Pregenerated sensors for SMN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021645Ensembl transcript IDs: ENSMUST00000022147.15, ENSMUST00000143937.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCAGTCACGACTGGGTAGACTGCCTTCCGACACGCACACTCCACTaGTCGGTCCCTCCAACTGCTCACGCCCCAGGCACGCTCTGCTGC | + |
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Preference number: 1 (lower is better) Translates to: LSHDWVDCLPTRTLH*SVPPTAHAPGTLCC Trigger: GCAGCAGAGCGTGCCTGGGGCGTGAGCAGTTGGAGGGACCGACCAGTGGAGTGTGCGTGTCGGAAGGCAGTCTACCCAGTCGTGACTGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| 3UTR TCA 90 bp | TGGTCGGTCCCTCCAACTGCTCACGCCCCAGGCACGCTCTGCTGCTaGCTTAGGATGGATGGACTCCCACAGCGGGGAGATGCTGATGAC | + |
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Preference number: 1 (lower is better) Translates to: WSVPPTAHAPGTLCC*LRMDGLPQRGDADD Trigger: GTCATCAGCATCTCCCCGCTGTGGGAGTCCATCCATCCTAAGTCAGCAGCAGAGCGTGCCTGGGGCGTGAGCAGTTGGAGGGACCGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| 3UTR GCA 90 bp | GAAAATGACAATTGCACATTTGTGCTCAGTCACGACTGGGTAGACTaGCTTCCGACACGCACACTCCACTGGTCGGTCCCTCCAACTGCT | + |
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Preference number: 1 (lower is better) Translates to: ENDNCTFVLSHDWVD*LPTRTLHWSVPPTA Trigger: AGCAGTTGGAGGGACCGACCAGTGGAGTGTGCGTGTCGGAAGGCAGTCTACCCAGTCGTGACTGAGCACAAATGTGCAATTGTCATTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| 3UTR TCA 90 bp | TTTAATTCTAAAGGCATTAATAAAAATCTTGACATGCTAAGAAAATaGCAATTGCACATTTGTGCTCAGTCACGACTGGGTAGACTGCCT | + |
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Preference number: 1 (lower is better) Translates to: FNSKGINKNLDMLRK*QLHICAQSRLGRLP Trigger: AGGCAGTCTACCCAGTCGTGACTGAGCACAAATGTGCAATTGTCATTTTCTTAGCATGTCAAGATTTTTATTAATGCCTTTAGAATTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| 3UTR TCA 72 bp | CCTCCAACTGCTCACGCCCCAGGCACGCTCTGCTGCTaGCTTAGGATGGATGGACTCCCACAGCGGGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: PPTAHAPGTLCC*LRMDGLPQRGD Trigger: ATCTCCCCGCTGTGGGAGTCCATCCATCCTAAGTCAGCAGCAGAGCGTGCCTGGGGCGTGAGCAGTTGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| 3UTR CCA 72 bp | GAAAATGACAATTGCACATTTGTGCTCAGTCACGACTaGGTAGACTGCCTTCCGACACGCACACTCCACTGG | + |
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Preference number: 3 (lower is better) Translates to: ENDNCTFVLSHD*VDCLPTRTLHW Trigger: CCAGTGGAGTGTGCGTGTCGGAAGGCAGTCTACCCAGTCGTGACTGAGCACAAATGTGCAATTGTCATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR TCA 90 bp | CAGGCACGCTCTGCTGCTGACTTAGGATGGATGGACTCCCACAGCGGGGAGATGAATGCAGCCGTCTTCTaGCCAAACAGCAGAACACTT | + |
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Preference number: 4 (lower is better) Translates to: QARSAADLGWMDSHSGEMNAAVF*PNSRTL Trigger: AAGTGTTCTGCTGTTTGGTCAGAAGACGGCTGCATT...CATCTCCCCGCTGTGGGAGTCCATCCATCCTAAGTCAGCAGCAGAGCGTGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR GCA 90 bp | ACACGCACACTCCACTGGTCGGTCCCTCCAACTGCTCACGCCCCAGGCACGCTCAGGTCAGATAAGTTTTaGTCCTCTCTGTTTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: TRTLHWSVPPTAHAPGTLRSDKF*SSLFPY Trigger: ATATGGAAACAGAGAGGAGCAAAACTTATCTGACCT...GAGCGTGCCTGGGGCGTGAGCAGTTGGAGGGACCGACCAGTGGAGTGTGCGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR CCA 90 bp | GGGGAGATGCTGATGACGACACCACTTAGCCAAGAGTCCACTGATGACGAGGAGTCCACGGAGCAGCTTTaGACTTGCTGTGTGCTTTAC | + |
