Pregenerated sensors for SMIM9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073094Ensembl transcript IDs: ENSMUST00000101433.9, ENSMUST00000165080.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTCATTTTAAGCATATAACACATTCTCCAGCTCGTGGAATCTGTTaGGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCA | + |
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Preference number: 1 (lower is better) Translates to: SHFKHITHSPARGIC*VRYHTSPIKSSSSS Trigger: TGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAACAGATTCCACGAGCTGGAGAATGTGTTATATGCTTAAAATGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| 3UTR TCA 72 bp | AAGCATATAACACATTCTCCAGCTCGTGGAATCTGTTaGGTCAGATACCACACTTCCCCCATTAAGTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: KHITHSPARGIC*VRYHTSPIKSS Trigger: AGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAACAGATTCCACGAGCTGGAGAATGTGTTATATGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR CCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTGTCATCCATGGCCTCTaGAGTCCTGAGACTTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTVIHGL*SPETCL Trigger: CAGACAAGTCTCAGGACTCCAGAGGCCATGGATGAC...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR TCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTGAGGGATGGAGCTCTTaGAGAAATCTGACAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTEGWSS*RNLTGD Trigger: ATCACCTGTCAGATTTCTTCAAGAGCTCCATCCCTC...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR GCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTGGCTGCCCTCATTATTaGTGTGGTGACAAAAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTGCPHY*CGDKKS Trigger: GCTCTTTTTGTCACCACAGCAATAATGAGGGCAGCC...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR GCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTAAGAGCAAAAATAGCTaGTGGAGGGATGGAGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTKSKNS*WRDGAL Trigger: AAGAGCTCCATCCCTCCAGCAGCTATTTTTGCTCTT...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR CCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTAGCAAAAATAGCTGCTaGAGGGATGGAGCTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTSKNSC*RDGALE Trigger: TTCAAGAGCTCCATCCCTCCAGCAGCTATTTTTGCT...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR TCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTCTGAGACTTGTCTGTTaGTGTCAGAAGTATTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTLRLVC*CQKYSS Trigger: GGAAGAATACTTCTGACATCAACAGACAAGTCTCAG...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR CCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTGTCTTTTATTCACTATaGCTGCCCTCATTATTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTVFYSL*LPSLLL Trigger: CAGCAATAATGAGGGCAGCCATAGTGAATAAAAGAC...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR TCA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTACCCACCAAAAAGCTTaGTTAGATTCATATTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: VESDTTLPPLSLLVLQWTTHQKA*LDSYSA Trigger: TGCAGAATATGAATCTAATCAAGCTTTTTGGTGGGT...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS TCA 90 bp | AAAATAGCTGCTGGAGGGATGGAGCTCTTGAAGAAATCTGACAGGTaGTTTTTAAACTTGGTCATCCATGGCCTCTGGAGTCCTGAGACT | + |
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Preference number: 5 (lower is better) Translates to: KIAAGGMELLKKSDR*FLNLVIHGLWSPET Trigger: AGTCTCAGGACTCCAGAGGCCATGGATGACCAAGTTTAAAAATCACCTGTCAGATTTCTTCAAGAGCTCCATCCCTCCAGCAGCTATTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000101433.9 ENSMUST00000165080.2 |
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| CDS TCA 90 bp | AAGAGCAAAAATAGCTGCTGGAGGGATGGAGCTCTTGAAGAAATCTaGCAGGTGATTTTTAAACTTGGTCATCCATGGCCTCTGGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: KSKNSCWRDGALEEI*QVIFKLGHPWPLES Trigger: GGACTCCAGAGGCCATGGATGACCAAGTTTAAAAATCACCTGTCAGATTTCTTCAAGAGCTCCATCCCTCCAGCAGCTATTTTTGCTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000101433.9 ENSMUST00000165080.2 |
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| CDS-3UTR CAA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTCCTGAGACTTGTCTGTaGATGTCAGAAGTATTCTTC | + |
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Preference number: 5 (lower is better) Translates to: VESDTTLPPLSLLVLQWTPETCL*MSEVFF Trigger: GAAGAATACTTCTGACATCAACAGACAAGTCTCAGG...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS-3UTR CAA 90 bp | GTTGAGTCAGATACCACACTTCCCCCATTAAGTCTTCTAGTTCTTCAGTGGACTCACCCACCAAAAAGCTaGATTAGATTCATATTCTGC | + |
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Preference number: 5 (lower is better) Translates to: VESDTTLPPLSLLVLQWTHPPKS*IRFIFC Trigger: GCAGAATATGAATCTAATCAAGCTTTTTGGTGGGTG...AGTCCACTGAAGAACTAGAAGACTTAATGGGGGAAGTGTGGTATCTGACTCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101433.9 |
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| CDS TCA 72 bp | GCTGGAGGGATGGAGCTCTTGAAGAAATCTGACAGGTaGTTTTTAAACTTGGTCATCCATGGCCTCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: AGGMELLKKSDR*FLNLVIHGLWS Trigger: ACTCCAGAGGCCATGGATGACCAAGTTTAAAAATCACCTGTCAGATTTCTTCAAGAGCTCCATCCCTCCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000101433.9 ENSMUST00000165080.2 |
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| CDS CAA 72 bp | GTCATCCATGGCCTCTGGAGTCCTGAGACTTGTCTGTaGATGTCAGAAGTATTCTTCCTAATAGCAAATACT | + |
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Preference number: 6 (lower is better) Translates to: VIHGLWSPETCL*MSEVFFLIANT Trigger: AGTATTTGCTATTAGGAAGAATACTTCTGACATCAACAGACAAGTCTCAGGACTCCAGAGGCCATGGATGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101433.9 ENSMUST00000165080.2 |
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| CDS CAA 90 bp | TTAAACTTGGTCATCCATGGCCTCTGGAGTCCTGAGACTTGTCTGTaGATGTCAGAAGTATTCTTCCTAATAGCAAATACTCCCATTGCA | + |
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Preference number: 6 (lower is better) Translates to: LNLVIHGLWSPETCL*MSEVFFLIANTPIA Trigger: TGCAATGGGAGTATTTGCTATTAGGAAGAATACTTCTGACATCAACAGACAAGTCTCAGGACTCCAGAGGCCATGGATGACCAAGTTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101433.9 ENSMUST00000165080.2 |
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