Pregenerated sensors for SMIM7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044600Ensembl transcript IDs: ENSMUST00000058733.9, ENSMUST00000167290.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTACAATGCTAGGCAAGTGGGTAGGCTCAGGCATGCTGCGGGTGTaGAGGACACAATCAACAATGTCTGCAGCAGCTGTGCAGCCTGAA | + |
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Preference number: 1 (lower is better) Translates to: VTMLGKWVGSGMLRV*RTQSTMSAAAVQPE Trigger: TTCAGGCTGCACAGCTGCTGCAGACATTGTTGATTGTGTCCTTCACACCCGCAGCATGCCTGAGCCTACCCACTTGCCTAGCATTGTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 90 bp | AGAAAGCCATCCCAACTATCCAAGGCTGGGGATCAGCCAACAGAGTaGCATGTTACAATGCTAGGCAAGTGGGTAGGCTCAGGCATGCTG | + |
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Preference number: 1 (lower is better) Translates to: RKPSQLSKAGDQPTE*HVTMLGKWVGSGML Trigger: CAGCATGCCTGAGCCTACCCACTTGCCTAGCATTGTAACATGCCACTCTGTTGGCTGATCCCCAGCCTTGGATAGTTGGGATGGCTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 90 bp | GAGGAGGAAACGTTTGGAAGTAAGACCTCACTGGCCCCAGACTGTTaGGTCCACCAGCATAGACCTGGTAGTGCAAAAGAGACTGCTAGA | + |
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Preference number: 1 (lower is better) Translates to: EEETFGSKTSLAPDC*VHQHRPGSAKETAR Trigger: TCTAGCAGTCTCTTTTGCACTACCAGGTCTATGCTGGTGGACCCAACAGTCTGGGGCCAGTGAGGTCTTACTTCCAAACGTTTCCTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 90 bp | CAGTTCACAACTGGCTGTAACTCTAGCTGCAGATTAGAGGACTTCTaGCCTCTGCAAGCCCTGCATCCACATGTGTGCAGACATGCATGC | + |
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Preference number: 1 (lower is better) Translates to: QFTTGCNSSCRLEDF*PLQALHPHVCRHAC Trigger: GCATGCATGTCTGCACACATGTGGATGCAGGGCTTGCAGAGGCCAGAAGTCCTCTAATCTGCAGCTAGAGTTACAGCCAGTTGTGAACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR TCA 90 bp | AAAAGAGAGCCCCAAAGCAAGCCAGCTGCTACAGCTTTCAAATGCTaGTTAAAGTCCCTCAGCACTGCCGGCATGGCCATCTCTAGATGG | + |
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Preference number: 1 (lower is better) Translates to: KREPQSKPAATAFKC*LKSLSTAGMAISRW Trigger: CCATCTAGAGATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCAGCTGGCTTGCTTTGGGGCTCTCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR TCA 90 bp | AGGGGCTCAGGACACAGGTCACTCTCAAAAGACCCAGCACTCACATaGCAGTTCACAACTGGCTGTAACTCTAGCTGCAGATTAGAGGAC | + |
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Preference number: 1 (lower is better) Translates to: RGSGHRSLSKDPALT*QFTTGCNSSCRLED Trigger: GTCCTCTAATCTGCAGCTAGAGTTACAGCCAGTTGTGAACTGTCATGTGAGTGCTGGGTCTTTTGAGAGTGACCTGTGTCCTGAGCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR GCA 90 bp | AAAGAAAGAAACCAATCCAAAAAGAGAGCCCCAAAGCAAGCCAGCTaGTACAGCTTTCAAATGCTGATTAAAGTCCCTCAGCACTGCCGG | + |
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Preference number: 1 (lower is better) Translates to: KERNQSKKRAPKQAS*YSFQMLIKVPQHCR Trigger: CCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCAGCTGGCTTGCTTTGGGGCTCTCTTTTTGGATTGGTTTCTTTCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR GCA 90 bp | GGACTTCTGGCCTCTGCAAGCCCTGCATCCACATGTGTGCAGACATaGATGCAGGCAGAATACCATACATATAAAACAGAACAATCTTTA | + |
