RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMOC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021136

Ensembl transcript IDs: ENSMUST00000021564.11, ENSMUST00000110347.9, ENSMUST00000129362.2

Found 311 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATaGCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTG +
Preference number: 1 (lower is better)
Translates to: EGLVQVFSPLHHLLR*PTPAAAGEPCWCWV
Trigger: CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 90 bp TTCTCTGTGCACATTTCCTTCTGGCCAGGAAATGGGACTGGAGTCTaGTGGGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTC +
Preference number: 1 (lower is better)
Translates to: FSVHISFWPGNGTGV*WEGHPAPACCVRCF
Trigger: GAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCCCAGCAGACTCCAGTCCCATTTCCTGGCCAGAAGGAAATGTGCACAGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp TCTGTGCACATTTCCTTCTGGCCAGGAAATGGGACTGGAGTCTGCTaGGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGT +
Preference number: 1 (lower is better)
Translates to: SVHISFWPGNGTGVC*EGHPAPACCVRCFC
Trigger: ACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCCCAGCAGACTCCAGTCCCATTTCCTGGCCAGAAGGAAATGTGCACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp CATGCTGGCCAGCACAGGAACTGGGCTCCCCTCCTACCCAGCCAATaGCCAAGTGACTGGACTTTGACAGCTAATGGACCAGTACCCTCT +
Preference number: 1 (lower is better)
Translates to: HAGQHRNWAPLLPSQ*PSDWTLTANGPVPS
Trigger: AGAGGGTACTGGTCCATTAGCTGTCAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAGGGGAGCCCAGTTCCTGTGCTGGCCAGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp GCAGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTaGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTAAACAT +
Preference number: 1 (lower is better)
Translates to: AGEPCWCWVSFSSHA*GLTSHVLHGGHAKH
Trigger: ATGTTTAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp CAAGAGAAGGTGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTaGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACAGCGGG +
Preference number: 1 (lower is better)
Translates to: QEKVFFPPYHAGQGY*SSWDSMCDFHQDSG
Trigger: CCCGCTGTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACACCTTCTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 90 bp ACAGCATGTGTGACTTCCACCAGGACAGCGGGAACCTTCTGGAGCTaGGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACA +
Preference number: 1 (lower is better)
Translates to: TACVTSTRTAGTFWS*DFIESSSEKAMFPT
Trigger: TGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGCTCCAGAAGGTTCCCGCTGTCCTGGTGGAAGTCACACATGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp GAGCTACATGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTaGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAA +
Preference number: 1 (lower is better)
Translates to: ELHACGGSLVGLQKG*FRSSVLFTISSDAQ
Trigger: TTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCATGTAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp CAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTaGTCCATGCCTTCCAGACCCAAAATAGAGCAGGGTTTACCAGGG +
Preference number: 1 (lower is better)
Translates to: QAPRRLCSPHVGSIM*SMPSRPKIEQGLPG
Trigger: CCCTGGTAAACCCTGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp ATTATTCACTGTAGACTGCCAAGGGATCTGGATAGCATGGACATGTaGGCCACCGGAGATCTGAAATCCATGCTGGCCAGCACAGGAACT +
Preference number: 1 (lower is better)
Translates to: IIHCRLPRDLDSMDM*ATGDLKSMLASTGT
Trigger: AGTTCCTGTGCTGGCCAGCATGGATTTCAGATCTCCGGTGGCCCACATGTCCATGCTATCCAGATCCCTTGGCAGTCTACAGTGAATAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 90 bp TTGGCTGGTCAGATTCTAAACTCCTACATAAAGGTGGCTTCTCTGTaGACATTTCCTTCTGGCCAGGAAATGGGACTGGAGTCTGCTGGG +
Preference number: 1 (lower is better)
Translates to: LAGQILNSYIKVASL*TFPSGQEMGLESAG
Trigger: CCCAGCAGACTCCAGTCCCATTTCCTGGCCAGAAGGAAATGTGCACAGAGAAGCCACCTTTATGTAGGAGTTTAGAATCTGACCAGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp AACCACACAGCACAGCCTACGCCCATCTGTGAGAGAGAAGTTGGCTaGTCAGATTCTAAACTCCTACATAAAGGTGGCTTCTCTGTGCAC +
Preference number: 1 (lower is better)
Translates to: NHTAQPTPICEREVG*SDSKLLHKGGFSVH
Trigger: GTGCACAGAGAAGCCACCTTTATGTAGGAGTTTAGAATCTGACCAGCCAACTTCTCTCTCACAGATGGGCGTAGGCTGTGCTGTGTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 90 bp CACCTAGACAGAAAAAGTTGCTCATCTGCCCTGGTGCAATTCCGGTaGCACTCTGTGCAAAAGCCTAGAGTTCCCTATAGCTGGATCATC +
Preference number: 1 (lower is better)
Translates to: HLDRKSCSSALVQFR*HSVQKPRVPYSWII
Trigger: GATGATCCAGCTATAGGGAACTCTAGGCTTTTGCACAGAGTGTCACCGGAATTGCACCAGGGCAGATGAGCAACTTTTTCTGTCTAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 90 bp TGGCTGACCATGGAAGAGCTGCTAAGTATCACTTGCTGCTCTGACTaGAGGACCTCTGAATCAGCATGTCACCTAGACAGAAAAAGTTGC +
Preference number: 1 (lower is better)
Translates to: WLTMEELLSITCCSD*RTSESACHLDRKSC
Trigger: GCAACTTTTTCTGTCTAGGTGACATGCTGATTCAGAGGTCCTTCAGTCAGAGCAGCAAGTGATACTTAGCAGCTCTTCCATGGTCAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 90 bp TCTGAGGAAGCAGAAGTAAGGGACGCCACGTCAATTCAACAATTCTaGAAGTCCATGAGAAAAGCCAGAGGAATAAGAGCAACTCCGGGA +
Preference number: 1 (lower is better)
Translates to: SEEAEVRDATSIQQF*KSMRKARGIRATPG
Trigger: TCCCGGAGTTGCTCTTATTCCTCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTACTTCTGCTTCCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGGGGATCTGGATAGCATaGACATGTGGGCCACCGGAG +
Preference number: 2 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVGIWIA*TCGPPE
Trigger: CTCCGGTGGCCCACATGTCCATGCTATCCAGATCCC...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGAGGAGAGACCTGGACTaGGAGTCCAGAGGAAGTAGA +
Preference number: 2 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVRRDLD*ESRGSR
Trigger: TCTACTTCCTCTGGACTCCCAGTCCAGGTCTCTCCT...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCACTCCTACCCAGCCAATaGCCAAGTGACTGGACTTTG +
Preference number: 2 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPLLPSQ*PSDWTL
Trigger: CAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAG...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCGGGATCTGGATAGCATaGACATGTGGGCCACCGGAG +
Preference number: 2 (lower is better)
Translates to: GEPCWCWVSFSSHAWGLTGIWIA*TCGPPE
Trigger: CTCCGGTGGCCCACATGTCCATGCTATCCAGATCCC...GGTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGGACTGCCAAGGGATCTaGATAGCATGGACATGTGGG +
Preference number: 2 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVDCQGI*IAWTCG
Trigger: CCCACATGTCCATGCTATCCAGATCCCTTGGCAGTC...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR TCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAACTTGCTGCTCTGACTaGAGGACCTCTGAATCAGCA +
Preference number: 2 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPTCCSD*RTSESA
Trigger: TGCTGATTCAGAGGTCCTTCAGTCAGAGCAGCAAGT...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAGTGTTGGGAGCTACATaGTTGTGGAGGCTCTCTTGT +
Preference number: 2 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPVLGAT*LWRLSC
Trigger: ACAAGAGAGCCTCCACAAGCATGTAGCTCCCAACAC...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCATACAGGATACTGAGATaGAAACCCAGGGAAGGCAGG +
Preference number: 2 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPYRILR*KPREGR
Trigger: CCTGCCTTCCCTGGGTTTCCATCTCAGTATCCTGTA...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACGGGATCTGGATAGCATaGACATGTGGGCCACCGGAG +
Preference number: 2 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDGIWIA*TCGPPE
Trigger: CTCCGGTGGCCCACATGTCCATGCTATCCAGATCCC...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCGCAGGAGAACCCTGCTaGTGCTGGGTGTCCTTTTCC +
Preference number: 2 (lower is better)
Translates to: PRRLCSPHVGSIMWSMPSAGEPC*CWVSFS
Trigger: GGAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGC...GGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCGCTGCAGGAGAACCCTaGTGGTGCTGGGTGTCCTTT +
Preference number: 2 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGAAGEP*WCWVSF
Trigger: AAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGC...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGGCTGCAGGAGAACCCTaGTGGTGCTGGGTGTCCTTT +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQAAGEP*WCWVSF
Trigger: AAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGC...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCAGATGCCCAACACCTaGTGCTGCAGGAGAACCCTG +
Preference number: 2 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSQMPNT*CCRRTL
Trigger: CAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTG...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACAGGAGAGACCTGGACTaGGAGTCCAGAGGAAGTAGA +
Preference number: 2 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHRRDLD*ESRGSR
Trigger: TCTACTTCCTCTGGACTCCCAGTCCAGGTCTCTCCT...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCTCCTACCCAGCCAATaGCCAAGTGACTGGACTTTG +
Preference number: 2 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHLLPSQ*PSDWTL
Trigger: CAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAG...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCGTGGAGGCTCTCTTGTaGGTTTGCAGAAGGGCTGGT +
Preference number: 2 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGVEALL*VCRRAG
Trigger: ACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCAC...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 90 bp GGATGCATTTACAGGATACTGAGATGGAAACCCAGGGAAGGCAGGTaGAGGAGAGCAAGCCAGCAAAAGAACCAGTCCTGGCCTCCCTCA +
Preference number: 2 (lower is better)
Translates to: GCIYRILRWKPREGR*RRASQQKNQSWPPS
Trigger: TGAGGGAGGCCAGGACTGGTTCTTTTGCTGGCTTGCTCTCCTCAACCTGCCTTCCCTGGGTTTCCATCTCAGTATCCTGTAAATGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACTCCTCGGAGTTTCCATaGGCCTTTTGCTTTTTCCAC +
Preference number: 2 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHSSEFP*AFCFFH
Trigger: GTGGAAAAAGCAAAAGGCCCATGGAAACTCCGAGGA...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCATTAAAAGTGCAAACATaGCGGGCACCACTTATGTTA +
Preference number: 2 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPLKVQT*RAPLML
Trigger: TAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAA...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGCTCCTACCCAGCCAATaGCCAAGTGACTGGACTTTG +
Preference number: 2 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLLLPSQ*PSDWTL
Trigger: CAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAG...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCGGTTTGCAGAAGGGCTaGTTCAGGTCTTCAGTCCTC +
Preference number: 2 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGGLQKG*FRSSVL
