Pregenerated sensors for SMIM5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048442Ensembl transcript IDs: ENSMUST00000131566.2, ENSMUST00000142089.2, ENSMUST00000152171.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCCATGTTCCTCCCCCTCAGCAGGAGGCCTGGAGTCTGATAAAGTaGACAGAGTCCCTCGCTAGCTTACTTCTCTTTGGCATAGGTCAG | + |
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Preference number: 1 (lower is better) Translates to: CHVPPPQQEAWSLIK*TESLASLLLFGIGQ Trigger: CTGACCTATGCCAAAGAGAAGTAAGCTAGCGAGGGACTCTGTGCACTTTATCAGACTCCAGGCCTCCTGCTGAGGGGGAGGAACATGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR TCA 90 bp | GCAAATCCCTTAGCTTCCTCTGGGACACTGCTTTTCCTACTTCTTTaGAGGAGACTCGCCAGCCTTCCAGCTGGCACCATGGTTGGTCTC | + |
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Preference number: 1 (lower is better) Translates to: ANPLASSGTLLFLLL*RRLASLPAGTMVGL Trigger: GAGACCAACCATGGTGCCAGCTGGAAGGCTGGCGAGTCTCCTTCAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGATTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR CCA 90 bp | AGTGTGAAACCATCAGCTCCAACAGAGCCCCGTGTCCCCGGCAGATaGGGCAACACTTGTTTCCTTGATAAGACTCCAGATGTCTGTCCT | + |
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Preference number: 1 (lower is better) Translates to: SVKPSAPTEPRVPGR*GNTCFLDKTPDVCP Trigger: AGGACAGACATCTGGAGTCTTATCAAGGAAACAAGTGTTGCCCCATCTGCCGGGGACACGGGGCTCTGTTGGAGCTGATGGTTTCACACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR CCA 90 bp | AACTTAGGCAGTGTCAGAGGATATGGCAAATCCCTTAGCTTCCTCTaGGACACTGCTTTTCCTACTTCTTTGAAGGAGACTCGCCAGCCT | + |
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Preference number: 1 (lower is better) Translates to: NLGSVRGYGKSLSFL*DTAFPTSLKETRQP Trigger: AGGCTGGCGAGTCTCCTTCAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGATTTGCCATATCCTCTGACACTGCCTAAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGGACAGAAGTGATGGCCACCCTCCTTCTAGAGACCCTCCCTCCTCCCCACTTCATGGCTGACACCTaGTGGTTTCCAGTCCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: PGTEVMATLLLETLPPPHFMADT*WFPVPS Trigger: GCTGGGGACTGGAAACCACCAGGTGTCAGCCATGAA...GTGGGGAGGAGGGAGGGTCTCTAGAAGGAGGGTGGCCATCACTTCTGTCCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCCTGAAGGACTGGAGAGGCTGAGAGGCCTGTTGTCACGCTCCACTACCTCGTTCCAGCTGGCACCATaGTTGGTCTCCCAGGTATTG | + |
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Preference number: 2 (lower is better) Translates to: TPEGLERLRGLLSRSTTSFQLAP*LVSQVL Trigger: CAATACCTGGGAGACCAACCATGGTGCCAGCTGGAA...CGAGGTAGTGGAGCGTGACAACAGGCCTCTCAGCCTCTCCAGTCCTTCAGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR-3UTR CCA 90 bp | CCATGTTCCTCCCCCTCAGCAGGAGGCCTGGAGTCTGATAAAGTGCACAGAGTCGCCATGGTAATAGCCTaGGTTACAGTCCTGGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: PCSSPSAGGLESDKVHRVAMVIA*VTVLEG Trigger: GCCTTCCAGGACTGTAACCCAGGCTATTACCATGGC...GACTCTGTGCACTTTATCAGACTCCAGGCCTCCTGCTGAGGGGGAGGAACATGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGCCAGGGACAGAAGTGATGGCCACCCTCCTTCTAGAGACCCTCCCTCCTCCTCGTGACTCTTTTTaGCTCCTTTCAGTTCATGGC | + |
