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Pregenerated sensors for SMIM6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075420

Ensembl transcript IDs: ENSMUST00000132961.2

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTTTCTTGAGCCAGAGGGAATGGAAGCCCACTGCTGGTCGGGGCTaGGCAGATCAGCCCCTCTCTCTCTGCTGCCTTCTAGGACCCGGA +
Preference number: 1 (lower is better)
Translates to: SFLSQREWKPTAGRG*ADQPLSLCCLLGPG
Trigger: TCCGGGTCCTAGAAGGCAGCAGAGAGAGAGGGGCTGATCTGCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR TCA 90 bp GGCCAACCCCTAGGCAAGGTCCAATGGTTCCCAGAGATTCTTTCTTaGGCCAGAGGGAATGGAAGCCCACTGCTGGTCGGGGCTGAGCAG +
Preference number: 1 (lower is better)
Translates to: GQPLGKVQWFPEILS*ARGNGSPLLVGAEQ
Trigger: CTGCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGAATCTCTGGGAACCATTGGACCTTGCCTAGGGGTTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 90 bp GGTTCCCAGAGATTCTTTCTTGAGCCAGAGGGAATGGAAGCCCACTaGTGGTCGGGGCTGAGCAGATCAGCCCCTCTCTCTCTGCTGCCT +
Preference number: 1 (lower is better)
Translates to: GSQRFFLEPEGMEAH*WSGLSRSAPLSLLP
Trigger: AGGCAGCAGAGAGAGAGGGGCTGATCTGCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGAATCTCTGGGAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR CCA 90 bp TCCCAGAGATTCTTTCTTGAGCCAGAGGGAATGGAAGCCCACTGCTaGTCGGGGCTGAGCAGATCAGCCCCTCTCTCTCTGCTGCCTTCT +
Preference number: 1 (lower is better)
Translates to: SQRFFLEPEGMEAHC*SGLSRSAPLSLLPS
Trigger: AGAAGGCAGCAGAGAGAGAGGGGCTGATCTGCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGAATCTCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 90 bp CTGCTTGGGCAGGGACTCTCATCAGAAGGTCTGGTTAGCCACTGCTaGTCTCTCTCATCTGAGGCAGAGCAGAGTTCTTCTCCGTGTGCT +
Preference number: 1 (lower is better)
Translates to: LLGQGLSSEGLVSHC*SLSSEAEQSSSPCA
Trigger: AGCACACGGAGAAGAACTCTGCTCTGCCTCAGATGAGAGAGAGCAGCAGTGGCTAACCAGACCTTCTGATGAGAGTCCCTGCCCAAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR CCA 90 bp AGAGAGCCAGAAATGGTACCACACCTGCCTTCCCACCTGGCTAACTaGCCAACCCCTAGGCAAGGTCCAATGGTTCCCAGAGATTCTTTC +
Preference number: 1 (lower is better)
Translates to: REPEMVPHLPSHLAN*PTPRQGPMVPRDSF
Trigger: GAAAGAATCTCTGGGAACCATTGGACCTTGCCTAGGGGTTGGCCAGTTAGCCAGGTGGGAAGGCAGGTGTGGTACCATTTCTGGCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR CCA 90 bp GGACTTGAAAATAGCTGCTTGGGCAGGGACTCTCATCAGAAGGTCTaGTTAGCCACTGCTGCTCTCTCTCATCTGAGGCAGAGCAGAGTT +
Preference number: 1 (lower is better)
Translates to: GLENSCLGRDSHQKV*LATAALSHLRQSRV
Trigger: AACTCTGCTCTGCCTCAGATGAGAGAGAGCAGCAGTGGCTAACCAGACCTTCTGATGAGAGTCCCTGCCCAAGCAGCTATTTTCAAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 90 bp CATTTGACATTTCGTGTCCTTCTCTGTCAAGGACTTGAAAATAGCTaGTTGGGCAGGGACTCTCATCAGAAGGTCTGGTTAGCCACTGCT +
Preference number: 1 (lower is better)
Translates to: HLTFRVLLCQGLENS*LGRDSHQKVWLATA
Trigger: AGCAGTGGCTAACCAGACCTTCTGATGAGAGTCCCTGCCCAAGCAGCTATTTTCAAGTCCTTGACAGAGAAGGACACGAAATGTCAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR-3UTR GCA 90 bp AGATTCTTTCTTGAGCCAGAGGGAATGGAAGCCCACTGCTGGTCGGGGCTGAGCCAGCCCCTCTCTCTCTaGTGCCTTCTAGGACCCGGA +
Preference number: 2 (lower is better)
Translates to: RFFLEPEGMEAHCWSGLSQPLSL*CLLGPG
Trigger: TCCGGGTCCTAGAAGGCAGCAGAGAGAGAGGGGCTG...GCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGAATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR-3UTR CCA 90 bp GTGTCCTTCTCTGTCAAGGACTTGAAAATAGCTGCTTGGGCAGGGACTCTCATCTTGAGCCAGAGGGAATaGAAGCCCACTGCTGGTCGG +
Preference number: 2 (lower is better)
Translates to: VSFSVKDLKIAAWAGTLILSQRE*KPTAGR