Trigger: GAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACC...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGGGTTTGCAGAAGGGCTaGTTCAGGTCTTCAGTCCTC +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQGLQKG*FRSSVL
Trigger: GAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACC...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR TCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACTTGCTGCTCTGACTaGAGGACCTCTGAATCAGCA +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQTCCSD*RTSESA
Trigger: TGCTGATTCAGAGGTCCTTCAGTCAGAGCAGCAAGT...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR TCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACGCATTTACAGGATACTaGGATGGAAACCCAGGGAAG +
Preference number: 2 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDAFTGY*DGNPGK
Trigger: CTTCCCTGGGTTTCCATCTCAGTATCCTGTAAATGC...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGGTGTTGGGAGCTACATaGTTGTGGAGGCTCTCTTGT +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQVLGAT*LWRLSC
Trigger: ACAAGAGAGCCTCCACAAGCATGTAGCTCCCAACAC...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCGACTGCCAAGGGATCTaGATAGCATGGACATGTGGG +
Preference number: 2 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLDCQGI*IAWTCG
Trigger: CCCACATGTCCATGCTATCCAGATCCCTTGGCAGTC...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCGAACCCTGCTGGTGCTaGGTGTCCTTTTCCTCACAT +
Preference number: 2 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLEPCWC*VSFSSH
Trigger: ATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTC...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACTATGTTCCCCACATGTaGGCAGCATTATGTGGTCCA +
Preference number: 2 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDYVPHM*AALCGP
Trigger: TGGACCACATAATGCTGCCCACATGTGGGGAACATA...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR TCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGGCATTTACAGGATACTaGGATGGAAACCCAGGGAAG +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQAFTGY*DGNPGK
Trigger: CTTCCCTGGGTTTCCATCTCAGTATCCTGTAAATGC...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGACAGATGCCCAACACCTaGTGCTGCAGGAGAACCCTG +
Preference number: 2 (lower is better)
Translates to: VRDATSIQQFWKSMRKARQMPNT*CCRRTL
Trigger: CAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTG...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGAAAAAGTTGCTCATCTaGCCTGGTGCAATTCCGGTG +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQKKLLI*PGAIPV
Trigger: CACCGGAATTGCACCAGGGCAGATGAGCAACTTTTT...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATTTTCCTCACATGCTTaGGGTCTCACCTCTCATGTC +
Preference number: 2 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPFSSHA*GLTSHV
Trigger: GACATGAGAGGTGAGACCCCAAGCATGTGAGGAAAA...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGAGTTCCCTATAGCTaGATCATCGCTCCTATTCCT +
Preference number: 2 (lower is better)
Translates to: PRRLCSPHVGSIMWSMPSRVPYS*IIAPIP
Trigger: AGGAATAGGAGCGATGATCCAGCTATAGGGAACTCT...GGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCCAGGGTTTACCAGGGTaGATGCATTTACAGGATACT +
Preference number: 2 (lower is better)
Translates to: PRRLCSPHVGSIMWSMPSQGLPG*MHLQDT
Trigger: AGTATCCTGTAAATGCATCCACCCTGGTAAACCCTG...GGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 90 bp GGGAAAACCACACAGCACAGCCTACGCCCATCTGTGAGAGAGAAGTaGGCTGGTCAGATTCTAAACTCCTACATAAAGGTGGCTTCTCTG +
Preference number: 2 (lower is better)
Translates to: GKTTQHSLRPSVREK*AGQILNSYIKVASL
Trigger: CAGAGAAGCCACCTTTATGTAGGAGTTTAGAATCTGACCAGCCAACTTCTCTCTCACAGATGGGCGTAGGCTGTGCTGTGTGGTTTTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCATCCTCGGAGTTTCCATaGGCCTTTTGCTTTTTCCAC +
Preference number: 2 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRASSEFP*AFCFFH
Trigger: GTGGAAAAAGCAAAAGGCCCATGGAAACTCCGAGGA...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACTTAAAAGTGCAAACATaGCGGGCACCACTTATGTTA +
Preference number: 2 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHLKVQT*RAPLML
Trigger: TAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAA...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCACAATGGCCAAGTGACTaGACTTTGACAGCTAATGGA +
Preference number: 2 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPQWPSD*TLTANG
Trigger: TCCATTAGCTGTCAAAGTCCAGTCACTTGGCCATTG...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGCAGGGTTTACCAGGGTaGATGCATTTACAGGATACT +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQQGLPG*MHLQDT
Trigger: AGTATCCTGTAAATGCATCCACCCTGGTAAACCCTG...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 90 bp AGATGGAGGGAGAGCACGAAAGTAAAACCTAGTTGGACTCTAGTGTaGGGAGCTACATGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAA +
Preference number: 2 (lower is better)
Translates to: RWRESTKVKPSWTLV*GATCLWRLSCGFAE
Trigger: TTCTGCAAACCCACAAGAGAGCCTCCACAAGCATGTAGCTCCCAACACTAGAGTCCAACTAGGTTTTACTTTCGTGCTCTCCCTCCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGAGGTTTGCAGAAGGGCTaGTTCAGGTCTTCAGTCCTC +
Preference number: 2 (lower is better)
Translates to: VRDATSIQQFWKSMRKARGLQKG*FRSSVL
Trigger: GAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACC...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp TTTCCTCACATGCTTGGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTATTAAAAGTGCAAACATaGCGGGCACCACTTATGTTA +
Preference number: 2 (lower is better)
Translates to: FPHMLGVSPLMSYTGDMLLKVQT*RAPLML
Trigger: TAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAA...TAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGAAACAGCGATGTCGATaGCTGTACAAAAGATCTATA +
Preference number: 2 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQKQRCR*LYKRSI
Trigger: TATAGATCTTTTGTACAGGCATCGACATCGCTGTTT...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGATTTTCCTCACATGCTTaGGGTCTCACCTCTCATGTC +
Preference number: 2 (lower is better)
Translates to: VRDATSIQQFWKSMRKARFSSHA*GLTSHV
Trigger: GACATGAGAGGTGAGACCCCAAGCATGTGAGGAAAA...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCAAACAGCGATGTCGATaGCTGTACAAAAGATCTATA +
Preference number: 2 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLKQRCR*LYKRSI
Trigger: TATAGATCTTTTGTACAGGCATCGACATCGCTGTTT...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CCA 90 bp TGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTGGTCATCATGGGACAGCATCAATTCAACAATTCTaGAAGTCCATGAGAAAAGCC +
Preference number: 2 (lower is better)
Translates to: CSSHLTMQDRVTGHHGTASIQQF*KSMRKA
Trigger: GGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGA...TGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR GCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGAAAACAGCGATGTCGATaGCTGTACAAAAGATCTATA +
Preference number: 2 (lower is better)
Translates to: VRDATSIQQFWKSMRKARKQRCR*LYKRSI
Trigger: TATAGATCTTTTGTACAGGCATCGACATCGCTGTTT...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp ATTTCCTTCTGGCCAGGAAATGGGACTGGAGTCTGCTaGGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGG +
Preference number: 3 (lower is better)
Translates to: ISFWPGNGTGVC*EGHPAPACCVR
Trigger: CCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCCCAGCAGACTCCAGTCCCATTTCCTGGCCAGAAGGAAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp GGAGTCTGCTGGGAGGGCCATCCAGCTCCAGCCTGCTaGGTGCGGTGTTTCTGTTCAAGGCTCCAAGAGAAG +
Preference number: 3 (lower is better)
Translates to: GVCWEGHPAPAC*VRCFCSRLQEK
Trigger: CTTCTCTTGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCCCAGCAGACTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp ACTGGAGTCTGCTGGGAGGGCCATCCAGCTCCAGCCTaGTGCGTGCGGTGTTTCTGTTCAAGGCTCCAAGAG +
Preference number: 3 (lower is better)
Translates to: TGVCWEGHPAPA*CVRCFCSRLQE
Trigger: CTCTTGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCCCAGCAGACTCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp TGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTaGTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTC +
Preference number: 3 (lower is better)
Translates to: CPTPAAAGEPCW*WVSFSSHAWGL
Trigger: GAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp TCTGCTGGGAGGGCCATCCAGCTCCAGCCTGCTGCGTaGGGTGTTTCTGTTCAAGGCTCCAAGAGAAGGTGT +
Preference number: 3 (lower is better)
Translates to: SAGRAIQLQPAA*GVSVQGSKRRC
Trigger: ACACCTTCTCTTGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCCCAGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp CCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTaGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACC +
Preference number: 3 (lower is better)
Translates to: PTPAAAGEPCWC*VSFSSHAWGLT
Trigger: GGTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp CTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTaGTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGG +
Preference number: 3 (lower is better)
Translates to: LRCPTPAAAGEP*WCWVSFSSHAW
Trigger: CCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp TCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTaGTGCAGGAGAACCCTGCTGGTGCTGGGTGTCCTT +
Preference number: 3 (lower is better)
Translates to: SSSPSPQMPNTC*CRRTLLVLGVL
Trigger: AAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp CCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTaGGGTCTCACCTCTCATGTCCTACACGGGGGACAT +
Preference number: 3 (lower is better)
Translates to: PCWCWVSFSSHA*GLTSHVLHGGH
Trigger: ATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp AGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTaGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGT +
Preference number: 3 (lower is better)
Translates to: RCPTPAAAGEPC*CWVSFSSHAWG
Trigger: ACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp TCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTaGAGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTC +
Preference number: 3 (lower is better)
Translates to: SSPSPQMPNTCC*RRTLLVLGVLF
Trigger: GAAAAGGACACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp GTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATaGCCAACACCTGCTGCTGCAGGAGAACCCTGCTGG +
Preference number: 3 (lower is better)
Translates to: VQVFSPLHHLLR*PTPAAAGEPCW
Trigger: CCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp TGGGCTCCCCTCCTACCCAGCCAATGGCCAAGTGACTaGACTTTGACAGCTAATGGACCAGTACCCTCTTCC +
Preference number: 3 (lower is better)
Translates to: WAPLLPSQWPSD*TLTANGPVPSS
Trigger: GGAAGAGGGTACTGGTCCATTAGCTGTCAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAGGGGAGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp CAGCACAGGAACTGGGCTCCCCTCCTACCCAGCCAATaGCCAAGTGACTGGACTTTGACAGCTAATGGACCA +
Preference number: 3 (lower is better)
