Pregenerated sensors for SMLR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096546Ensembl transcript IDs: ENSMUST00000179685.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAACTGGTGTGTTCACTGTTCTTTCTCGTTTCCTGGTGGCCCTGTTaGCTGCTGCTCCGTGACCTTGAGAAATTCATGGTGCTTTGCCCA | + |
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Preference number: 1 (lower is better) Translates to: QLVCSLFFLVSWWPC*LLLRDLEKFMVLCP Trigger: TGGGCAAAGCACCATGAATTTCTCAAGGTCACGGAGCAGCAGTCAACAGGGCCACCAGGAAACGAGAAAGAACAGTGAACACACCAGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR GCA 90 bp | TGGTGTGTTCACTGTTCTTTCTCGTTTCCTGGTGGCCCTGTTGACTaGTGCTCCGTGACCTTGAGAAATTCATGGTGCTTTGCCCATTGG | + |
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Preference number: 1 (lower is better) Translates to: WCVHCSFSFPGGPVD*CSVTLRNSWCFAHW Trigger: CCAATGGGCAAAGCACCATGAATTTCTCAAGGTCACGGAGCAGCAGTCAACAGGGCCACCAGGAAACGAGAAAGAACAGTGAACACACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR-3UTR TCA 90 bp | AAGCATAGTCAACAATCAAAGAAACTCAAGATACGCCTGGTGCATTGCGCCCGTTCCTGGTGGCCCTGTTaGCTGCTGCTCCGTGACCTT | + |
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Preference number: 2 (lower is better) Translates to: KHSQQSKKLKIRLVHCARSWWPC*LLLRDL Trigger: AAGGTCACGGAGCAGCAGTCAACAGGGCCACCAGGA...ACGGGCGCAATGCACCAGGCGTATCTTGAGTTTCTTTGATTGTTGACTATGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR-3UTR CAA 90 bp | TGGTGCATTGCGCCCGTTAAAGAAATGTTTAAGTTCATGGTGCTTTCGGAGGAAATGGTGCTTTGCCCATaGGTGACACCAACCCCCACC | + |
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Preference number: 3 (lower is better) Translates to: WCIAPVKEMFKFMVLSEEMVLCP*VTPTPT Trigger: GGTGGGGGTTGGTGTCACCAATGGGCAAAGCACCAT...TTCCTCCGAAAGCACCATGAACTTAAACATTTCTTTAACGGGCGCAATGCACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR TCA 72 bp | TGTTCACTGTTCTTTCTCGTTTCCTGGTGGCCCTGTTaGCTGCTGCTCCGTGACCTTGAGAAATTCATGGTG | + |
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Preference number: 3 (lower is better) Translates to: CSLFFLVSWWPC*LLLRDLEKFMV Trigger: CACCATGAATTTCTCAAGGTCACGGAGCAGCAGTCAACAGGGCCACCAGGAAACGAGAAAGAACAGTGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR CCA 72 bp | AGCATAGTCAACAATCAAAGAAACTCAAGATACGCCTaGTGCATTGCGCCCGTTAAAGAAATGTTTAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: SIVNNQRNSRYA*CIAPVKEMFKF Trigger: GAACTTAAACATTTCTTTAACGGGCGCAATGCACCAGGCGTATCTTGAGTTTCTTTGATTGTTGACTATGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR GCA 72 bp | ATAGTCAACAATCAAAGAAACTCAAGATACGCCTGGTaGATTGCGCCCGTTAAAGAAATGTTTAAGTTCATG | + |
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Preference number: 3 (lower is better) Translates to: IVNNQRNSRYAW*IAPVKEMFKFM Trigger: CATGAACTTAAACATTTCTTTAACGGGCGCAATGCACCAGGCGTATCTTGAGTTTCTTTGATTGTTGACTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| 3UTR CAA 72 bp | TCAACAATCAAAGAAACTCAAGATACGCCTGGTGCATaGCGCCCGTTAAAGAAATGTTTAAGTTCATGGTGC | + |
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Preference number: 4 (lower is better) Translates to: STIKETQDTPGA*RPLKKCLSSWC Trigger: GCACCATGAACTTAAACATTTCTTTAACGGGCGCAATGCACCAGGCGTATCTTGAGTTTCTTTGATTGTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| CDS GCA 90 bp | AAACTTGTTCTGGCGATCAGAAGTGTGAGCCAGTTCTTCTTCAACTaGCATCAGTTTGATCCTGAAGTAGGCAAGAAGGAGGAGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: KLVLAIRSVSQFFFN*HQFDPEVGKKEEKQ Trigger: CTGCTTCTCCTCCTTCTTGCCTACTTCAGGATCAAACTGATGGCAGTTGAAGAAGAACTGGCTCACACTTCTGATCGCCAGAACAAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| CDS-3UTR CAA 90 bp | AGATACGCCTGGTGCATTGCGCCCGTTAAAGAAATGTTTAAGTTCATGGTGCTTAGGGAAGAACCAAACTaGTTCTGGCGATCAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: RYAWCIAPVKEMFKFMVLREEPN*FWRSEV Trigger: CACTTCTGATCGCCAGAACAAGTTTGGTTCTTCCCT...AAGCACCATGAACTTAAACATTTCTTTAACGGGCGCAATGCACCAGGCGTATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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| CDS TCA 72 bp | AGGGAAGAACCAAACTTGTTCTGGCGATCAGAAGTGTaGGCCAGTTCTTCTTCAACTGCCATCAGTTTGATC | + |
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Preference number: 6 (lower is better) Translates to: REEPNLFWRSEV*ASSSSTAISLI Trigger: GATCAAACTGATGGCAGTTGAAGAAGAACTGGCTCACACTTCTGATCGCCAGAACAAGTTTGGTTCTTCCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179685.3 |
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