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Preference number: 1 (lower is better) Translates to: GLLASASPASTCVQT*MQAEYHTYKTEQSL Trigger: TAAAGATTGTTCTGTTTTATATGTATGGTATTCTGCCTGCATGCATGTCTGCACACATGTGGATGCAGGGCTTGCAGAGGCCAGAAGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 90 bp | CAAGCAACAATAAAGGAGTGGCCCCAAAGTCACTTTATTAACAAGTaGCTTGAAAGCACAGAGAGGTGTCTGCTAACATCACCACTAGCA | + |
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Preference number: 1 (lower is better) Translates to: QATIKEWPQSHFINK*LESTERCLLTSPLA Trigger: TGCTAGTGGTGATGTTAGCAGACACCTCTCTGTGCTTTCAAGCCACTTGTTAATAAAGTGACTTTGGGGCCACTCCTTTATTGTTGCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGCAGAAAGCCATCCCAACTATCCAAGGCTGGGGATCAGCCAACAGAGTGCTTTGTCACTGTGGCTaGCGAGGGTCAGGGAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: ERQKAIPTIQGWGSANRVLCHCG*RGSGSW Trigger: CCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAAG...CACTCTGTTGGCTGATCCCCAGCCTTGGATAGTTGGGATGGCTTTCTGCCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTCTGACTTTGTCACTGTGGCTGACGAGGGTCAGGGAGCTGGGAAATGGACATTGATGTCCAGCAGGTaGTCTCTGGGTTCCACGCAG | + |
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Preference number: 2 (lower is better) Translates to: KSDFVTVADEGQGAGKWTLMSSR*SLGSTQ Trigger: CTGCGTGGAACCCAGAGATCACCTGCTGGACATCAA...TGTCCATTTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAAGTCAGACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR GCA 90 bp | TCCCAAGGGAGGAGGACCGGCTCCTCCAAATGTTGGAGCAATCTTTGGCTGCCCCAGGAGAAGATAGAATaGCAGCACAAGGTAAAGACC | + |
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Preference number: 2 (lower is better) Translates to: SQGRRTGSSKCWSNLWLPQEKIE*QHKVKT Trigger: GGTCTTTACCTTGTGCTGGCATTCTATCTTCTCCTG...GGGCAGCCAAAGATTGCTCCAACATTTGGAGGAGCCGGTCCTCCTCCCTTGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTACAGCTTTCAAATGCTGATTAAAGTCCCTCAGCACTGCCGGCATGGCCATCCCAGGTCAGGTTTCTaGAGAAGCTGGGCCAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: CYSFQMLIKVPQHCRHGHPRSGF*RSWARR Trigger: TCTCCTGGCCCAGCTTCTCCAGAAACCTGACCTGGG...ATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTACAGCTTTCAAATGCTGATTAAAGTCCCTCAGCACTGCCGGCATGGCCATTTGATGTCCAGCAGGTaGTCTCTGGGTTCCACGCAG | + |
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Preference number: 2 (lower is better) Translates to: CYSFQMLIKVPQHCRHGHLMSSR*SLGSTQ Trigger: CTGCGTGGAACCCAGAGATCACCTGCTGGACATCAA...ATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | TTTGTCACTGTGGCTGACGAGGGTCAGGGAGCTGGGAAATGGACATTCTCCACCACAGAAATAGAGCCTTaGTGTCCAGCAGGTGATCTC | + |
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Preference number: 2 (lower is better) Translates to: FVTVADEGQGAGKWTFSTTEIEP*CPAGDL Trigger: GAGATCACCTGCTGGACATCAAGGCTCTATTTCTGT...GGTGGAGAATGTCCATTTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | AGGACACAATCAACAATGTCTGCAGCAGCTGTGCAGCCTGAACTTAGACTTGACGAAGTAAGACCTCACTaGCCCCAGACTGTTGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: RTQSTMSAAAVQPELRLDEVRPH*PQTVGS Trigger: GGACCCAACAGTCTGGGGCCAGTGAGGTCTTACTTC...GTCAAGTCTAAGTTCAGGCTGCACAGCTGCTGCAGACATTGTTGATTGTGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTACAGCTTTCAAATGCTGATTAAAGTCCCTCAGCACTGCCGGCATGGCCATTGTTGGAGCAATCTTTaGCTGCCCCAGGTAGACCCA | + |
