTATCTTGCTAGTCCAGCCCTaGATGCCTCTGGGCCAGCCTCTGCTGCGGACAGGC	+
Preference number: 6 (lower is better) Translates to: FLIAFPILLVQP*MPLGQPLLRTG Trigger: GCCTGTCCGCAGCAGAGGCTGGCCCAGAGGCATCAAGGGCTGGACTAGCAAGATAGGAAATGCGATGAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CCA 72 bp	CAATACTCCCTCTTTGGAATCATTTTGACAGCCACGTaGGTGCCTGTGAGGCGGTGTCGGGCCAGCTTCACC	+
Preference number: 6 (lower is better) Translates to: QYSLFGIILTAT*VPVRRCRASFT Trigger: GGTGAAGCTGGCCCGACACCGCCTCACAGGCACCCACGTGGCTGTCAAAATGATTCCAAAGAGGGAGTATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CAA 90 bp	TCAGACATGAGAGGTTTGCACCAATACTCCCTCTTTGGAATCATTTaGACAGCCACGTGGGTGCCTGTGAGGCGGTGTCGGGCCAGCTTC	+
Preference number: 6 (lower is better) Translates to: SDMRGLHQYSLFGII*TATWVPVRRCRASF Trigger: GAAGCTGGCCCGACACCGCCTCACAGGCACCCACGTGGCTGTCAAAATGATTCCAAAGAGGGAGTATTGGTGCAAACCTCTCATGTCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CAA 72 bp	AGAGGTTTGCACCAATACTCCCTCTTTGGAATCATTTaGACAGCCACGTGGGTGCCTGTGAGGCGGTGTCGG	+
Preference number: 6 (lower is better) Translates to: RGLHQYSLFGII*TATWVPVRRCR Trigger: CCGACACCGCCTCACAGGCACCCACGTGGCTGTCAAAATGATTCCAAAGAGGGAGTATTGGTGCAAACCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CAA 72 bp	ATACAGCAACAGAGCTTCCTCATCGCATTTCCTATCTaGCTAGTCCAGCCCTTGATGCCTCTGGGCCAGCCT	+
Preference number: 6 (lower is better) Translates to: IQQQSFLIAFPI*LVQPLMPLGQP Trigger: AGGCTGGCCCAGAGGCATCAAGGGCTGGACTAGCAAGATAGGAAATGCGATGAGGAAGCTCTGTTGCTGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CAA 72 bp	GGGAGACTCTCCTCTGCCCCAGGTGAGATGTCTCATTaGATGGGATACAGCAACAGAGCTTCCTCATCGCAT	+
Preference number: 6 (lower is better) Translates to: GRLSSAPGEMSH*MGYSNRASSSH Trigger: ATGCGATGAGGAAGCTCTGTTGCTGTATCCCATCAAATGAGACATCTCACCTGGGGCAGAGGAGAGTCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 72 bp	GGAGACTCTCCTCTGCCCCAGGTGAGATGTCTCATTTaGTGGGATACAGCAACAGAGCTTCCTCATCGCATT	+
Preference number: 6 (lower is better) Translates to: GDSPLPQVRCLI*WDTATELPHRI Trigger: AATGCGATGAGGAAGCTCTGTTGCTGTATCCCATCAAATGAGACATCTCACCTGGGGCAGAGGAGAGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS GCA 72 bp	TCTGGGAACACCCCTGAGCCTTTTGTGACCCAGGGATaGATCATAACTTCAGCAACAGTGGGCCTAAGTTCA	+
Preference number: 6 (lower is better) Translates to: SGNTPEPFVTQG*IITSATVGLSS Trigger: TGAACTTAGGCCCACTGTTGCTGAAGTTATGATGCATCCCTGGGTCACAAAAGGCTCAGGGGTGTTCCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CCA 72 bp	CTCAGACATGAGAGGTTTGCACCAATACTCCCTCTTTaGAATCATTTTGACAGCCACGTGGGTGCCTGTGAG	+