Translates to: QHRNWAPLLPSQ*PSDWTLTANGP
Trigger: TGGTCCATTAGCTGTCAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAGGGGAGCCCAGTTCCTGTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 72 bp CCCTCCTACCCAGCCAATGGCCAAGTGACTGGACTTTaGCAGCTAATGGACCAGTACCCTCTTCCCACCAGA +
Preference number: 3 (lower is better)
Translates to: PSYPANGQVTGL*QLMDQYPLPTR
Trigger: TCTGGTGGGAAGAGGGTACTGGTCCATTAGCTGTCAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 72 bp AGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTaGCTTCCACCAGGACAGCGGGAACCTTCTGGAGCT +
Preference number: 3 (lower is better)
Translates to: RTGLLVIMGQHV*LPPGQREPSGA
Trigger: AGCTCCAGAAGGTTCCCGCTGTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp TGTAGACTGCCAAGGGATCTGGATAGCATGGACATGTaGGCCACCGGAGATCTGAAATCCATGCTGGCCAGC +
Preference number: 3 (lower is better)
Translates to: CRLPRDLDSMDM*ATGDLKSMLAS
Trigger: GCTGGCCAGCATGGATTTCAGATCTCCGGTGGCCCACATGTCCATGCTATCCAGATCCCTTGGCAGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CAA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCCTTGTGGAGGCTCTCTaGTGGGTTTGCAGAAGGGCT +
Preference number: 3 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGLVEAL*WVCRRA
Trigger: AGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAG...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CAA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGCTTGTGGAGGCTCTCTaGTGGGTTTGCAGAAGGGCT +
Preference number: 3 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQLVEAL*WVCRRA
Trigger: AGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAG...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 72 bp GTGACTTCCACCAGGACAGCGGGAACCTTCTGGAGCTaGGACTTCATCGAATCAAGCTCCGAGAAGGCTATG +
Preference number: 3 (lower is better)
Translates to: VTSTRTAGTFWS*DFIESSSEKAM
Trigger: CATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGCTCCAGAAGGTTCCCGCTGTCCTGGTGGAAGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp CGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTaGGCAGCATTATGTGGTCCATGCCTTCCAGACCCA +
Preference number: 3 (lower is better)
Translates to: RIKLREGYVPHM*AALCGPCLPDP
Trigger: TGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp CTACATAAAGGTGGCTTCTCTGTGCACATTTCCTTCTaGCCAGGAAATGGGACTGGAGTCTGCTGGGAGGGC +
Preference number: 3 (lower is better)
Translates to: LHKGGFSVHISF*PGNGTGVCWEG
Trigger: GCCCTCCCAGCAGACTCCAGTCCCATTTCCTGGCCAGAAGGAAATGTGCACAGAGAAGCCACCTTTATGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp GTGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTaGTCATCATGGGACAGCATGTGTGACTTCCACCAG +
Preference number: 3 (lower is better)
Translates to: VFFPPYHAGQGY*SSWDSMCDFHQ
Trigger: CTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CAA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTTTTCCTCACATGCTaGGGGTCTCACCTCTCATGT +
Preference number: 3 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHLFLTC*GSHLSC
Trigger: ACATGAGAGGTGAGACCCCAAGCATGTGAGGAAAAG...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CAA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGCTTTTCCTCACATGCTaGGGGTCTCACCTCTCATGT +
Preference number: 3 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLLFLTC*GSHLSC
Trigger: ACATGAGAGGTGAGACCCCAAGCATGTGAGGAAAAG...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CAA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGCCTAGACAGAAAAAGTaGCTCATCTGCCCTGGTGCA +
Preference number: 3 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQPRQKK*LICPGA
Trigger: TGCACCAGGGCAGATGAGCAACTTTTTCTGTCTAGG...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR-3UTR CAA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCAAGTTGGACTCTAGTGTaGGGAGCTACATGCTTGTGG +
Preference number: 3 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRASWTLV*GATCLW
Trigger: CCACAAGCATGTAGCTCCCAACACTAGAGTCCAACT...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp AAGGCTCCAAGAGAAGGTGTTCTTCCCACCTTACCATaGAGGACAGGGTTACTGGTCATCATGGGACAGCAT +
Preference number: 3 (lower is better)
Translates to: KAPREGVLPTLP*RTGLLVIMGQH
Trigger: ATGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACACCTTCTCTTGGAGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp GTTTACCAGGGTGGATGCATTTACAGGATACTGAGATaGAAACCCAGGGAAGGCAGGTTGAGGAGAGCAAGC +
Preference number: 3 (lower is better)
Translates to: VYQGGCIYRILR*KPREGRLRRAS
Trigger: GCTTGCTCTCCTCAACCTGCCTTCCCTGGGTTTCCATCTCAGTATCCTGTAAATGCATCCACCCTGGTAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp AGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTaGTCCATGCCTTCCAGACCCAAAATAGAGCAGGGT +
Preference number: 3 (lower is better)
Translates to: RRLCSPHVGSIM*SMPSRPKIEQG
Trigger: ACCCTGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 72 bp AGGGCTCCCATCTATTCTCTCAGAGTCCATATACAGTaGAACTTGGGGAAGCTAAGGAGAGACCTGGACTGG +
Preference number: 3 (lower is better)
Translates to: RAPIYSLRVHIQ*NLGKLRRDLDW
Trigger: CCAGTCCAGGTCTCTCCTTAGCTTCCCCAAGTTTCACTGTATATGGACTCTGAGAGAATAGATGGGAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp AATGGACCAGTACCCTCTTCCCACCAGAAGAAAACATaGTATCCACAGCACAAGCACAGGGCTCCCATCTAT +
Preference number: 3 (lower is better)
Translates to: NGPVPSSHQKKT*YPQHKHRAPIY
Trigger: ATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGGGAAGAGGGTACTGGTCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp GCACAGCCTACGCCCATCTGTGAGAGAGAAGTTGGCTaGTCAGATTCTAAACTCCTACATAAAGGTGGCTTC +
Preference number: 3 (lower is better)
Translates to: AQPTPICEREVG*SDSKLLHKGGF
Trigger: GAAGCCACCTTTATGTAGGAGTTTAGAATCTGACCAGCCAACTTCTCTCTCACAGATGGGCGTAGGCTGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp AAGAGATGGAGGGAGAGCACGAAAGTAAAACCTAGTTaGACTCTAGTGTTGGGAGCTACATGCTTGTGGAGG +
Preference number: 3 (lower is better)
Translates to: KRWRESTKVKPS*TLVLGATCLWR
Trigger: CCTCCACAAGCATGTAGCTCCCAACACTAGAGTCCAACTAGGTTTTACTTTCGTGCTCTCCCTCCATCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR TCA 72 bp ATGGAAGAGCTGCTAAGTATCACTTGCTGCTCTGACTaGAGGACCTCTGAATCAGCATGTCACCTAGACAGA +
Preference number: 3 (lower is better)
Translates to: MEELLSITCCSD*RTSESACHLDR
Trigger: TCTGTCTAGGTGACATGCTGATTCAGAGGTCCTTCAGTCAGAGCAGCAAGTGATACTTAGCAGCTCTTCCAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp ATCAGCATGTCACCTAGACAGAAAAAGTTGCTCATCTaGCCTGGTGCAATTCCGGTGACACTCTGTGCAAAA +
Preference number: 3 (lower is better)
Translates to: ISMSPRQKKLLI*PGAIPVTLCAK
Trigger: TTTTGCACAGAGTGTCACCGGAATTGCACCAGGGCAGATGAGCAACTTTTTCTGTCTAGGTGACATGCTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR GCA 72 bp CAGATTCTAAACTCCTACATAAAGGTGGCTTCTCTGTaGACATTTCCTTCTGGCCAGGAAATGGGACTGGAG +
Preference number: 3 (lower is better)
Translates to: QILNSYIKVASL*TFPSGQEMGLE
Trigger: CTCCAGTCCCATTTCCTGGCCAGAAGGAAATGTGCACAGAGAAGCCACCTTTATGTAGGAGTTTAGAATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CCA 72 bp GCAGAAGTAAGGGACGCCACGTCAATTCAACAATTCTaGAAGTCCATGAGAAAAGCCAGAGGAATAAGAGCA +
Preference number: 3 (lower is better)
Translates to: AEVRDATSIQQF*KSMRKARGIRA
Trigger: TGCTCTTATTCCTCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTACTTCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACGCAGCAAGTGGGGCGTaGGCAGACGGACGCGCGCGG +
Preference number: 4 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHAASGA*ADGRAR
Trigger: CCGCGCGCGTCCGTCTGCTCACGCCCCACTTGCTGC...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTGCAGCAAGTGGGGCGTaGGCAGACGGACGCGCGCGG +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSAASGA*ADGRAR
Trigger: CCGCGCGCGTCCGTCTGCTCACGCCCCACTTGCTGC...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAGGTCGCAGTAGTCGGTaGAGCGCCGGGCACATTTCT +
Preference number: 4 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPGRSSR*SAGHIS
Trigger: AGAAATGTGCCCGGCGCTTCACCGACTACTGCGACC...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCAGCAGCAAGTGGGGCGTaGGCAGACGGACGCGCGCGG +
Preference number: 4 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRAAASGA*ADGRAR
Trigger: CCGCGCGCGTCCGTCTGCTCACGCCCCACTTGCTGC...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCCCTCTCGGGGATTCTaGCGCGCCTCTTCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHPSRGF*RASSRA
Trigger: TGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGG...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGCCATCGAACACAGGTTaGGTCTCCATCGTGGGCGTG +
Preference number: 4 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVPSNTG*VSIVGV
Trigger: CACGCCCACGATGGAGACCCAACCTGTGTTCGATGG...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAACAAACACAGCCTCCTaGGGCTTCTTGGCCTGTTCC +
Preference number: 4 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPTNTAS*GFLACS
Trigger: GGAACAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGT...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGCTGGGTCTCGGCACTTaGCTCTCTGGTACTCACACA +
Preference number: 4 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVLGLGT*LSGTHT
Trigger: TGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAG...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGTCTGGTACTCACACATaGACTCGTAGGACCTGCCGT +
Preference number: 4 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVSGTHT*TRRTCR
Trigger: ACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGA...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACGACCACGGCCAGGGCTaGGTCTCGGCACTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHDHGQG*VSALGS
Trigger: AGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTC...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TTTCCTCACATGCTTGGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTAGACCACGGCCAGGGCTaGGTCTCGGCACTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: FPHMLGVSPLMSYTGDMLDHGQG*VSALGS
Trigger: AGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTC...TAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCACCCTTCAGGACAACCTaGCAACTCCCTGTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPPFRTT*QLPVLE
Trigger: TTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGG...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCGCTGAGGGTTAGGTGTCTGACGGTCAGTCCTGTCTCCTCGGAGTTTCCATGGTCCAGTGGGCGCTGCTaGGTTAATGGCCTGAACCAT +
Preference number: 4 (lower is better)
Translates to: ALRVRCLTVSPVSSEFPWSSGRC*VNGLNH
Trigger: ATGGTTCAGGCCATTAACTCAGCAGCGCCCACTGGA...CCATGGAAACTCCGAGGAGACAGGACTGACCGTCAGACACCTAACCCTCAGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTGCTGGGGTCTGGCTCTaGGAACCTCCCACCTCCAGT +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSAGVWL*EPPTSS