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Preference number: 2 (lower is better) Translates to: CYSFQMLIKVPQHCRHGHCWSNL*LPQVDP Trigger: TGGGTCTACCTGGGGCAGCCAAAGATTGCTCCAACA...ATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CAA 90 bp | CACAATCAACAATGTCTGCAGCAGCTGTGCAGCCTGAACTTAGACTaGACCCAGTTCCCACATTACCAGAGTTTTCCCCATAGTTCCCGG | + |
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Preference number: 2 (lower is better) Translates to: HNQQCLQQLCSLNLD*TQFPHYQSFPHSSR Trigger: CCGGGAACTATGGGGAAAACTCTGGTAATGTGGGAACTGGGTCAAGTCTAAGTTCAGGCTGCACAGCTGCTGCAGACATTGTTGATTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | CTTATTTGTTCAGGCTGGGTGGTGGGAGGCAGAAGACAGCACTTCATATCTTGTGGCATGCTGCGGGTGTaGAGGACACAATCAACAATG | + |
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Preference number: 2 (lower is better) Translates to: LICSGWVVGGRRQHFISCGMLRV*RTQSTM Trigger: CATTGTTGATTGTGTCCTTCACACCCGCAGCATGCC...ACAAGATATGAAGTGCTGTCTTCTGCCTCCCACCACCCAGCCTGAACAAATAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTTTCTGGAGAAGCTGGGCCAGGAGAAGATAGAATGCCAGCACAAGGTAAAGCAGGGAGCTGGGAAATaGACATTCTCCACCCAAATG | + |
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Preference number: 2 (lower is better) Translates to: RFLEKLGQEKIECQHKVKQGAGK*TFSTQM Trigger: CATTTGGGTGGAGAATGTCCATTTCCCAGCTCCCTG...CTTTACCTTGTGCTGGCATTCTATCTTCTCCTGGCCCAGCTTCTCCAGAAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGACACAGGTCACTCTCAAAAGACCCAGCACTCACATGACAGTTCACAACTGAGATTAGAGGACTTCTaGCCTCTGCAAGCCCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: QDTGHSQKTQHSHDSSQLRLEDF*PLQALH Trigger: ATGCAGGGCTTGCAGAGGCCAGAAGTCCTCTAATCT...CAGTTGTGAACTGTCATGTGAGTGCTGGGTCTTTTGAGAGTGACCTGTGTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR GCA 90 bp | TCAATCAGCACAGATTCCATCAAGATGGTCTCAAAGACTAACCAACCAGCCAATGGCCTCTGCAAGCCCTaGATCCACATGTGTGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: SISTDSIKMVSKTNQPANGLCKP*IHMCAD Trigger: GTCTGCACACATGTGGATGCAGGGCTTGCAGAGGCC...ATTGGCTGGTTGGTTAGTCTTTGAGACCATCTTGATGGAATCTGTGCTGATTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTCTGACTTTGTCACTGTGGCTGACGAGGGTCAGGGAGCTGGGAAATGGACATTCTGGGAAGGTCCCTaGTTTTCCATTGAGAAGATT | + |
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Preference number: 2 (lower is better) Translates to: KSDFVTVADEGQGAGKWTFWEGP*FSIEKI Trigger: AATCTTCTCAATGGAAAACCAGGGACCTTCCCAGAA...TGTCCATTTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAAGTCAGACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | AATCACCATCAATTCAACCAAGAAATAGCCCAGGTCAGGTTTCTGGAGAAGCTGCGAGGGTCAGGGAGCTaGGAAATGGACATTCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: NHHQFNQEIAQVRFLEKLRGSGS*EMDILH Trigger: GTGGAGAATGTCCATTTCCCAGCTCCCTGACCCTCG...CAGCTTCTCCAGAAACCTGACCTGGGCTATTTCTTGGTTGAATTGATGGTGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | AGGACACAATCAACAATGTCTGCAGCAGCTGTGCAGCCTGAACTTAGACTTGACGCTGAGGCAGGAGAATaGAAAGTTCTCAATCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: RTQSTMSAAAVQPELRLDAEAGE*KVLNQH Trigger: GTGCTGATTGAGAACTTTCCATTCTCCTGCCTCAGC...GTCAAGTCTAAGTTCAGGCTGCACAGCTGCTGCAGACATTGTTGATTGTGTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGCAGAAAGCCATCCCAACTATCCAAGGCTGGGGATCAGCCAACAGAGTGATCTTGTCTCACTACTaGAAAGATAAGGAGTTCAAG | + |