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Preference number: 4 (lower is better) Translates to: GEMLMTTPLSQESTDDEESTEQL*TCCVLY Trigger: GTAAAGCACACAGCAAGTCCAAAGCTGCTCCGTGGA...CTCCTCGTCATCAGTGGACTCTTGGCTAAGTGGTGTCGTCATCAGCATCTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR GCA 90 bp | AGCGGGGAGATGCTGATGACGACACCACTTAGCCAAGAGTCCACTGATGACGAGCCGTTCTTTAGAGCATaGTTAAAGGAAGCCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: SGEMLMTTPLSQESTDDEPFFRA*LKEATA Trigger: AGCTGTGGCTTCCTTTAAGCATGCTCTAAAGAACGG...CTCGTCATCAGTGGACTCTTGGCTAAGTGGTGTCGTCATCAGCATCTCCCCGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR CCA 90 bp | GGGGAGATGCTGATGACGACACCACTTAGCCAAGAGTCCACTGATGACGAGGAGTCTGGCTGTGCCTTTTaGCTTATCTGGAGTTTCACA | + |
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Preference number: 4 (lower is better) Translates to: GEMLMTTPLSQESTDDEESGCAF*LIWSFT Trigger: TGTGAAACTCCAGATAAGCCAAAAGGCACAGCCAGA...CTCCTCGTCATCAGTGGACTCTTGGCTAAGTGGTGTCGTCATCAGCATCTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR CCA 90 bp | AGCGGGGAGATGCTGATGACGACACCACTTAGCCAAGAGTCCACTGATGACGAGGTTCACTGTCGTCTGTaGAAACTTGACTTTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: SGEMLMTTPLSQESTDDEVHCRL*KLDFHS Trigger: AGAATGAAAGTCAAGTTTCCACAGACGACAGTGAAC...CTCGTCATCAGTGGACTCTTGGCTAAGTGGTGTCGTCATCAGCATCTCCCCGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR CAA 90 bp | CGACACGCACACTCCACTGGTCGGTCCCTCCAACTGCTCACGCCCCAGGCACGCGGCGGCGGCGGGCCGTaGAATTTTAGACCTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: RHAHSTGRSLQLLTPQARGGGGP*NFRPGF Trigger: AAAGCCAGGTCTAAAATTCAACGGCCCGCCGCCGCC...GCGTGCCTGGGGCGTGAGCAGTTGGAGGGACCGACCAGTGGAGTGTGCGTGTCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR CAA 90 bp | CGGTCCCTCCAACTGCTCACGCCCCAGGCACGCTCTGCTGCTGACTTAGGATGGTTCTGGCTGTGCCTTTaGGCTTATCTGGAGTTTCAC | + |
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Preference number: 5 (lower is better) Translates to: RSLQLLTPQARSAADLGWFWLCL*AYLEFH Trigger: GTGAAACTCCAGATAAGCCAAAAGGCACAGCCAGAA...CCATCCTAAGTCAGCAGCAGAGCGTGCCTGGGGCGTGAGCAGTTGGAGGGACCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS-3UTR CAA 90 bp | CTGTTCTTGTCGACCAGGGACACCGACACCCCATCTCCTGAGACAGAGCTGAACGTCGTCTGTGGAAACTaGACTTTCATTCTCCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: LFLSTRDTDTPSPETELNVVCGN*TFILLS Trigger: ACTCAGGAGAATGAAAGTCAAGTTTCCACAGACGAC...GTTCAGCTCTGTCTCAGGAGATGGGGTGTCGGTGTCCCTGGTCGACAAGAACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS TCA 72 bp | AGAGATGGGAGGGGGTGGCGGGATTATTGGTGGTCCTaGAGGGAACGGGGGCATCCAGCACGGCAGGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: RDGRGWRDYWWS*RERGHPARQEG Trigger: CCCTTCCTGCCGTGCTGGATGCCCCCGTTCCCTTCAGGACCACCAATAATCCCGCCACCCCCTCCCATCTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022147.15 |
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| CDS CAA 72 bp | CGATCTGGAGGAGTGTTCACTGTCGTCTGTGGAAACTaGACTTTCATTCTCCTGAGTGTTCTGTTCTGTACT | + |
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Preference number: 6 (lower is better) Translates to: RSGGVFTVVCGN*TFILLSVLFCT Trigger: AGTACAGAACAGAACACTCAGGAGAATGAAAGTCAAGTTTCCACAGACGACAGTGAACACTCCTCCAGATCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022147.15 ENSMUST00000143937.2 |
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| CDS CAA 90 bp | ACTTCTGAGCGATCTGGAGGAGTGTTCACTGTCGTCTGTGGAAACTaGACTTTCATTCTCCTGAGTGTTCTGTTCTGTACTATTAGCTAC | + |
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Preference number: 6 (lower is better) Translates to: TSERSGGVFTVVCGN*TFILLSVLFCTISY Trigger: GTAGCTAATAGTACAGAACAGAACACTCAGGAGAATGAAAGTCAAGTTTCCACAGACGACAGTGAACACTCCTCCAGATCGCTCAGAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022147.15 ENSMUST00000143937.2 |
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