Trigger: ACTGGAGGTGGGAGGTTCTCAGAGCCAGACCCCAGC...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACGGTCGCAGTAGTCGGTaGAGCGCCGGGCACATTTCT +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDGRSSR*SAGHIS
Trigger: AGAAATGTGCCCGGCGCTTCACCGACTACTGCGACC...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAGCTCAGGCAGTGAGATaGCCTTATCCTTGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPAQAVR*PYPCSG
Trigger: ACCTGAACAAGGATAAGGTCATCTCACTGCCTGAGC...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCACCCTCTCGGGGATTCTaGCGCGCCTCTTCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRAPSRGF*RASSRA
Trigger: TGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGG...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCCGTCAGAGGCGCAGATaGGCTTGGGCTGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGRQRRR*AWAESW
Trigger: CCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACG...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCGACCACGGCCAGGGCTaGGTCTCGGCACTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLDHGQG*VSALGS
Trigger: AGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTC...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCCTCCTGAGGCTTCTTaGCCTGTTCCAAGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHPPEAS*PVPRPE
Trigger: CTCAGGCCTTGGAACAGGCCAAGAAGCCTCAGGAGG...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCCATCGAACACAGGTTaGGTCTCCATCGTGGGCGTG +
Preference number: 4 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHPSNTG*VSIVGV
Trigger: CACGCCCACGATGGAGACCCAACCTGTGTTCGATGG...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCACCTCCAGGGTGTGGCTaGGGTCTGGCTCTGAGAACC +
Preference number: 4 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPPPGCG*GLALRT
Trigger: GGTTCTCAGAGCCAGACCCCAGCCACACCCTGGAGG...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTGGTCATCATGGGACAGCACAGATGGGCTTGGGCTaGGTCCTGGGACAGTGTGGG +
Preference number: 4 (lower is better)
Translates to: CSSHLTMQDRVTGHHGTAQMGLG*VLGQCG
Trigger: CCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTG...TGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCGGCACTGCACCTGTGTaGAGGAACCATCCTCGCCAC +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGGTAPV*RNHPRH
Trigger: GTGGCGAGGATGGTTCCTTCACACAGGTGCAGTGCC...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACGGCACTGCACCTGTGTaGAGGAACCATCCTCGCCAC +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHGTAPV*RNHPRH
Trigger: GTGGCGAGGATGGTTCCTTCACACAGGTGCAGTGCC...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTGGCACTGCACCTGTGTaGAGGAACCATCCTCGCCAC +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSGTAPV*RNHPRH
Trigger: GTGGCGAGGATGGTTCCTTCACACAGGTGCAGTGCC...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCAGCTTGCCATCTGGGGTaGCACACCAGCAGTACCCTG +
Preference number: 4 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPACHLG*HTSSTL
Trigger: CAGGGTACTGCTGGTGTGTCACCCCAGATGGCAAGC...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGATAAGGTGGGGGCTGTaGTTTCATCTCCATCGAACA +
Preference number: 4 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVIRWGL*FHLHRT
Trigger: TGTTCGATGGAGATGAAATCACAGCCCCCACCTTAT...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCAGCTGGGGTCTGGCTCTaGGAACCTCCCACCTCCAGT +
Preference number: 4 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRAAGVWL*EPPTSS
Trigger: ACTGGAGGTGGGAGGTTCTCAGAGCCAGACCCCAGC...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCCCTGCTCGTTTTCCCTaGGGGAAGCTGCCAAGGCTA +
Preference number: 4 (lower is better)
Translates to: PRRLCSPHVGSIMWSMPSPARFP*GKLPRL
Trigger: TAGCCTTGGCAGCTTCCCTCAGGGAAAACGAGCAGG...GGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR GCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGTGGACTCGTAGGACCTaGCGTCAGAGGCGCAGATGG +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLWTRRT*RQRRRW
Trigger: CCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCA...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACAGGCGCAGATGGGCTTaGGCTGAGTCCTGGGACAGT +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHRRRWA*AESWDS
Trigger: ACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCT...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCCTCCAGGGTGTGGCTaGGGTCTGGCTCTGAGAACC +
Preference number: 4 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLPPGCG*GLALRT
Trigger: GGTTCTCAGAGCCAGACCCCAGCCACACCCTGGAGG...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 72 bp CCCCTCCTACCCAGCCAATGGCCAAGTGACTGGACTTaGACAGCTAATGGACCAGTACCCTCTTCCCACCAG +
Preference number: 4 (lower is better)
Translates to: PLLPSQWPSDWT*TANGPVPSSHQ
Trigger: CTGGTGGGAAGAGGGTACTGGTCCATTAGCTGTCAAAGTCCAGTCACTTGGCCATTGGCTGGGTAGGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTGGTCATCATGGGACAGCAGCTTGCCATCTGGGGTaGCACACCAGCAGTACCCTG +
Preference number: 4 (lower is better)
Translates to: CSSHLTMQDRVTGHHGTAACHLG*HTSSTL
Trigger: CAGGGTACTGCTGGTGTGTCACCCCAGATGGCAAGC...TGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGATCATCTTTTCTTCCTaGATTACCCTGGCTCAAGGG +
Preference number: 4 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVIIFSS*ITLAQG
Trigger: CCCTTGAGCCAGGGTAATTCAGGAAGAAAAGATGAT...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACTGCTATCCAGCTGGCTaGAGTACCAGTGTGCCACTC +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDCYPAG*STSVPL
Trigger: GAGTGGCACACTGGTACTTCAGCCAGCTGGATAGCA...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCGCTCAGGCAGTGAGATaGCCTTATCCTTGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: GEPCWCWVSFSSHAWGLTAQAVR*PYPCSG
Trigger: ACCTGAACAAGGATAAGGTCATCTCACTGCCTGAGC...GGTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGCCTGCTCGTTTTCCCTaGGGGAAGCTGCCAAGGCTA +
Preference number: 4 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQPARFP*GKLPRL
Trigger: TAGCCTTGGCAGCTTCCCTCAGGGAAAACGAGCAGG...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCAACACGAGCAGCAAGTaGGGCGTGAGCAGACGGACG +
Preference number: 4 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLNTSSK*GVSRRT
Trigger: CGTCCGTCTGCTCACGCCCCACTTGCTGCTCGTGTT...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTGGTCATCATGGGACAGCAAGGCGCAGATGGGCTTaGGCTGAGTCCTGGGACAGT +
Preference number: 4 (lower is better)
Translates to: CSSHLTMQDRVTGHHGTARRRWA*AESWDS
Trigger: ACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCT...TGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCCGTCAGAGGCGCAGATaGGCTTGGGCTGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFRQRRR*AWAESW
Trigger: CCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACG...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACCGGCACTTGGCTCTCTaGTACTCACACATGGACTCG +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDRHLAL*YSHMDS
Trigger: CGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCG...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACCTGGGTCTCGGCACTTaGCTCTCTGGTACTCACACA +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDLGLGT*LSGTHT
Trigger: TGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAG...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCCTGAGGCTTCTTaGCCTGTTCCAAGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSPPEAS*PVPRPE
Trigger: CTCAGGCCTTGGAACAGGCCAAGAAGCCTCAGGAGG...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACGATGGGCTTGCCATCTaGGGTGACACACCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDDGLAI*GDTPAV
Trigger: TACTGCTGGTGTGTCACCCCAGATGGCAAGCCCATC...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATCAGATGGGCTTGGGCTaGGTCCTGGGACAGTGTGGG +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYQMGLG*VLGQCG
Trigger: CCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTG...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACACAAACACAGCCTCCTaGGGCTTCTTGGCCTGTTCC +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHTNTAS*GFLACS
Trigger: GGAACAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGT...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCGCAACTCCCTGTCCTTaGAAGGGTCATCGGCCTCTA +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGATPCP*KGHRPL
Trigger: TAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGC...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTGCAACTCCCTGTCCTTaGAAGGGTCATCGGCCTCTA +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSATPCP*KGHRPL
Trigger: TAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGC...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACGCAACTCCCTGTCCTTaGAAGGGTCATCGGCCTCTA +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHATPCP*KGHRPL
Trigger: TAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGC...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACTCCAGTGGGCGCTGCTaGGTTAATGGCCTGAACCAT +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHSSGRC*VNGLNH
Trigger: ATGGTTCAGGCCATTAACTCAGCAGCGCCCACTGGA...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCTCCAGTGGGCGCTGCTaGGTTAATGGCCTGAACCAT +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGSSGRC*VNGLNH
Trigger: ATGGTTCAGGCCATTAACTCAGCAGCGCCCACTGGA...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGGCTGGGGTCTGGCTCTaGGAACCTCCCACCTCCAGT +
Preference number: 4 (lower is better)
Translates to: RKHAIHSTSTGLPSILSEAGVWL*EPPTSS
Trigger: ACTGGAGGTGGGAGGTTCTCAGAGCCAGACCCCAGC...CTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACTGCTATCCAGCTGGCTaGAGTACCAGTGTGCCACTC +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHCYPAG*STSVPL
Trigger: GAGTGGCACACTGGTACTTCAGCCAGCTGGATAGCA...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCGGTCGCAGTAGTCGGTaGAGCGCCGGGCACATTTCT +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFGRSSR*SAGHIS
Trigger: AGAAATGTGCCCGGCGCTTCACCGACTACTGCGACC...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACGCTCAGGCAGTGAGATaGCCTTATCCTTGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHAQAVR*PYPCSG
Trigger: ACCTGAACAAGGATAAGGTCATCTCACTGCCTGAGC...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGACCCTCTCGGGGATTCTaGCGCGCCTCTTCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: VRDATSIQQFWKSMRKARPSRGF*RASSRA
Trigger: TGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGG...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCAACTCGGGGATCACAATaGCCTCTCGGGGATTCTGCC +
Preference number: 4 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRATRGSQ*PLGDSA
Trigger: GGCAGAATCCCCGAGAGGGCATTGTGATCCCCGAGT...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp CCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCTTCCCTGAGGGAAGCTaGCAAGGCTACCACCTTCTT +