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Preference number: 2 (lower is better) Translates to: ERPGTEVMATLLLETLPPPRDSF*LLSVHG Trigger: GCCATGAACTGAAAGGAGTCAAAAAGAGTCACGAGG...AGGAGGGAGGGTCTCTAGAAGGAGGGTGGCCATCACTTCTGTCCCTGGCCTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR CAA 90 bp | GGCAAATCCCTTAGCTTCCTCTGGGACACTGCTTTTCCTACTTCTTaGAAGGAGACTCGCCAGCCTTCCAGCTGGCACCATGGTTGGTCT | + |
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Preference number: 2 (lower is better) Translates to: GKSLSFLWDTAFPTS*KETRQPSSWHHGWS Trigger: AGACCAACCATGGTGCCAGCTGGAAGGCTGGCGAGTCTCCTTCAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGATTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR-3UTR CCA 90 bp | TCATGGCTGACACCTGGTGGTTTCCAGTCCCCAGCACTGCCTAGCAACTTAGGCTCCCTTAGCTTCCTCTaGGACACTGCTTTTCCTACT | + |
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Preference number: 2 (lower is better) Translates to: SWLTPGGFQSPALPSNLGSLSFL*DTAFPT Trigger: AGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGA...GCCTAAGTTGCTAGGCAGTGCTGGGGACTGGAAACCACCAGGTGTCAGCCATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR-3UTR CCA 90 bp | TTGATAAGACTCCAGATGTCTGTCCTGTCACCTGGGAAATGCCACAACTGGGGCCCTGGGTTACAGTCCTaGAAGGCTCTTGTCCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: LIRLQMSVLSPGKCHNWGPGLQS*KALVQL Trigger: AAGCTGGACAAGAGCCTTCCAGGACTGTAACCCAGG...GCCCCAGTTGTGGCATTTCCCAGGTGACAGGACAGACATCTGGAGTCTTATCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR CCA 72 bp | GAATGCTGCCATGTTCCTCCCCCTCAGCAGGAGGCCTaGAGTCTGATAAAGTGCACAGAGTCCCTCGCTAGC | + |
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Preference number: 3 (lower is better) Translates to: ECCHVPPPQQEA*SLIKCTESLAS Trigger: GCTAGCGAGGGACTCTGTGCACTTTATCAGACTCCAGGCCTCCTGCTGAGGGGGAGGAACATGGCAGCATTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR GCA 72 bp | CCTCCCCCTCAGCAGGAGGCCTGGAGTCTGATAAAGTaGACAGAGTCCCTCGCTAGCTTACTTCTCTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: PPPQQEAWSLIK*TESLASLLLFG Trigger: GCCAAAGAGAAGTAAGCTAGCGAGGGACTCTGTGCACTTTATCAGACTCCAGGCCTCCTGCTGAGGGGGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR CCA 72 bp | CAGAGCCTCAGGAGCCAGCTCCTGACAAGCATGAGCTaGTCCCTATTGAAGTGCGGGACCCTTAAAAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: QSLRSQLLTSMS*SLLKCGTLKRV Trigger: GACCCTTTTAAGGGTCCCGCACTTCAATAGGGACCAGCTCATGCTTGTCAGGAGCTGGCTCCTGAGGCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR-3UTR CAA 90 bp | GAAAGGCCAGGGACAGAAGTGATGGCCACCCTCCTTCTAGAGACCCTCCCTCCTGCTTTTCCTACTTCTTaGAAGGAGACTCGCCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: ERPGTEVMATLLLETLPPAFPTS*KETRQP Trigger: AGGCTGGCGAGTCTCCTTCAAAGAAGTAGGAAAAGC...AGGAGGGAGGGTCTCTAGAAGGAGGGTGGCCATCACTTCTGTCCCTGGCCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR CCA 72 bp | CCTACTTCTTTGAAGGAGACTCGCCAGCCTTCCAGCTaGCACCATGGTTGGTCTCCCAGGTATTGGGACACT | + |