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Preference number: 2 (lower is better) Translates to: ERQKAIPTIQGWGSANRVILSHY*KDKEFK Trigger: CTTGAACTCCTTATCTTTTCAGTAGTGAGACAAGAT...CACTCTGTTGGCTGATCCCCAGCCTTGGATAGTTGGGATGGCTTTCTGCCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR GCA 90 bp | CTTATTTGTTCAGGCTGGGTGGTGGGAGGCAGAAGACAGCACTTCATATCTTGTACATGTGTGCAGACATaGATGCAGGCAGAATACCAT | + |
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Preference number: 2 (lower is better) Translates to: LICSGWVVGGRRQHFISCTCVQT*MQAEYH Trigger: ATGGTATTCTGCCTGCATGCATGTCTGCACACATGT...ACAAGATATGAAGTGCTGTCTTCTGCCTCCCACCACCCAGCCTGAACAAATAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTTTCTGGAGAAGCTGGGCCAGGAGAAGATAGAATGCCAGCACAAGGTAAAGTTCTGGGAAGGTCCCTaGTTTTCCATTGAGAAGATT | + |
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Preference number: 2 (lower is better) Translates to: RFLEKLGQEKIECQHKVKFWEGP*FSIEKI Trigger: AATCTTCTCAATGGAAAACCAGGGACCTTCCCAGAA...CTTTACCTTGTGCTGGCATTCTATCTTCTCCTGGCCCAGCTTCTCCAGAAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | CCCCAAAGTCACTTTATTAACAAGTGGCTTGAAAGCACAGAGAGGTGTCTGCTAGTGCAAGGCCAGGAGTaGTGGCATACACCTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: PQSHFINKWLESTERCLLVQGQE*WHTPLI Trigger: GATTAAAGGTGTATGCCACCACTCCTGGCCTTGCAC...TAGCAGACACCTCTCTGTGCTTTCAAGCCACTTGTTAATAAAGTGACTTTGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR TCA 90 bp | CCCAGCATGATCACTTGTGGACAACTTGACCTGTGTGTTTGTCAGTGTTGTAAAACAGAAATAGAGCCTTaGTGTCCAGCAGGTGATCTC | + |
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Preference number: 2 (lower is better) Translates to: PSMITCGQLDLCVCQCCKTEIEP*CPAGDL Trigger: GAGATCACCTGCTGGACATCAAGGCTCTATTTCTGT...TTTACAACACTGACAAACACACAGGTCAAGTTGTCCACAAGTGATCATGCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | TCACAAGCAACAATAAAGGAGTGGCCCCAAAGTCACTTTATTAACAAGTGGCTTCAAGGCCAGGAGTGGTaGCATACACCTTTAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: SQATIKEWPQSHFINKWLQGQEW*HTPLIP Trigger: TGGGATTAAAGGTGTATGCCACCACTCCTGGCCTTG...AAGCCACTTGTTAATAAAGTGACTTTGGGGCCACTCCTTTATTGTTGCTTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CCA 90 bp | CCCAGCATGATCACTTGTGGACAACTTGACCTGTGTGTTTGTCAGTGTTGTAAAGCAACAATAAAGGAGTaGCCCCAAAGTCACTTTATT | + |
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Preference number: 2 (lower is better) Translates to: PSMITCGQLDLCVCQCCKATIKE*PQSHFI Trigger: AATAAAGTGACTTTGGGGCCACTCCTTTATTGTTGC...TTTACAACACTGACAAACACACAGGTCAAGTTGTCCACAAGTGATCATGCTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 72 bp | GTCACTGTGGCTGACGAGGGTCAGGGAGCTGGGAAATaGACATTCTCCACCCAAATGAGCTTGGGCCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: VTVADEGQGAGK*TFSTQMSLGLL Trigger: CAGAAGGCCCAAGCTCATTTGGGTGGAGAATGTCCATTTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR CCA 72 bp | GGGGTGAGGAGGAAACGTTTGGAAGTAAGACCTCACTaGCCCCAGACTGTTGGGTCCACCAGCATAGACCTG | + |