Preference number: 4 (lower is better)
Translates to: PRRLCSPHVGSIMWSMPSFPEGS*QGYHLL
Trigger: AAGAAGGTGGTAGCCTTGGCAGCTTCCCTCAGGGAA...GGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR CCA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCACGGCACTTGGCTCTCTaGTACTCACACATGGACTCG +
Preference number: 4 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPRHLAL*YSHMDS
Trigger: CGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCG...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGGGTCTCGGCACTTaGCTCTCTGGTACTCACACA +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHLGLGT*LSGTHT
Trigger: TGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAG...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACAGGCGACACTTGCTCTaGCCAGCATCTTTGCATCGA +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDRRHLL*PASLHR
Trigger: TCGATGCAAAGATGCTGGCCAGAGCAAGTGTCGCCT...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCATCCTCGCCACACTCTaGGACAAACACAGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGILATL*DKHSLL
Trigger: CAGGAGGCTGTGTTTGTCCCAGAGTGTGGCGAGGAT...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGGATGGGCTTGCCATCTaGGGTGACACACCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLDGLAI*GDTPAV
Trigger: TACTGCTGGTGTGTCACCCCAGATGGCAAGCCCATC...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACCCCTTCAGGACAACCTaGCAACTCCCTGTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDPFRTT*QLPVLE
Trigger: TTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGG...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGCCTCCAGGGTGTGGCTaGGGTCTGGCTCTGAGAACC +
Preference number: 4 (lower is better)
Translates to: RKHAIHSTSTGLPSILSEPPGCG*GLALRT
Trigger: GGTTCTCAGAGCCAGACCCCAGCCACACCCTGGAGG...CTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGGCTGAGTTAATGGCCTaGACCATGTCTGTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQAELMA*TMSVVR
Trigger: CCTCACCACAGACATGGTTCAGGCCATTAACTCAGC...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGGCTGAGTTAATGGCCTaGACCATGTCTGTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLAELMA*TMSVVR
Trigger: CCTCACCACAGACATGGTTCAGGCCATTAACTCAGC...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACTCTTTACATAGCGCTTaGACGGCTTCATCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDSLHSA*TASSPA
Trigger: AGCGGGAGATGAAGCCGTTCAAGCGCTATGTAAAGA...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATTGGACTCGTAGGACCTaGCGTCAGAGGCGCAGATGG +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYWTRRT*RQRRRW
Trigger: CCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCA...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp AGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTGGACTCGTAGGACCTaGCGTCAGAGGCGCAGATGG +
Preference number: 4 (lower is better)
Translates to: RKHAIHSTSTGLPSILSEWTRRT*RQRRRW
Trigger: CCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCA...CTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp TTTCCTCACATGCTTGGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTAGAACGGGTTTGTGCCTaGTCGTTTTCCCTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: FPHMLGVSPLMSYTGDMLERVCA*SFSLRE
Trigger: TTCCCTCAGGGAAAACGAGCAGGCACAAACCCGTTC...TAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR GCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTGAACGGGTTTGTGCCTaGTCGTTTTCCCTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSERVCA*SFSLRE
Trigger: TTCCCTCAGGGAAAACGAGCAGGCACAAACCCGTTC...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR CCA 90 bp AGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGAACACGAGCAGCAAGTaGGGCGTGAGCAGACGGACG +
Preference number: 4 (lower is better)
Translates to: RKHAIHSTSTGLPSILSENTSSK*GVSRRT
Trigger: CGTCCGTCTGCTCACGCCCCACTTGCTGCTCGTGTT...CTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATAGGCGCAGATGGGCTTaGGCTGAGTCCTGGGACAGT +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYRRRWA*AESWDS
Trigger: ACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCT...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGACGTCAGAGGCGCAGATaGGCTTGGGCTGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: VRDATSIQQFWKSMRKARRQRRR*AWAESW
Trigger: CCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACG...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCTCTGGTACTCACACATaGACTCGTAGGACCTGCCGT +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGSGTHT*TRRTCR
Trigger: ACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGA...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGAGGCGACACTTGCTCTaGCCAGCATCTTTGCATCGA +
Preference number: 4 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQRRHLL*PASLHR
Trigger: TCGATGCAAAGATGCTGGCCAGAGCAAGTGTCGCCT...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCATCCTCGCCACACTCTaGGACAAACACAGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLILATL*DKHSLL
Trigger: CAGGAGGCTGTGTTTGTCCCAGAGTGTGGCGAGGAT...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CCGAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCCTTCCTGAATTACCCTaGCTCAAGGGCTTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: PRRLCSPHVGSIMWSMPSLPELP*LKGLSV
Trigger: TACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAG...GGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCCCATCGAACACAGGTTaGGTCTCCATCGTGGGCGTG +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFPSNTG*VSIVGV
Trigger: CACGCCCACGATGGAGACCCAACCTGTGTTCGATGG...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCATCCTGGTCACAGGAATaGACTTTCTCTGAATTTCTT +
Preference number: 4 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPSWSQE*TFSEFL
Trigger: AAGAAATTCAGAGAAAGTCCATTCCTGTGACCAGGA...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCACCAACAGTAGCCTGTaGATTGGTGGCATTGCACCG +
Preference number: 4 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGTNSSL*IGGIAP
Trigger: CGGTGCAATGCCACCAATCCACAGGCTACTGTTGGT...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 72 bp TCTAGTGTTGGGAGCTACATGCTTGTGGAGGCTCTCTaGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAG +
Preference number: 4 (lower is better)
Translates to: SSVGSYMLVEAL*WVCRRAGSGLQ
Trigger: CTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCATGTAGCTCCCAACACTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 72 bp TACAGGATACTGAGATGGAAACCCAGGGAAGGCAGGTaGAGGAGAGCAAGCCAGCAAAAGAACCAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: YRILRWKPREGR*RRASQQKNQSW
Trigger: CCAGGACTGGTTCTTTTGCTGGCTTGCTCTCCTCAACCTGCCTTCCCTGGGTTTCCATCTCAGTATCCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCACAAACACAGCCTCCTaGGGCTTCTTGGCCTGTTCC +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFTNTAS*GFLACS
Trigger: GGAACAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGT...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCGTCGGTAACTGGACCTaGACATACAGGAGTTTTATT +
Preference number: 4 (lower is better)
Translates to: GEPCWCWVSFSSHAWGLTVGNWT*TYRSFI
Trigger: AATAAAACTCCTGTATGTTCAGGTCCAGTTACCGAC...GGTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTGCTATCCAGCTGGCTaGAGTACCAGTGTGCCACTC +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFCYPAG*STSVPL
Trigger: GAGTGGCACACTGGTACTTCAGCCAGCTGGATAGCA...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp AGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGACTCGGGGATCACAATaGCCTCTCGGGGATTCTGCC +
Preference number: 4 (lower is better)
Translates to: RKHAIHSTSTGLPSILSETRGSQ*PLGDSA
Trigger: GGCAGAATCCCCGAGAGGGCATTGTGATCCCCGAGT...CTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCATCCTCGCCACACTCTaGGACAAACACAGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFILATL*DKHSLL
Trigger: CAGGAGGCTGTGTTTGTCCCAGAGTGTGGCGAGGAT...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACTACCCTGTGTACGTATaGCACTGCACCTGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHYPVYV*HCTCVK
Trigger: CTTCACACAGGTGCAGTGCCATACGTACACAGGGTA...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGTACCCTGTGTACGTATaGCACTGCACCTGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLYPVYV*HCTCVK
Trigger: CTTCACACAGGTGCAGTGCCATACGTACACAGGGTA...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCACCAACAGTAGCCTGTaGATTGGTGGCATTGCACCG +
Preference number: 4 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLTNSSL*IGGIAP
Trigger: CGGTGCAATGCCACCAATCCACAGGCTACTGTTGGT...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TGTTCTTCCCACCTTACCATGCAGGACAGGGTTACTGGTCATCATGGGACAGCAACCAACAGTAGCCTGTaGATTGGTGGCATTGCACCG +
Preference number: 4 (lower is better)
Translates to: CSSHLTMQDRVTGHHGTATNSSL*IGGIAP
Trigger: CGGTGCAATGCCACCAATCCACAGGCTACTGTTGGT...TGCTGTCCCATGATGACCAGTAACCCTGTCCTGCATGGTAAGGTGGGAAGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCCCTTCAGGACAACCTaGCAACTCCCTGTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLPFRTT*QLPVLE
Trigger: TTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGG...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCTTCAGCTCAGGCAGTaGGATGACCTTATCCTTGTT +
Preference number: 4 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSLQLRQ*DDLILV
Trigger: AACAAGGATAAGGTCATCTCACTGCCTGAGCTGAAG...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGCTTCAGCTCAGGCAGTaGGATGACCTTATCCTTGTT +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLLQLRQ*DDLILV
Trigger: AACAAGGATAAGGTCATCTCACTGCCTGAGCTGAAG...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTTCCCTGAGGGAAGCTaGCAAGGCTACCACCTTCTT +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFFPEGS*QGYHLL
Trigger: AAGAAGGTGGTAGCCTTGGCAGCTTCCCTCAGGGAA...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR CCA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTGGTACTCACACATaGACTCGTAGGACCTGCCGT +
Preference number: 4 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFSGTHT*TRRTCR
Trigger: ACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGA...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATCGGCACTTGGCTCTCTaGTACTCACACATGGACTCG +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYRHLAL*YSHMDS
Trigger: CGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCG...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GCGCTGAGGGTTAGGTGTCTGACGGTCAGTCCTGTCTCCTCGGAGTTTCCATGGTCCTGGTCACAGGAATaGACTTTCTCTGAATTTCTT +
Preference number: 4 (lower is better)
Translates to: ALRVRCLTVSPVSSEFPWSWSQE*TFSEFL