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Preference number: 3 (lower is better) Translates to: PTSLKETRQPSS*HHGWSPRYWDT Trigger: AGTGTCCCAATACCTGGGAGACCAACCATGGTGCCAGCTGGAAGGCTGGCGAGTCTCCTTCAAAGAAGTAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR CCA 72 bp | CCATCAGCTCCAACAGAGCCCCGTGTCCCCGGCAGATaGGGCAACACTTGTTTCCTTGATAAGACTCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: PSAPTEPRVPGR*GNTCFLDKTPD Trigger: ATCTGGAGTCTTATCAAGGAAACAAGTGTTGCCCCATCTGCCGGGGACACGGGGCTCTGTTGGAGCTGATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR GCA 72 bp | CAGCTCCTGACAAGCATGAGCTGGTCCCTATTGAAGTaGGGGACCCTTAAAAGGGTCAGCTTAGCAGATGCC | + |
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Preference number: 3 (lower is better) Translates to: QLLTSMSWSLLK*GTLKRVSLADA Trigger: GGCATCTGCTAAGCTGACCCTTTTAAGGGTCCCGCACTTCAATAGGGACCAGCTCATGCTTGTCAGGAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR TCA 72 bp | TTAGCTTCCTCTGGGACACTGCTTTTCCTACTTCTTTaGAGGAGACTCGCCAGCCTTCCAGCTGGCACCATG | + |
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Preference number: 3 (lower is better) Translates to: LASSGTLLFLLL*RRLASLPAGTM Trigger: CATGGTGCCAGCTGGAAGGCTGGCGAGTCTCCTTCAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR TCA 72 bp | AGGCTGAGAGGCCTGTTGTCACGCTCCACTACCTCGTaGCTCTTTTTGACTCCTTTCAGTTCATGGCTGACA | + |
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Preference number: 3 (lower is better) Translates to: RLRGLLSRSTTS*LFLTPFSSWLT Trigger: TGTCAGCCATGAACTGAAAGGAGTCAAAAAGAGTCACGAGGTAGTGGAGCGTGACAACAGGCCTCTCAGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| 3UTR CCA 72 bp | TTCCTTGATAAGACTCCAGATGTCTGTCCTGTCACCTaGGAAATGCCACAACTGGGGCCAGGTAACCTTTGT | + |
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Preference number: 3 (lower is better) Translates to: FLDKTPDVCPVT*EMPQLGPGNLC Trigger: ACAAAGGTTACCTGGCCCCAGTTGTGGCATTTCCCAGGTGACAGGACAGACATCTGGAGTCTTATCAAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| 3UTR CCA 72 bp | AGTGTCAGAGGATATGGCAAATCCCTTAGCTTCCTCTaGGACACTGCTTTTCCTACTTCTTTGAAGGAGACT | + |
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Preference number: 3 (lower is better) Translates to: SVRGYGKSLSFL*DTAFPTSLKET Trigger: AGTCTCCTTCAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGATTTGCCATATCCTCTGACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| CDS-3UTR GCA 90 bp | GATGCCCCAGGTGGTGGTCTGAGTGTGAAACCATCAGCTCCAACAGAGCCCCGTGAGCACAGCAGCAGCTaGAGGCTATCAGCCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DAPGGGLSVKPSAPTEPREHSSS*RLSAPA Trigger: TGCTGGGGCTGATAGCCTGCAGCTGCTGCTGTGCTC...ACGGGGCTCTGTTGGAGCTGATGGTTTCACACTCAGACCACCACCTGGGGCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| CDS-3UTR GCA 90 bp | GCCCCAGGTGGTGGTCTGAGTGTGAAACCATCAGCTCCAACAGAGCCCCGTGTCGGATCTTCCGCTGTCTaGTCTCAGAGCAGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: APGGGLSVKPSAPTEPRVGSSAV*SQSSSS Trigger: ACTGCTGCTGCTCTGAGAGCAGACAGCGGAAGATCC...GACACGGGGCTCTGTTGGAGCTGATGGTTTCACACTCAGACCACCACCTGGGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| CDS-3UTR GCA 90 bp | GGGTTACAGTCCTGGAAGGCTCTTGTCCAGCTTCTCTCCAGGCAGCTCGCTGTTGCCTGGGGGAGTTGTTaGAGTTTCAGCAGCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GLQSWKALVQLLSRQLAVAWGSC*SFSSSL