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Preference number: 3 (lower is better) Translates to: GVRRKRLEVRPH*PQTVGSTSIDL Trigger: CAGGTCTATGCTGGTGGACCCAACAGTCTGGGGCCAGTGAGGTCTTACTTCCAAACGTTTCCTCCTCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR TCA 72 bp | CTAGGCAAGTGGGTAGGCTCAGGCATGCTGCGGGTGTaGAGGACACAATCAACAATGTCTGCAGCAGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: LGKWVGSGMLRV*RTQSTMSAAAV Trigger: CACAGCTGCTGCAGACATTGTTGATTGTGTCCTTCACACCCGCAGCATGCCTGAGCCTACCCACTTGCCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR TCA 72 bp | CCCCAAAGCAAGCCAGCTGCTACAGCTTTCAAATGCTaGTTAAAGTCCCTCAGCACTGCCGGCATGGCCATC | + |
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Preference number: 3 (lower is better) Translates to: PQSKPAATAFKC*LKSLSTAGMAI Trigger: GATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCAGCTGGCTTGCTTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 72 bp | ACGTTTGGAAGTAAGACCTCACTGGCCCCAGACTGTTaGGTCCACCAGCATAGACCTGGTAGTGCAAAAGAG | + |
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Preference number: 3 (lower is better) Translates to: TFGSKTSLAPDC*VHQHRPGSAKE Trigger: CTCTTTTGCACTACCAGGTCTATGCTGGTGGACCCAACAGTCTGGGGCCAGTGAGGTCTTACTTCCAAACGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 72 bp | ACTGGCTGTAACTCTAGCTGCAGATTAGAGGACTTCTaGCCTCTGCAAGCCCTGCATCCACATGTGTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: TGCNSSCRLEDF*PLQALHPHVCR Trigger: TCTGCACACATGTGGATGCAGGGCTTGCAGAGGCCAGAAGTCCTCTAATCTGCAGCTAGAGTTACAGCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 72 bp | TCCCAACTATCCAAGGCTGGGGATCAGCCAACAGAGTaGCATGTTACAATGCTAGGCAAGTGGGTAGGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SQLSKAGDQPTE*HVTMLGKWVGS Trigger: TGAGCCTACCCACTTGCCTAGCATTGTAACATGCCACTCTGTTGGCTGATCCCCAGCCTTGGATAGTTGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CAA 90 bp | GGCTGTAACTCTAGCTGCAGATTAGAGGACTTCTGGCCTCTGCAAGCCCTGCATGTGAGGAGGAAACGTTaGGAAGTAAGACCTCACTGG | + |
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Preference number: 3 (lower is better) Translates to: GCNSSCRLEDFWPLQALHVRRKR*EVRPHW Trigger: CCAGTGAGGTCTTACTTCCAAACGTTTCCTCCTCAC...ATGCAGGGCTTGCAGAGGCCAGAAGTCCTCTAATCTGCAGCTAGAGTTACAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTACAGCTTTCAAATGCTGATTAAAGTCCCTCAGCACTGCCGGCATGGCCATTCATGCACCTCAAGCTaGAGCTCCCCTCCTTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: CYSFQMLIKVPQHCRHGHSCTSS*SSPPSK Trigger: CTTTGAAGGAGGGGAGCTCAAGCTTGAGGTGCATGA...ATGGCCATGCCGGCAGTGCTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR TCA 72 bp | GTACAACACAGTCCTCCGCTCTGCAGCATCCCAGCATaGTCACTTGTGGACAACTTGACCTGTGTGTTTGTC | + |