Trigger: CCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAA...GATGAGAGTCCCTGCCCAAGCAGCTATTTTCAAGTCCTTGACAGAGAAGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR TCA 72 bp AGCCAGAGGGAATGGAAGCCCACTGCTGGTCGGGGCTaGGCAGATCAGCCCCTCTCTCTCTGCTGCCTTCTA +
Preference number: 3 (lower is better)
Translates to: SQREWKPTAGRG*ADQPLSLCCLL
Trigger: TAGAAGGCAGCAGAGAGAGAGGGGCTGATCTGCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 72 bp AGATTCTTTCTTGAGCCAGAGGGAATGGAAGCCCACTaGTGGTCGGGGCTGAGCAGATCAGCCCCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: RFFLEPEGMEAH*WSGLSRSAPLS
Trigger: AGAGAGAGGGGCTGATCTGCTCAGCCCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGAATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR TCA 72 bp CTAGGCAAGGTCCAATGGTTCCCAGAGATTCTTTCTTaGGCCAGAGGGAATGGAAGCCCACTGCTGGTCGGG +
Preference number: 3 (lower is better)
Translates to: LGKVQWFPEILS*ARGNGSPLLVG
Trigger: CCCGACCAGCAGTGGGCTTCCATTCCCTCTGGCTCAAGAAAGAATCTCTGGGAACCATTGGACCTTGCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 72 bp GGGCAGGGACTCTCATCAGAAGGTCTGGTTAGCCACTaGTGCTCTCTCTCATCTGAGGCAGAGCAGAGTTCT +
Preference number: 3 (lower is better)
Translates to: GQGLSSEGLVSH*CSLSSEAEQSS
Trigger: AGAACTCTGCTCTGCCTCAGATGAGAGAGAGCAGCAGTGGCTAACCAGACCTTCTGATGAGAGTCCCTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 72 bp GCAGAGTTCTTCTCCGTGTGCTTAGTGTTCAGCTGGTaGAGGGTGAGAGAGCCAGAAATGGTACCACACCTG +
Preference number: 3 (lower is better)
Translates to: AEFFSVCLVFSW*RVREPEMVPHL
Trigger: CAGGTGTGGTACCATTTCTGGCTCTCTCACCCTGCACCAGCTGAACACTAAGCACACGGAGAAGAACTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR CCA 72 bp AATAGCTGCTTGGGCAGGGACTCTCATCAGAAGGTCTaGTTAGCCACTGCTGCTCTCTCTCATCTGAGGCAG +
Preference number: 3 (lower is better)
Translates to: NSCLGRDSHQKV*LATAALSHLRQ
Trigger: CTGCCTCAGATGAGAGAGAGCAGCAGTGGCTAACCAGACCTTCTGATGAGAGTCCCTGCCCAAGCAGCTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 72 bp CAGGGACTCTCATCAGAAGGTCTGGTTAGCCACTGCTaGTCTCTCTCATCTGAGGCAGAGCAGAGTTCTTCT +
Preference number: 3 (lower is better)
Translates to: QGLSSEGLVSHC*SLSSEAEQSSS
Trigger: AGAAGAACTCTGCTCTGCCTCAGATGAGAGAGAGCAGCAGTGGCTAACCAGACCTTCTGATGAGAGTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR CCA 72 bp AGAGCAGAGTTCTTCTCCGTGTGCTTAGTGTTCAGCTaGTGCAGGGTGAGAGAGCCAGAAATGGTACCACAC +
Preference number: 3 (lower is better)
Translates to: RAEFFSVCLVFS*CRVREPEMVPH
Trigger: GTGTGGTACCATTTCTGGCTCTCTCACCCTGCACCAGCTGAACACTAAGCACACGGAGAAGAACTCTGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR GCA 72 bp TTTCGTGTCCTTCTCTGTCAAGGACTTGAAAATAGCTaGTTGGGCAGGGACTCTCATCAGAAGGTCTGGTTA +
Preference number: 3 (lower is better)
Translates to: FRVLLCQGLENS*LGRDSHQKVWL
Trigger: TAACCAGACCTTCTGATGAGAGTCCCTGCCCAAGCAGCTATTTTCAAGTCCTTGACAGAGAAGGACACGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
CDS-3UTR CCA 90 bp GCAGAGTTCTTCTCCGTGTGCTTAGTGTTCAGCTGGTGCAGGGTGAGAGAGCCACAGAAGTCTTCATTCTaGATGCTCCTTGGTGGTACC +
Preference number: 4 (lower is better)
Translates to: AEFFSVCLVFSWCRVREPQKSSF*MLLGGT
Trigger: GGTACCACCAAGGAGCATCCAGAATGAAGACTTCTG...TGGCTCTCTCACCCTGCACCAGCTGAACACTAAGCACACGGAGAAGAACTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2
3UTR CAA 72 bp CGTGTCCTTCTCTGTCAAGGACTTGAAAATAGCTGCTaGGGCAGGGACTCTCATCAGAAGGTCTGGTTAGCC +
Preference number: 4 (lower is better)
Translates to: RVLLCQGLENSC*GRDSHQKVWLA
Trigger: GGCTAACCAGACCTTCTGATGAGAGTCCCTGCCCAAGCAGCTATTTTCAAGTCCTTGACAGAGAAGGACACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132961.2