Trigger: GAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGC...AACAGCGAGCTGCCTGGAGAGAAGCTGGACAAGAGCCTTCCAGGACTGTAACCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| CDS-3UTR GCA 90 bp | TTACAGTCCTGGAAGGCTCTTGTCCAGCTTCTCTCCAGGCAGCTCGCTGTTGTCGAGCACAGCAGCAGCTaGAGGCTATCAGCCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LQSWKALVQLLSRQLAVVEHSSS*RLSAPA Trigger: TGCTGGGGCTGATAGCCTGCAGCTGCTGCTGTGCTC...GACAACAGCGAGCTGCCTGGAGAGAAGCTGGACAAGAGCCTTCCAGGACTGTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| 3UTR CAA 72 bp | CCCGTGTCCCCGGCAGATGGGGCAACACTTGTTTCCTaGATAAGACTCCAGATGTCTGTCCTGTCACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: PVSPADGATLVS*IRLQMSVLSPG Trigger: CCCAGGTGACAGGACAGACATCTGGAGTCTTATCAAGGAAACAAGTGTTGCCCCATCTGCCGGGGACACGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| CDS-3UTR GCA 90 bp | AATAGCCTGGGTTACAGTCCTGGAAGGCTCTTGTCCAGCTTCTCTCCAGGCAGCGGATCTTCCGCTGTCTaGTCTCAGAGCAGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: NSLGYSPGRLLSSFSPGSGSSAV*SQSSSS Trigger: ACTGCTGCTGCTCTGAGAGCAGACAGCGGAAGATCC...GCTGCCTGGAGAGAAGCTGGACAAGAGCCTTCCAGGACTGTAACCCAGGCTATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| 3UTR CAA 72 bp | CATGGTAATAGCCTGGGTTACAGTCCTGGAAGGCTCTaGTCCAGCTTCTCTCCAGGCAGCTCGCTGTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: HGNSLGYSPGRL*SSFSPGSSLLS Trigger: GGACAACAGCGAGCTGCCTGGAGAGAAGCTGGACAAGAGCCTTCCAGGACTGTAACCCAGGCTATTACCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| 3UTR CAA 72 bp | AGGAGCCAGCTCCTGACAAGCATGAGCTGGTCCCTATaGAAGTGCGGGACCCTTAAAAGGGTCAGCTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: RSQLLTSMSWSL*KCGTLKRVSLA Trigger: TGCTAAGCTGACCCTTTTAAGGGTCCCGCACTTCAATAGGGACCAGCTCATGCTTGTCAGGAGCTGGCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| CDS-3UTR GCA 90 bp | GGCAGATGGGGCAACACTTGTTTCCTTGATAAGACTCCAGATGTCTGTCCTGTCGCCTGGGGGAGTTGTTaGAGTTTCAGCAGCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GRWGNTCFLDKTPDVCPVAWGSC*SFSSSL Trigger: GAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGC...GACAGGACAGACATCTGGAGTCTTATCAAGGAAACAAGTGTTGCCCCATCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152171.8 |
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| CDS-3UTR GCA 90 bp | AGTGTCAGAGGATATGGCAAATCCCTTAGCTTCCTCTGGGACACTGCTTTTCCTGCCTGGGGGAGTTGTTaGAGTTTCAGCAGCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SVRGYGKSLSFLWDTAFPAWGSC*SFSSSL Trigger: GAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGC...AGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGATTTGCCATATCCTCTGACACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| CDS GCA 90 bp | ATGGAGAAAGCCACGAGCTCCACGGGCTCCGCCTGGGGGAGTTGTTaGAGTTTCAGCAGCAGCCTCTCTCCCACAGAGCGAATCTCCCCC | + |