Trigger: AAGAAATTCAGAGAAAGTCCATTCCTGTGACCAGGA...CCATGGAAACTCCGAGGAGACAGGACTGACCGTCAGACACCTAACCCTCAGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGGCACTCTGTCTTTCCTaGTCACAGGAATGGACTTTC +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLALCLS*SQEWTF
Trigger: GAAAGTCCATTCCTGTGACCAGGAAAGACAGAGTGC...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 72 bp ATGAGAAAAGCCAGAGGAATAAGAGCAACTCCGGGATaGGCCAACAAGGTGGCTGACCCAATCGGTGAGGAT +
Preference number: 4 (lower is better)
Translates to: MRKARGIRATPG*ANKVADPIGED
Trigger: ATCCTCACCGATTGGGTCAGCCACCTTGTTGGCCAATCCCGGAGTTGCTCTTATTCCTCTGGCTTTTCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATAGGCGACACTTGCTCTaGCCAGCATCTTTGCATCGA +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYRRHLL*PASLHR
Trigger: TCGATGCAAAGATGCTGGCCAGAGCAAGTGTCGCCT...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTCCTCCTGAGGCTTCTTaGCCTGTTCCAAGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: VIKSANMAGTTYVTQTVAPPEAS*PVPRPE
Trigger: CTCAGGCCTTGGAACAGGCCAAGAAGCCTCAGGAGG...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 72 bp GAGAGCACGAAAGTAAAACCTAGTTGGACTCTAGTGTaGGGAGCTACATGCTTGTGGAGGCTCTCTTGTGGG +
Preference number: 4 (lower is better)
Translates to: ESTKVKPSWTLV*GATCLWRLSCG
Trigger: CCCACAAGAGAGCCTCCACAAGCATGTAGCTCCCAACACTAGAGTCCAACTAGGTTTTACTTTCGTGCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGGTCGGTAACTGGACCTaGACATACAGGAGTTTTATT +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLVGNWT*TYRSFI
Trigger: AATAAAACTCCTGTATGTTCAGGTCCAGTTACCGAC...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCAGTCGGTAACTGGACCTaGACATACAGGAGTTTTATT +
Preference number: 4 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPVGNWT*TYRSFI
Trigger: AATAAAACTCCTGTATGTTCAGGTCCAGTTACCGAC...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGAGCTGAGTTAATGGCCTaGACCATGTCTGTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: VRDATSIQQFWKSMRKARAELMA*TMSVVR
Trigger: CCTCACCACAGACATGGTTCAGGCCATTAACTCAGC...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATTCTTTACATAGCGCTTaGACGGCTTCATCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYSLHSA*TASSPA
Trigger: AGCGGGAGATGAAGCCGTTCAAGCGCTATGTAAAGA...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACAGGAGTTTTATTCTaGACGGAAGAACCACTGATG +
Preference number: 4 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQTGVLF*TEEPLM
Trigger: CATCAGTGGTTCTTCCGTGCAGAATAAAACTCCTGT...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp AAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACACAGGAGTTTTATTCTaGACGGAAGAACCACTGATG +
Preference number: 4 (lower is better)
Translates to: KGWFRSSVLFTISSDAQHTGVLF*TEEPLM
Trigger: CATCAGTGGTTCTTCCGTGCAGAATAAAACTCCTGT...GTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp AGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGCTTCCTGAATTACCCTaGCTCAAGGGCTTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: RKHAIHSTSTGLPSILSELPELP*LKGLSV
Trigger: TACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAG...CTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
3UTR CAA 72 bp ACACAGCACAGCCTACGCCCATCTGTGAGAGAGAAGTaGGCTGGTCAGATTCTAAACTCCTACATAAAGGTG +
Preference number: 4 (lower is better)
Translates to: TQHSLRPSVREK*AGQILNSYIKV
Trigger: CACCTTTATGTAGGAGTTTAGAATCTGACCAGCCAACTTCTCTCTCACAGATGGGCGTAGGCTGTGCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp TTTCCTCACATGCTTGGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTATCTTTGATTACCAAGTaGTTAATCCATAAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: FPHMLGVSPLMSYTGDMLSLITK*LIHKVG
Trigger: CCCCACCTTATGGATTAAGCACTTGGTAATCAAAGA...TAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATGCACTCTGTCTTTCCTaGTCACAGGAATGGACTTTC +
Preference number: 4 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYALCLS*SQEWTF
Trigger: GAAAGTCCATTCCTGTGACCAGGAAAGACAGAGTGC...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGAATAAGGTGGGGGCTGTaGTTTCATCTCCATCGAACA +
Preference number: 4 (lower is better)
Translates to: VRDATSIQQFWKSMRKARIRWGL*FHLHRT
Trigger: TGTTCGATGGAGATGAAATCACAGCCCCCACCTTAT...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGAGCCATCATCTGAATTaGGGGTTAAAAAGAAACGAA +
Preference number: 4 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLSHHLN*GLKRNE
Trigger: TTCGTTTCTTTTTAACCCTCAATTCAGATGATGGCT...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110347.9
CDS-3UTR CCA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTTACCCTGTGTACGTATaGCACTGCACCTGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: VIKSANMAGTTYVTQTVAYPVYV*HCTCVK
Trigger: CTTCACACAGGTGCAGTGCCATACGTACACAGGGTA...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGAATCATCTTTTCTTCCTaGATTACCCTGGCTCAAGGG +
Preference number: 4 (lower is better)
Translates to: VRDATSIQQFWKSMRKARIIFSS*ITLAQG
Trigger: CCCTTGAGCCAGGGTAATTCAGGAAGAAAAGATGAT...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTATAAGGTGGGGGCTGTaGTTTCATCTCCATCGAACA +
Preference number: 4 (lower is better)
Translates to: VIKSANMAGTTYVTQTVAIRWGL*FHLHRT
Trigger: TGTTCGATGGAGATGAAATCACAGCCCCCACCTTAT...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR TCA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTCTTCAGCTCAGGCAGTaGGATGACCTTATCCTTGTT +
Preference number: 4 (lower is better)
Translates to: VIKSANMAGTTYVTQTVALQLRQ*DDLILV
Trigger: AACAAGGATAAGGTCATCTCACTGCCTGAGCTGAAG...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR GCA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGATCTTTGATTACCAAGTaGTTAATCCATAAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: VRDATSIQQFWKSMRKARSLITK*LIHKVG
Trigger: CCCCACCTTATGGATTAAGCACTTGGTAATCAAAGA...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CCA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTTCCTGGTCACAGGAATaGACTTTCTCTGAATTTCTT +
Preference number: 4 (lower is better)
Translates to: VIKSANMAGTTYVTQTVASWSQE*TFSEFL
Trigger: AAGAAATTCAGAGAAAGTCCATTCCTGTGACCAGGA...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp GGAGGGTCACGGTCACTTATTAGGAACCTGGGGCCGGTGGTGCGGTaGCCGCCGGCCGGGGACAGCTGCACCAACACGAGCAGCAAGTGG +
Preference number: 5 (lower is better)
Translates to: GGSRSLIRNLGPVVR*PPAGDSCTNTSSKW
Trigger: CCACTTGCTGCTCGTGTTGGTGCAGCTGTCCCCGGCCGGCGGCCACCGCACCACCGGCCCCAGGTTCCTAATAAGTGACCGTGACCCTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp CGGCCAGGGCTGGGTCTCGGCACTTGGCTCTCTGGTACTCACACATaGACTCGTAGGACCTGCCGTCAGAGGCGCAGATGGGCTTGGGCT +
Preference number: 5 (lower is better)
Translates to: RPGLGLGTWLSGTHT*TRRTCRQRRRWAWA
Trigger: AGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGCCCTGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 90 bp CAGAGGCGCAGATGGGCTTGGGCTGAGTCCTGGGACAGTGTGGGTTaGACGGAGGGTCACGGTCACTTATTAGGAACCTGGGGCCGGTGG +
Preference number: 5 (lower is better)
Translates to: QRRRWAWAESWDSVG*TEGHGHLLGTWGRW
Trigger: CCACCGGCCCCAGGTTCCTAATAAGTGACCGTGACCCTCCGTGCAACCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 90 bp GCACCGGCTTATAGAGCCCACCAGGAGCACACTCGGGGATCACAATaGCCTCTCGGGGATTCTGCCGCGCCTCTTCCAGGGCACTCTGTC +
Preference number: 5 (lower is better)
Translates to: APAYRAHQEHTRGSQ*PLGDSAAPLPGHSV
Trigger: GACAGAGTGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGGCATTGTGATCCCCGAGTGTGCTCCTGGTGGGCTCTATAAGCCGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp GGTACTCACACATGGACTCGTAGGACCTGCCGTCAGAGGCGCAGATaGGCTTGGGCTGAGTCCTGGGACAGTGTGGGTTGCACGGAGGGT +
Preference number: 5 (lower is better)
Translates to: GTHTWTRRTCRQRRR*AWAESWDSVGCTEG
Trigger: ACCCTCCGTGCAACCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp TGCATCGACCTCGATGGACCACGGCCAGGGCTGGGTCTCGGCACTTaGCTCTCTGGTACTCACACATGGACTCGTAGGACCTGCCGTCAG +
Preference number: 5 (lower is better)
Translates to: CIDLDGPRPGLGLGT*LSGTHTWTRRTCRQ
Trigger: CTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 90 bp CTCGGCACTTGGCTCTCTGGTACTCACACATGGACTCGTAGGACCTaGCGTCAGAGGCGCAGATGGGCTTGGGCTGAGTCCTGGGACAGT +
Preference number: 5 (lower is better)
Translates to: LGTWLSGTHTWTRRT*RQRRRWAWAESWDS
Trigger: ACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 90 bp GCTTCTTGGCCTGTTCCAAGGCCTGAGCCCTCTCCAGGCGACACTTaGTCTGGCCAGCATCTTTGCATCGACCTCGATGGACCACGGCCA +
Preference number: 5 (lower is better)
Translates to: ASWPVPRPEPSPGDT*SGQHLCIDLDGPRP
Trigger: TGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAGAGCAAGTGTCGCCTGGAGAGGGCTCAGGCCTTGGAACAGGCCAAGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp CGTAGGACCTGCCGTCAGAGGCGCAGATGGGCTTGGGCTGAGTCCTaGGACAGTGTGGGTTGCACGGAGGGTCACGGTCACTTATTAGGA +
Preference number: 5 (lower is better)
Translates to: RRTCRQRRRWAWAES*DSVGCTEGHGHLLG
Trigger: TCCTAATAAGTGACCGTGACCCTCCGTGCAACCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp CTGGCCAGCATCTTTGCATCGACCTCGATGGACCACGGCCAGGGCTaGGTCTCGGCACTTGGCTCTCTGGTACTCACACATGGACTCGTA +
Preference number: 5 (lower is better)
Translates to: LASIFASTSMDHGQG*VSALGSLVLTHGLV
Trigger: TACGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp TCTTGGCTCTGGCGTCACTCTCGCAACTTGGCATCACATAGCGTGTaGAAGTCCCCGGCAATGGGCGCCCTGTGTCTACTAGGACGCACC +
Preference number: 5 (lower is better)
Translates to: SWLWRHSRNLASHSV*KSPAMGALCLLGRT
Trigger: GGTGCGTCCTAGTAGACACAGGGCGCCCATTGCCGGGGACTTCCACACGCTATGTGATGCCAAGTTGCGAGAGTGACGCCAGAGCCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp GTCATCGGCCTCTATGCTCTTGGCTCTGGCGTCACTCTCGCAACTTaGCATCACATAGCGTGTGGAAGTCCCCGGCAATGGGCGCCCTGT +
Preference number: 5 (lower is better)
Translates to: VIGLYALGSGVTLAT*HHIACGSPRQWAPC
Trigger: ACAGGGCGCCCATTGCCGGGGACTTCCACACGCTATGTGATGCCAAGTTGCGAGAGTGACGCCAGAGCCAAGAGCATAGAGGCCGATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGTGTGGATTGGTGGCATaGCACCGGCTTATAGAGCCC +
Preference number: 5 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVCGLVA*HRLIEP
Trigger: GGGCTCTATAAGCCGGTGCAATGCCACCAATCCACA...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAACAGTAGCCTGTGGATaGGTGGCATTGCACCGGCTT +
Preference number: 5 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPTVACG*VALHRL
Trigger: AAGCCGGTGCAATGCCACCAATCCACAGGCTACTGT...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACCTGGGACAGTGTGGGTaGCACGGAGGGTCACGGTCA +
Preference number: 5 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDLGQCG*HGGSRS
Trigger: TGACCGTGACCCTCCGTGCAACCCACACTGTCCCAG...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGATGTCATCGCTGCTGTaGCTATCCAGCTGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVMSSLL*LSSWLK
Trigger: CTTCAGCCAGCTGGATAGCAACAGCAGCGATGACAT...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAATGTCATCGCTGCTGTaGCTATCCAGCTGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPMSSLL*LSSWLK