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Preference number: 3 (lower is better) Translates to: VQHSPPLCSIPA*SLVDNLTCVFV Trigger: GACAAACACACAGGTCAAGTTGTCCACAAGTGATCATGCTGGGATGCTGCAGAGCGGAGGACTGTGTTGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR TCA 72 bp | GGACACAGGTCACTCTCAAAAGACCCAGCACTCACATaGCAGTTCACAACTGGCTGTAACTCTAGCTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: GHRSLSKDPALT*QFTTGCNSSCR Trigger: TCTGCAGCTAGAGTTACAGCCAGTTGTGAACTGTCATGTGAGTGCTGGGTCTTTTGAGAGTGACCTGTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CAA 90 bp | GACGAGGGTCAGGGAGCTGGGAAATGGACATTCTCCACCCAAATGAGCTTGGGCCCATTGAGAAGATTCTaGAAGTCATCAGAAACAGAA | + |
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Preference number: 3 (lower is better) Translates to: DEGQGAGKWTFSTQMSLGPLRRF*KSSETE Trigger: TTCTGTTTCTGATGACTTCAAGAATCTTCTCAATGG...GCCCAAGCTCATTTGGGTGGAGAATGTCCATTTCCCAGCTCCCTGACCCTCGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR-3UTR CAA 90 bp | AAGGGAAAGAGCTATTGCTTAACAGCTTCTAGAACATCTGACTTGAGAGTCTCACGGCTCCTCCAAATGTaGGAGCAATCTTTGGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: KGKSYCLTASRTSDLRVSRLLQM*EQSLAA Trigger: GGCAGCCAAAGATTGCTCCAACATTTGGAGGAGCCG...TGAGACTCTCAAGTCAGATGTTCTAGAAGCTGTTAAGCAATAGCTCTTTCCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR GCA 72 bp | AACCAATCCAAAAAGAGAGCCCCAAAGCAAGCCAGCTaGTACAGCTTTCAAATGCTGATTAAAGTCCCTCAG | + |
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Preference number: 3 (lower is better) Translates to: NQSKKRAPKQAS*YSFQMLIKVPQ Trigger: CTGAGGGACTTTAATCAGCATTTGAAAGCTGTAGCAGCTGGCTTGCTTTGGGGCTCTCTTTTTGGATTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGAGAGACCCAGAAACCCAAACCTTCAGAGTACGCTGCCAACATCACAAGCACCATTGAGAAGATTCTaGAAGTCATCAGAAACAGAA | + |
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Preference number: 3 (lower is better) Translates to: KERPRNPNLQSTLPTSQAPLRRF*KSSETE Trigger: TTCTGTTTCTGATGACTTCAAGAATCTTCTCAATGG...TGCTTGTGATGTTGGCAGCGTACTCTGAAGGTTTGGGTTTCTGGGTCTCTCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR-3UTR CAA 90 bp | CCCAGCATGATCACTTGTGGACAACTTGACCTGTGTGTTTGTCAGTGTTGTAAATCTAGAACATCTGACTaGAGAGTCTCAAATGGTTCT | + |
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Preference number: 3 (lower is better) Translates to: PSMITCGQLDLCVCQCCKSRTSD*RVSNGS Trigger: AGAACCATTTGAGACTCTCAAGTCAGATGTTCTAGA...TTTACAACACTGACAAACACACAGGTCAAGTTGTCCACAAGTGATCATGCTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CCA 72 bp | GTTGGGATAACAGGTTTAACCTTCAGGAGCACAAAGTaGGTTGTCACTTCAGGTTACATATATCTGGTTATA | + |
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Preference number: 3 (lower is better) Translates to: VGITGLTFRSTK*VVTSGYIYLVI Trigger: TATAACCAGATATATGTAACCTGAAGTGACAACCCACTTTGTGCTCCTGAAGGTTAAACCTGTTATCCCAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR GCA 72 bp | TTACATATATCTGGTTATAGCAAGGGAAAGAGCTATTaGTTAACAGCTTCTAGAACATCTGACTTGAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: LHISGYSKGKSY*LTASRTSDLRV Trigger: GACTCTCAAGTCAGATGTTCTAGAAGCTGTTAAGCAATAGCTCTTTCCCTTGCTATAACCAGATATATGTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CAA 72 bp | GGTGTCCCAAGGGAGGAGGACCGGCTCCTCCAAATGTaGGAGCAATCTTTGGCTGCCCCAGGTAGACCCAGT | + |