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Preference number: 5 (lower is better) Translates to: MEKATSSTGSAWGSC*SFSSSLSPTERISP Trigger: GGGGGAGATTCGCTCTGTGGGAGAGAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCGGAGCCCGTGGAGCTCGTGGCTTTCTCCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000131566.2 ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| CDS-3UTR CAA 90 bp | TACAGTCCTGGAAGGCTCTTGTCCAGCTTCTCTCCAGGCAGCTCGCTGTTGTCCCGCCTGGGGGAGTTGTaGCAGTTTCAGCAGCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: YSPGRLLSSFSPGSSLLSRLGEL*QFQQQP Trigger: AGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCG...GGACAACAGCGAGCTGCCTGGAGAGAAGCTGGACAAGAGCCTTCCAGGACTGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| CDS-3UTR CAA 90 bp | AAGAGTAAAGTGGCCATGGTAATAGCCTGGGTTACAGTCCTGGAAGGCTCTTGTCGCCTGGGGGAGTTGTaGCAGTTTCAGCAGCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: KSKVAMVIAWVTVLEGSCRLGEL*QFQQQP Trigger: AGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCG...ACAAGAGCCTTCCAGGACTGTAACCCAGGCTATTACCATGGCCACTTTACTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| CDS-3UTR CAA 90 bp | GGATATGGCAAATCCCTTAGCTTCCTCTGGGACACTGCTTTTCCTACTTCTTTGCGCCTGGGGGAGTTGTaGCAGTTTCAGCAGCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: GYGKSLSFLWDTAFPTSLRLGEL*QFQQQP Trigger: AGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCG...CAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAAGCTAAGGGATTTGCCATATCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| CDS-3UTR CAA 90 bp | TTCCTCTGGGACACTGCTTTTCCTACTTCTTTGAAGGAGACTCGCCAGCCTTCCGGACAGATGCCCCACTaGCCTGTGAAAAGAACAATG | + |
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Preference number: 5 (lower is better) Translates to: FLWDTAFPTSLKETRQPSGQMPH*PVKRTM Trigger: CATTGTTCTTTTCACAGGCAAGTGGGGCATCTGTCC...GGAAGGCTGGCGAGTCTCCTTCAAAGAAGTAGGAAAAGCAGTGTCCCAGAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000131566.2 |
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| CDS GCA 72 bp | GCCACGAGCTCCACGGGCTCCGCCTGGGGGAGTTGTTaGAGTTTCAGCAGCAGCCTCTCTCCCACAGAGCGA | + |
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Preference number: 6 (lower is better) Translates to: ATSSTGSAWGSC*SFSSSLSPTER Trigger: TCGCTCTGTGGGAGAGAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCGGAGCCCGTGGAGCTCGTGGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000131566.2 ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| CDS CAA 90 bp | GATGGAGAAAGCCACGAGCTCCACGGGCTCCGCCTGGGGGAGTTGTaGCAGTTTCAGCAGCAGCCTCTCTCCCACAGAGCGAATCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: DGESHELHGLRLGEL*QFQQQPLSHRANLP Trigger: GGGGAGATTCGCTCTGTGGGAGAGAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCGGAGCCCGTGGAGCTCGTGGCTTTCTCCATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000131566.2 ENSMUST00000142089.2 ENSMUST00000152171.8 |
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| CDS CCA 72 bp | ATGATGGAGAAAGCCACGAGCTCCACGGGCTCCGCCTaGGGGAGTTGTTGCAGTTTCAGCAGCAGCCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: MMEKATSSTGSA*GSCCSFSSSLS Trigger: AGAGAGGCTGCTGCTGAAACTGCAACAACTCCCCCAGGCGGAGCCCGTGGAGCTCGTGGCTTTCTCCATCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000131566.2 ENSMUST00000142089.2 ENSMUST00000152171.8 |
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