Trigger: CTTCAGCCAGCTGGATAGCAACAGCAGCGATGACAT...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCAGGCTTCATCTCCCGCTaGTTAATGTCATCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPGFISR*LMSSLL
Trigger: CAGCAGCGATGACATTAACAAGCGGGAGATGAAGCC...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp CGTATGGCACTGCACCTGTGTGAAGGAACCATCCTCGCCACACTCTaGGACAAACACAGCCTCCTGAGGCTTCTTGGCCTGTTCCAAGGC +
Preference number: 5 (lower is better)
Translates to: RMALHLCEGTILATL*DKHSLLRLLGLFQG
Trigger: GCCTTGGAACAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGTCCCAGAGTGTGGCGAGGATGGTTCCTTCACACAGGTGCAGTGCCATACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCTGGGACAGTGTGGGTaGCACGGAGGGTCACGGTCA +
Preference number: 5 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSLGQCG*HGGSRS
Trigger: TGACCGTGACCCTCCGTGCAACCCACACTGTCCCAG...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACCCCTGGCTCAAGGGCTaGTCGGTAACTGGACCTGAA +
Preference number: 5 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHPWLKG*SVTGPE
Trigger: TTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGG...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCGCTGAGGGTTAGGTGTCTGACGGTCAGTCCTGTCTCCTCGGAGTTTCCATGGACAGTAGCCTGTGGATaGGTGGCATTGCACCGGCTT +
Preference number: 5 (lower is better)
Translates to: ALRVRCLTVSPVSSEFPWTVACG*VALHRL
Trigger: AAGCCGGTGCAATGCCACCAATCCACAGGCTACTGT...CCATGGAAACTCCGAGGAGACAGGACTGACCGTCAGACACCTAACCCTCAGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACAGGCTACCACCTTCTTaGCTAACACCCAGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHRLPPS*LTPRQP
Trigger: GGGCTGCCTGGGTGTTAGCAAAGAAGGTGGTAGCCT...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR CAA 90 bp TTTCCTCACATGCTTGGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTAGCTGGGTCTCGGCACTaGGCTCTCTGGTACTCACAC +
Preference number: 5 (lower is better)
Translates to: FPHMLGVSPLMSYTGDMLAGSRH*ALWYSH
Trigger: GTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGC...TAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCAAGGCGTCCGACTTCTTaGCTAACACCCAGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: ALLWVCRRAGSGLQSSSPRRPTS*LTPRQP
Trigger: GGGCTGCCTGGGTGTTAGCAAAGAAGTCGGACGCCT...TGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCCTCTCCAGGCGACACTaGCTCTGGCCAGCATCTTTG +
Preference number: 5 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGLSRRH*LWPASL
Trigger: CAAAGATGCTGGCCAGAGCAAGTGTCGCCTGGAGAG...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp TTCAGGTCTTCAGTCCTCTTCACCATCTCCTCAGATGCCCAACACCTGCTGCTGCTCTCCAGGCGACACTaGCTCTGGCCAGCATCTTTG +
Preference number: 5 (lower is better)
Translates to: FRSSVLFTISSDAQHLLLLSRRH*LWPASL
Trigger: CAAAGATGCTGGCCAGAGCAAGTGTCGCCTGGAGAG...CAGCAGCAGGTGTTGGGCATCTGAGGAGATGGTGAAGAGGACTGAAGACCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp TGCTTGTGGAGGCTCTCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCCTGGCTCAAGGGCTaGTCGGTAACTGGACCTGAA +
Preference number: 5 (lower is better)
Translates to: CLWRLSCGFAEGLVQVFSPWLKG*SVTGPE
Trigger: TTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGG...ACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGAGAGCCTCCACAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCTCCATCGAACACAGGTaGGGTCTCCATCGTGGGCGT +
Preference number: 5 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGSIEHR*GLHRGR
Trigger: ACGCCCACGATGGAGACCCAACCTGTGTTCGATGGA...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GAGAAGGCTATGTTCCCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGTCCATCGAACACAGGTaGGGTCTCCATCGTGGGCGT +
Preference number: 5 (lower is better)
Translates to: EKAMFPTCGQHYVVHAFQSIEHR*GLHRGR
Trigger: ACGCCCACGATGGAGACCCAACCTGTGTTCGATGGA...CTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGGGAACATAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp AGGAGAACCCTGCTGGTGCTGGGTGTCCTTTTCCTCACATGCTTGGGGTCTCACGGCTTCATCTCCCGCTaGTTAATGTCATCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RRTLLVLGVLFLTCLGSHGFISR*LMSSLL
Trigger: CAGCAGCGATGACATTAACAAGCGGGAGATGAAGCC...GTGAGACCCCAAGCATGTGAGGAAAAGGACACCCAGCACCAGCAGGGTTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp CCCACATGTGGGCAGCATTATGTGGTCCATGCCTTCCAGACCCAAAATAGAGCAGAACCACTGATGGGCTaGCCATCTGGGGTGACACAC +
Preference number: 5 (lower is better)
Translates to: PTCGQHYVVHAFQTQNRAEPLMG*PSGVTH
Trigger: GTGTGTCACCCCAGATGGCAAGCCCATCAGTGGTTC...TGCTCTATTTTGGGTCTGGAAGGCATGGACCACATAATGCTGCCCACATGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp TCTTGTGGGTTTGCAGAAGGGCTGGTTCAGGTCTTCAGTCCTCTTCACCATCTCGAACCACTGATGGGCTaGCCATCTGGGGTGACACAC +
Preference number: 5 (lower is better)
Translates to: SCGFAEGLVQVFSPLHHLEPLMG*PSGVTH
Trigger: GTGTGTCACCCCAGATGGCAAGCCCATCAGTGGTTC...GAGATGGTGAAGAGGACTGAAGACCTGAACCAGCCCTTCTGCAAACCCACAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp TTTCCTCACATGCTTGGGGTCTCACCTCTCATGTCCTACACGGGGGACATGCTATGTGGATTGGTGGCATaGCACCGGCTTATAGAGCCC +
Preference number: 5 (lower is better)
Translates to: FPHMLGVSPLMSYTGDMLCGLVA*HRLIEP
Trigger: GGGCTCTATAAGCCGGTGCAATGCCACCAATCCACA...TAGCATGTCCCCCGTGTAGGACATGAGAGGTGAGACCCCAAGCATGTGAGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCACAGTAGCCTGTGGATaGGTGGCATTGCACCGGCTT +
Preference number: 5 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGTVACG*VALHRL
Trigger: AAGCCGGTGCAATGCCACCAATCCACAGGCTACTGT...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS TCA 90 bp ATTCCATCTTCTTCCCTTCAGGACAACCTGGCAACTCCCTGTCCTTaGAAGGGTCATCGGCCTCTATGCTCTTGGCTCTGGCGTCACTCT +
Preference number: 5 (lower is better)
Translates to: IPSSSLQDNLATPCP*KGHRPLCSWLWRHS
Trigger: AGAGTGACGCCAGAGCCAAGAGCATAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGGAAGAAGATGGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGACTGGGACAGTGTGGGTaGCACGGAGGGTCACGGTCA +
Preference number: 5 (lower is better)
Translates to: VRDATSIQQFWKSMRKARLGQCG*HGGSRS
Trigger: TGACCGTGACCCTCCGTGCAACCCACACTGTCCCAG...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCTGAGACTTCATCGAATCAAGCTCCGAGAAGGCTATGTTCCCCACATGTGGGCGGCTTCATCTCCCGCTaGTTAATGTCATCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: AETSSNQAPRRLCSPHVGGFISR*LMSSLL
Trigger: CAGCAGCGATGACATTAACAAGCGGGAGATGAAGCC...GCCCACATGTGGGGAACATAGCCTTCTCGGAGCTTGATTCGATGAAGTCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCAGGCTACCACCTTCTTaGCTAACACCCAGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFRLPPS*LTPRQP
Trigger: GGGCTGCCTGGGTGTTAGCAAAGAAGGTGGTAGCCT...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS-3UTR CAA 90 bp ATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCTCTCAGAGTCCATATCTCTCCAGGCGACACTaGCTCTGGCCAGCATCTTTG +
Preference number: 5 (lower is better)
Translates to: MLSTAQAQGSHLFSQSPYLSRRH*LWPASL
Trigger: CAAAGATGCTGGCCAGAGCAAGTGTCGCCTGGAGAG...ATATGGACTCTGAGAGAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp CTCCTCAGATGCCCAACACCTGCTGCTGCAGGAGAACCCTGCTGGTGCTGGGTGTCTGAATTTCTTACGTaGGTGTTATTCAACTTGGAG +
Preference number: 5 (lower is better)
Translates to: LLRCPTPAAAGEPCWCWVSEFLT*VLFNLE
Trigger: CTCCAAGTTGAATAACACCAACGTAAGAAATTCAGA...CACCCAGCACCAGCAGGGTTCTCCTGCAGCAGCAGGTGTTGGGCATCTGAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GGAGGGCCATCCAGCTCCAGCCTGCTGCGTGCGGTGTTTCTGTTCAAGGCTCCATCTGAATTTCTTACGTaGGTGTTATTCAACTTGGAG +
Preference number: 5 (lower is better)
Translates to: GGPSSSSLLRAVFLFKAPSEFLT*VLFNLE
Trigger: CTCCAAGTTGAATAACACCAACGTAAGAAATTCAGA...TGGAGCCTTGAACAGAAACACCGCACGCAGCAGGCTGGAGCTGGATGGCCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 90 bp AAGGGCTTGTCGGTAACTGGACCTGAACATACAGGAGTTTTATTCTaGACGGAAGAACCACTGATGGGCTTGCCATCTGGGGTGACACAC +
Preference number: 5 (lower is better)
Translates to: KGLSVTGPEHTGVLF*TEEPLMGLPSGVTH
Trigger: GTGTGTCACCCCAGATGGCAAGCCCATCAGTGGTTCTTCCGTGCAGAATAAAACTCCTGTATGTTCAGGTCCAGTTACCGACAAGCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp TCTCGGGGATTCTGCCGCGCCTCTTCCAGGGCACTCTGTCTTTCCTaGTCACAGGAATGGACTTTCTCTGAATTTCTTACGTTGGTGTTA +
Preference number: 5 (lower is better)
Translates to: SRGFCRASSRALCLS*SQEWTFSEFLTLVL
Trigger: TAACACCAACGTAAGAAATTCAGAGAAAGTCCATTCCTGTGACCAGGAAAGACAGAGTGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp ATCCATAAGGTGGGGGCTGTGATTTCATCTCCATCGAACACAGGTTaGGTCTCCATCGTGGGCGTGGGTTTAGAGCCATCATCTGAATTG +
Preference number: 5 (lower is better)
Translates to: IHKVGAVISSPSNTG*VSIVGVGLEPSSEL
Trigger: CAATTCAGATGATGGCTCTAAACCCACGCCCACGATGGAGACCCAACCTGTGTTCGATGGAGATGAAATCACAGCCCCCACCTTATGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110347.9
CDS-3UTR CAA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTGCTGGGTCTCGGCACTaGGCTCTCTGGTACTCACAC +
Preference number: 5 (lower is better)
Translates to: VIKSANMAGTTYVTQTVAAGSRH*ALWYSH
Trigger: GTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGC...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 90 bp GTGGGCGTGGGTTTAGAGCCATCATCTTTTCTTCCTGAATTACCCTaGCTCAAGGGCTTGTCGGTAACTGGACCTGAACATACAGGAGTT +
Preference number: 5 (lower is better)
Translates to: VGVGLEPSSFLPELP*LKGLSVTGPEHTGV
Trigger: AACTCCTGTATGTTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGATGATGGCTCTAAACCCACGCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000129362.2
CDS CCA 90 bp ATCCATAAGGTGGGGGCTGTGATTTCATCTCCATCGAACACAGGTTaGGTCTCCATCGTGGGCGTGGGTTTAGAGCCATCATCTTTTCTT +
Preference number: 5 (lower is better)
Translates to: IHKVGAVISSPSNTG*VSIVGVGLEPSSFL
Trigger: AAGAAAAGATGATGGCTCTAAACCCACGCCCACGATGGAGACCCAACCTGTGTTCGATGGAGATGAAATCACAGCCCCCACCTTATGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTGAACCACTGATGGGCTaGCCATCTGGGGTGACACAC +
Preference number: 5 (lower is better)
Translates to: VIKSANMAGTTYVTQTVAEPLMG*PSGVTH
Trigger: GTGTGTCACCCCAGATGGCAAGCCCATCAGTGGTTC...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTCCCTGGCTCAAGGGCTaGTCGGTAACTGGACCTGAA +
Preference number: 5 (lower is better)
Translates to: VIKSANMAGTTYVTQTVAPWLKG*SVTGPE
Trigger: TTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGG...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GTTATTAAAAGTGCAAACATGGCGGGCACCACTTATGTTACACAGACTGTGGCTTCCATCGAACACAGGTaGGGTCTCCATCGTGGGCGT +
Preference number: 5 (lower is better)
Translates to: VIKSANMAGTTYVTQTVASIEHR*GLHRGR
Trigger: ACGCCCACGATGGAGACCCAACCTGTGTTCGATGGA...AGCCACAGTCTGTGTAACATAAGTGGTGCCCGCCATGTTTGCACTTTTAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GTAAGGGACGCCACGTCAATTCAACAATTCTGGAAGTCCATGAGAAAAGCCAGATGTGGATTGGTGGCATaGCACCGGCTTATAGAGCCC +