Preference number: 6 (lower is better) Translates to: LRHERFAPILPL*NHFDSHVGACE Trigger: CTCACAGGCACCCACGTGGCTGTCAAAATGATTCCAAAGAGGGAGTATTGGTGCAAACCTCTCATGTCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 72 bp	CTCGTGCTTCATCCTCCTGCAGGTAGCCAGCGTTTCTaGTGTGTTGGTAAAGTGATTTACCCTCACACAACT	+
Preference number: 6 (lower is better) Translates to: LVLHPPAGSQRF*CVGKVIYPHTT Trigger: AGTTGTGTGAGGGTAAATCACTTTACCAACACATCAGAAACGCTGGCTACCTGCAGGAGGATGAAGCACGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 72 bp	GATGATCGGCCATCATCAGTAACTCTGCCTCAGACATaGGAGGTTTGCACCAATACTCCCTCTTTGGAATCA	+
Preference number: 6 (lower is better) Translates to: DDRPSSVTLPQT*EVCTNTPSLES Trigger: TGATTCCAAAGAGGGAGTATTGGTGCAAACCTCTCATGTCTGAGGCAGAGTTACTGATGATGGCCGATCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS CAA 72 bp	GTTAATGCAGGGAACACTCCTAGTACAGGTGTGTGTTaGGTCCATTGTGGGTGTTATGTTAATCGGCCTGCT	+
Preference number: 6 (lower is better) Translates to: VNAGNTPSTGVC*VHCGCYVNRPA Trigger: AGCAGGCCGATTAACATAACACCCACAATGGACCAAACACACACCTGTACTAGGAGTGTTCCCTGCATTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS GCA 72 bp	TTCAATGTCTTGAGCTTGGAACCCAATATGTCCCATTaGTTTTACAATCGCAGGGTCTGGCTTGAGGGGTAT	+
Preference number: 6 (lower is better) Translates to: FNVLSLEPNMSH*FYNRRVWLEGY Trigger: ATACCCCTCAAGCCAGACCCTGCGATTGTAAAAGCAATGGGACATATTGGGTTCCAAGCTCAAGACATTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 72 bp	CTGCAGGTAGCCAGCGTTTCTGATGTGTTGGTAAAGTaGTTTACCCTCACACAACTCCATAATGAGGTATAC	+
Preference number: 6 (lower is better) Translates to: LQVASVSDVLVK*FTLTQLHNEVY Trigger: GTATACCTCATTATGGAGTTGTGTGAGGGTAAATCACTTTACCAACACATCAGAAACGCTGGCTACCTGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS TCA 72 bp	CTCGTCGCTGCTGTTTGGATGGATTATGCAAAAATTTaGGTTAATGCAGGGAACACTCCTAGTACAGGTGTG	+
Preference number: 6 (lower is better) Translates to: LVAAVWMDYAKI*VNAGNTPSTGV Trigger: CACACCTGTACTAGGAGTGTTCCCTGCATTAACTCAAATTTTTGCATAATCCATCCAAACAGCAGCGACGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS GCA 72 bp	ACTTTCCTGCAACAATTTGCTTCCGCAGCTTTTCTATaGTGGCAGCATCAAATGGGATCTTTCCAGTTACCA	+
Preference number: 6 (lower is better) Translates to: TFLQQFASAAFL*WQHQMGSFQLP Trigger: TGGTAACTGGAAAGATCCCATTTGATGCTGCCAGCATAGAAAAGCTGCGGAAGCAAATTGTTGCAGGAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2
CDS GCA 72 bp	CTTTTCTTACTAGTACTCCTTCCACAGACAGACATTTaGCTATTAGCAGATAATCTGAGACTCGTGGGTTCA	+
Preference number: 6 (lower is better) Translates to: LFLLVLLPQTDI*LLADNLRLVGS Trigger: TGAACCCACGAGTCTCAGATTATCTGCTAATAGGCAAATGTCTGTCTGTGGAAGGAGTACTAGTAAGAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080647.5 ENSMUST00000238835.2

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