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Preference number: 4 (lower is better) Translates to: GVPREEDRLLQM*EQSLAAPGRPS Trigger: ACTGGGTCTACCTGGGGCAGCCAAAGATTGCTCCAACATTTGGAGGAGCCGGTCCTCCTCCCTTGGGACACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| 3UTR CAA 72 bp | GAGGAGGACCGGCTCCTCCAAATGTTGGAGCAATCTTaGGCTGCCCCAGGTAGACCCAGTTATGGGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: EEDRLLQMLEQS*AAPGRPSYGVR Trigger: CCTCACCCCATAACTGGGTCTACCTGGGGCAGCCAAAGATTGCTCCAACATTTGGAGGAGCCGGTCCTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| CDS-3UTR TCA 90 bp | TTTGTCACTGTGGCTGACGAGGGTCAGGGAGCTGGGAAATGGACATTCTCCACCTCATGCAGAGCATCATaGACACATTCCACAGTGCGA | + |
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Preference number: 4 (lower is better) Translates to: FVTVADEGQGAGKWTFSTSCRAS*THSTVR Trigger: TCGCACTGTGGAATGTGTTCATGATGCTCTGCATGA...GGTGGAGAATGTCCATTTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| CDS-3UTR GCA 90 bp | AAGTCTGACTTTGTCACTGTGGCTGACGAGGGTCAGGGAGCTGGGAAATGGACAGGATGTTGTCTCCTGTaGTGGGTTCCTTCGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: KSDFVTVADEGQGAGKWTGCCLL*WVPSIL Trigger: AAGAATCGAAGGAACCCAGCACAGGAGACAACATCC...TGTCCATTTCCCAGCTCCCTGACCCTCGTCAGCCACAGTGACAAAGTCAGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| 3UTR CAA 72 bp | CAATGTCTGCAGCAGCTGTGCAGCCTGAACTTAGACTaGACCCAGTTCCCACATTACCAGAGTTTTCCCCAT | + |
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Preference number: 4 (lower is better) Translates to: QCLQQLCSLNLD*TQFPHYQSFPH Trigger: ATGGGGAAAACTCTGGTAATGTGGGAACTGGGTCAAGTCTAAGTTCAGGCTGCACAGCTGCTGCAGACATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167290.8 |
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| CDS-3UTR TCA 90 bp | CCTTCTGGGAAGGTCCCTGGTTTTCCATTGAGAAGATTCTTGAAGTCATCAGAATCATGCAGAGCATCATaGACACATTCCACAGTGCGA | + |
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Preference number: 4 (lower is better) Translates to: PSGKVPGFPLRRFLKSSESCRAS*THSTVR Trigger: TCGCACTGTGGAATGTGTTCATGATGCTCTGCATGA...TTCTGATGACTTCAAGAATCTTCTCAATGGAAAACCAGGGACCTTCCCAGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| CDS-3UTR GCA 90 bp | TCTGGGAAGGTCCCTGGTTTTCCATTGAGAAGATTCTTGAAGTCATCAGAAACAGGATGTTGTCTCCTGTaGTGGGTTCCTTCGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: SGKVPGFPLRRFLKSSETGCCLL*WVPSIL Trigger: AAGAATCGAAGGAACCCAGCACAGGAGACAACATCC...TGTTTCTGATGACTTCAAGAATCTTCTCAATGGAAAACCAGGGACCTTCCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| CDS GCA 90 bp | GGAAATACCTCAGGCTTAGTAAAAACTCTCGGATGTTGTCTCCTGTaGTGGGTTCCTTCGATTCTTCCCCAAAGCCTTGTGTGTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: GNTSGLVKTLGCCLL*WVPSILPQSLVCPS Trigger: AGAAGGACACACAAGGCTTTGGGGAAGAATCGAAGGAACCCAGCACAGGAGACAACATCCGAGAGTTTTTACTAAGCCTGAGGTATTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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| CDS CCA 72 bp | GGCTTAGTAAAAACTCTCGGATGTTGTCTCCTGTGCTaGGTTCCTTCGATTCTTCCCCAAAGCCTTGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: GLVKTLGCCLLC*VPSILPQSLVC Trigger: ACACACAAGGCTTTGGGGAAGAATCGAAGGAACCCAGCACAGGAGACAACATCCGAGAGTTTTTACTAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000058733.9 ENSMUST00000167290.8 |
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