Preference number: 5 (lower is better)
Translates to: VRDATSIQQFWKSMRKARCGLVA*HRLIEP
Trigger: GGGCTCTATAAGCCGGTGCAATGCCACCAATCCACA...TCTGGCTTTTCTCATGGACTTCCAGAATTGTTGAATTGACGTGGCGTCCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp GCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACTTCCACCAGGACTCTGAATTTCTTACGTaGGTGTTATTCAACTTGGAG +
Preference number: 5 (lower is better)
Translates to: AGQGYWSSWDSMCDFHQDSEFLT*VLFNLE
Trigger: CTCCAAGTTGAATAACACCAACGTAAGAAATTCAGA...GTCCTGGTGGAAGTCACACATGCTGTCCCATGATGACCAGTAACCCTGTCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS-3UTR CAA 90 bp CCACCAGAAGAAAACATGCTATCCACAGCACAAGCACAGGGCTCCCATCTATTCGAGCCATCATCTGAATaGAGGGTTAAAAAGAAACGA +
Preference number: 5 (lower is better)
Translates to: PPEENMLSTAQAQGSHLFEPSSE*RVKKKR
Trigger: TCGTTTCTTTTTAACCCTCAATTCAGATGATGGCTC...GAATAGATGGGAGCCCTGTGCTTGTGCTGTGGATAGCATGTTTTCTTCTGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110347.9
CDS GCA 90 bp TTTCTTACGTTGGTGTTATTCAACTTGGAGTCTTTGATTACCAAGTaGTTAATCCATAAGGTGGGGGCTGTGATTTCATCTCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: FLTLVLFNLESLITK*LIHKVGAVISSPSN
Trigger: GTTCGATGGAGATGAAATCACAGCCCCCACCTTATGGATTAAGCACTTGGTAATCAAAGACTCCAAGTTGAATAACACCAACGTAAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp CGGTCACTTATTAGGAACCTGGGGCCGGTGGTGCGGTaGCCGCCGGCCGGGGACAGCTGCACCAACACGAGC +
Preference number: 6 (lower is better)
Translates to: RSLIRNLGPVVR*PPAGDSCTNTS
Trigger: GCTCGTGTTGGTGCAGCTGTCCCCGGCCGGCGGCCACCGCACCACCGGCCCCAGGTTCCTAATAAGTGACCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp TGCCGTCAGAGGCGCAGATGGGCTTGGGCTGAGTCCTaGGACAGTGTGGGTTGCACGGAGGGTCACGGTCAC +
Preference number: 6 (lower is better)
Translates to: CRQRRRWAWAES*DSVGCTEGHGH
Trigger: GTGACCGTGACCCTCCGTGCAACCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 72 bp GCCCTCTCCAGGCGACACTTGCTCTGGCCAGCATCTTaGCATCGACCTCGATGGACCACGGCCAGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: ALSRRHLLWPAS*HRPRWTTARAG
Trigger: CCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAGAGCAAGTGTCGCCTGGAGAGGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 72 bp CCCTCTCCAGGCGACACTTGCTCTGGCCAGCATCTTTaGATCGACCTCGATGGACCACGGCCAGGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: PSPGDTCSGQHL*IDLDGPRPGLG
Trigger: ACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAGAGCAAGTGTCGCCTGGAGAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 72 bp GCACACTCGGGGATCACAATGCCCTCTCGGGGATTCTaGCGCGCCTCTTCCAGGGCACTCTGTCTTTCCTGG +
Preference number: 6 (lower is better)
Translates to: AHSGITMPSRGF*RASSRALCLSW
Trigger: CCAGGAAAGACAGAGTGCCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGGCATTGTGATCCCCGAGTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 72 bp TATAGAGCCCACCAGGAGCACACTCGGGGATCACAATaGCCTCTCGGGGATTCTGCCGCGCCTCTTCCAGGG +
Preference number: 6 (lower is better)
Translates to: YRAHQEHTRGSQ*PLGDSAAPLPG
Trigger: CCCTGGAAGAGGCGCGGCAGAATCCCCGAGAGGGCATTGTGATCCCCGAGTGTGCTCCTGGTGGGCTCTATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp ACATGGACTCGTAGGACCTGCCGTCAGAGGCGCAGATaGGCTTGGGCTGAGTCCTGGGACAGTGTGGGTTGC +
Preference number: 6 (lower is better)
Translates to: TWTRRTCRQRRR*AWAESWDSVGC
Trigger: GCAACCCACACTGTCCCAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp CTCGATGGACCACGGCCAGGGCTGGGTCTCGGCACTTaGCTCTCTGGTACTCACACATGGACTCGTAGGACC +
Preference number: 6 (lower is better)
Translates to: LDGPRPGLGLGT*LSGTHTWTRRT
Trigger: GGTCCTACGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp CACTTGCTCTGGCCAGCATCTTTGCATCGACCTCGATaGACCACGGCCAGGGCTGGGTCTCGGCACTTGGCT +
Preference number: 6 (lower is better)
Translates to: HLLWPASLHRPR*TTARAGSRHLA
Trigger: AGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAGAGCAAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 72 bp TGGCTCTCTGGTACTCACACATGGACTCGTAGGACCTaGCGTCAGAGGCGCAGATGGGCTTGGGCTGAGTCC +
Preference number: 6 (lower is better)
Translates to: WLSGTHTWTRRT*RQRRRWAWAES
Trigger: GGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp CTGGGTCTCGGCACTTGGCTCTCTGGTACTCACACATaGACTCGTAGGACCTGCCGTCAGAGGCGCAGATGG +
Preference number: 6 (lower is better)
Translates to: LGLGTWLSGTHT*TRRTCRQRRRW
Trigger: CCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp ATCTTTGCATCGACCTCGATGGACCACGGCCAGGGCTaGGTCTCGGCACTTGGCTCTCTGGTACTCACACAT +
Preference number: 6 (lower is better)
Translates to: IFASTSMDHGQG*VSALGSLVLTH
Trigger: ATGTGTGAGTACCAGAGAGCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp CTGCACCTGTGTGAAGGAACCATCCTCGCCACACTCTaGGACAAACACAGCCTCCTGAGGCTTCTTGGCCTG +
Preference number: 6 (lower is better)
Translates to: LHLCEGTILATL*DKHSLLRLLGL
Trigger: CAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGTCCCAGAGTGTGGCGAGGATGGTTCCTTCACACAGGTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp TGGCGTCACTCTCGCAACTTGGCATCACATAGCGTGTaGAAGTCCCCGGCAATGGGCGCCCTGTGTCTACTA +
Preference number: 6 (lower is better)
Translates to: WRHSRNLASHSV*KSPAMGALCLL
Trigger: TAGTAGACACAGGGCGCCCATTGCCGGGGACTTCCACACGCTATGTGATGCCAAGTTGCGAGAGTGACGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 72 bp GGTGGGGGCTGTGATTTCATCTCCATCGAACACAGGTaGGGTCTCCATCGTGGGCGTGGGTTTAGAGCCATC +
Preference number: 6 (lower is better)
Translates to: GGGCDFISIEHR*GLHRGRGFRAI
Trigger: GATGGCTCTAAACCCACGCCCACGATGGAGACCCAACCTGTGTTCGATGGAGATGAAATCACAGCCCCCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS TCA 72 bp TCTTCCCTTCAGGACAACCTGGCAACTCCCTGTCCTTaGAAGGGTCATCGGCCTCTATGCTCTTGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: SSLQDNLATPCP*KGHRPLCSWLW
Trigger: CCAGAGCCAAGAGCATAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS TCA 72 bp CGTCCGATGAACGGGTTTGTGCCTGCTCGTTTTCCCTaGGGGAAGCTGCCAAGGCTACCACCTTCTTTGCTA +
Preference number: 6 (lower is better)
Translates to: RPMNGFVPARFP*GKLPRLPPSLL
Trigger: TAGCAAAGAAGGTGGTAGCCTTGGCAGCTTCCCTCAGGGAAAACGAGCAGGCACAAACCCGTTCATCGGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
CDS CCA 72 bp GTGGGGGCTGTGATTTCATCTCCATCGAACACAGGTTaGGTCTCCATCGTGGGCGTGGGTTTAGAGCCATCA +
Preference number: 6 (lower is better)
Translates to: VGAVISSPSNTG*VSIVGVGLEPS
Trigger: TGATGGCTCTAAACCCACGCCCACGATGGAGACCCAACCTGTGTTCGATGGAGATGAAATCACAGCCCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 72 bp TCCCTGTCCTTGAAAGGGTCATCGGCCTCTATGCTCTaGGCTCTGGCGTCACTCTCGCAACTTGGCATCACA +
Preference number: 6 (lower is better)
Translates to: SLSLKGSSASML*ALASLSQLGIT
Trigger: TGTGATGCCAAGTTGCGAGAGTGACGCCAGAGCCAAGAGCATAGAGGCCGATGACCCTTTCAAGGACAGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 90 bp AATTCCATCTTCTTCCCTTCAGGACAACCTGGCAACTCCCTGTCCTaGAAAGGGTCATCGGCCTCTATGCTCTTGGCTCTGGCGTCACTC +
Preference number: 6 (lower is better)
Translates to: NSIFFPSGQPGNSLS*KGSSASMLLALASL
Trigger: GAGTGACGCCAGAGCCAAGAGCATAGAGGCCGATGACCCTTTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGGAAGAAGATGGAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 72 bp GGCTTCATCTCCCGCTTGTTAATGTCATCGCTGCTGTaGCTATCCAGCTGGCTGAAGTACCAGTGTGCCACT +
Preference number: 6 (lower is better)
Translates to: GFISRLLMSSLL*LSSWLKYQCAT
Trigger: AGTGGCACACTGGTACTTCAGCCAGCTGGATAGCAACAGCAGCGATGACATTAACAAGCGGGAGATGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS GCA 72 bp TCGGTAACTGGACCTGAACATACAGGAGTTTTATTCTaGACGGAAGAACCACTGATGGGCTTGCCATCTGGG +
Preference number: 6 (lower is better)
Translates to: SVTGPEHTGVLF*TEEPLMGLPSG
Trigger: CCCAGATGGCAAGCCCATCAGTGGTTCTTCCGTGCAGAATAAAACTCCTGTATGTTCAGGTCCAGTTACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CCA 72 bp GGTTTAGAGCCATCATCTTTTCTTCCTGAATTACCCTaGCTCAAGGGCTTGTCGGTAACTGGACCTGAACAT +
Preference number: 6 (lower is better)
Translates to: GLEPSSFLPELP*LKGLSVTGPEH
Trigger: ATGTTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGATGATGGCTCTAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000129362.2
CDS CCA 72 bp AAGAAACGAAAGGAGACTTTTCTTCCTGAATTACCCTaGCTCAAGGGCTTGTCGGTAACTGGACCTGAACAT +
Preference number: 6 (lower is better)
Translates to: KKRKETFLPELP*LKGLSVTGPEH
Trigger: ATGTTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGTCTCCTTTCGTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110347.9
CDS CAA 72 bp GAGACTTTTCTTCCTGAATTACCCTGGCTCAAGGGCTaGTCGGTAACTGGACCTGAACATACAGGAGTTTTA +
Preference number: 6 (lower is better)
Translates to: ETFLPELPWLKG*SVTGPEHTGVL
Trigger: TAAAACTCCTGTATGTTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110347.9
CDS CAA 90 bp GGTTGGGTCTCCATCGTGGGCGTGGGTTTAGAGCCATCATCTGAATaGAGGGTTAAAAAGAAACGAAAGGAGACTTTTCTTCCTGAATTA +
Preference number: 6 (lower is better)
Translates to: GWVSIVGVGLEPSSE*RVKKKRKETFLPEL
Trigger: TAATTCAGGAAGAAAAGTCTCCTTTCGTTTCTTTTTAACCCTCAATTCAGATGATGGCTCTAAACCCACGCCCACGATGGAGACCCAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110347.9
CDS CAA 72 bp TCATCTTTTCTTCCTGAATTACCCTGGCTCAAGGGCTaGTCGGTAACTGGACCTGAACATACAGGAGTTTTA +
Preference number: 6 (lower is better)
Translates to: SSFLPELPWLKG*SVTGPEHTGVL
Trigger: TAAAACTCCTGTATGTTCAGGTCCAGTTACCGACAAGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021564.11
ENSMUST00000129362.2
CDS TCA 72 bp ACTCTGTCTTTCCTGGTCACAGGAATGGACTTTCTCTaGATTTCTTACGTTGGTGTTATTCAACTTGGAGTC +
Preference number: 6 (lower is better)
Translates to: TLSFLVTGMDFL*ISYVGVIQLGV
Trigger: GACTCCAAGTTGAATAACACCAACGTAAGAAATTCAGAGAAAGTCCATTCCTGTGACCAGGAAAGACAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 90 bp CAGGAATGGACTTTCTCTGAATTTCTTACGTTGGTGTTATTCAACTaGGAGTCTTTGATTACCAAGTGCTTAATCCATAAGGTGGGGGCT +
Preference number: 6 (lower is better)
Translates to: QEWTFSEFLTLVLFN*ESLITKCLIHKVGA
Trigger: AGCCCCCACCTTATGGATTAAGCACTTGGTAATCAAAGACTCCAAGTTGAATAACACCAACGTAAGAAATTCAGAGAAAGTCCATTCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 90 bp ACTTTCTCTGAATTTCTTACGTTGGTGTTATTCAACTTGGAGTCTTaGATTACCAAGTGCTTAATCCATAAGGTGGGGGCTGTGATTTCA +
Preference number: 6 (lower is better)
Translates to: TFSEFLTLVLFNLES*ITKCLIHKVGAVIS
Trigger: TGAAATCACAGCCCCCACCTTATGGATTAAGCACTTGGTAATCAAAGACTCCAAGTTGAATAACACCAACGTAAGAAATTCAGAGAAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2
CDS CAA 72 bp TGGTCACAGGAATGGACTTTCTCTGAATTTCTTACGTaGGTGTTATTCAACTTGGAGTCTTTGATTACCAAG +
Preference number: 6 (lower is better)
Translates to: WSQEWTFSEFLT*VLFNLESLITK
Trigger: CTTGGTAATCAAAGACTCCAAGTTGAATAACACCAACGTAAGAAATTCAGAGAAAGTCCATTCCTGTGACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021564.11
ENSMUST00000110347.9
ENSMUST00000129362.2