Pregenerated sensors for SMIM43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000085007Ensembl transcript IDs: ENSMUST00000124606.3
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGGGAAGTGTTTCTTCTCCCTCGGCTTGGCCAGTACGTAGGCTGTaGGTAGAAGCAGCTCGAGAGGCAATCTCCCGGGATATTCCTGGA | + |
|
Preference number: 1 (lower is better) Translates to: VGSVSSPSAWPVRRL*VEAAREAISRDIPG Trigger: TCCAGGAATATCCCGGGAGATTGCCTCTCGAGCTGCTTCTACTCACAGCCTACGTACTGGCCAAGCCGAGGGAGAAGAAACACTTCCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 90 bp | CTCAGCCACATCGGTGGGGCTGTGTGGGAACCAGGAGTTCCATCTTaGACACTGCTTTCTGCACAACTGTGCTTTGTACTAGAGCATAGA | + |
|
Preference number: 1 (lower is better) Translates to: LSHIGGAVWEPGVPS*TLLSAQLCFVLEHR Trigger: TCTATGCTCTAGTACAAAGCACAGTTGTGCAGAAAGCAGTGTTCAAGATGGAACTCCTGGTTCCCACACAGCCCCACCGATGTGGCTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 90 bp | CACACACACACACACACACACACACACACACACACGAGAATGGTGTaGACTGTACATACAATAGCCACTAGCCCCAAGTGGCTGTCTCGG | + |
|
Preference number: 1 (lower is better) Translates to: HTHTHTHTHTHTRMV*TVHTIATSPKWLSR Trigger: CCGAGACAGCCACTTGGGGCTAGTGGCTATTGTATGTACAGTTCACACCATTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CCA 90 bp | GAACAGTTTCATATCACAGAAAGTTCTTTTGCACAGCTCTGGGTGTaGGAAGTGTTTCTTCTCCCTCGGCTTGGCCAGTACGTAGGCTGT | + |
|
Preference number: 1 (lower is better) Translates to: EQFHITESSFAQLWV*EVFLLPRLGQYVGC Trigger: ACAGCCTACGTACTGGCCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAAAAGAACTTTCTGTGATATGAAACTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR GCA 90 bp | TTAGAAGGAAGATGGACTCAGACAGGCACATTCTGTTTTCTTCCCTaGTTCCTCCTTCTATTGGGGAGCCACGGAGATCACATAAGAATC | + |
|
Preference number: 1 (lower is better) Translates to: LEGRWTQTGTFCFLP*FLLLLGSHGDHIRI Trigger: GATTCTTATGTGATCTCCGTGGCTCCCCAATAGAAGGAGGAAGCAGGGAAGAAAACAGAATGTGCCTGTCTGAGTCCATCTTCCTTCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CCA 90 bp | TGCCTAGGACAATGTGACCTTGGTCAGGGGCAAGGACTGGGAATATaGAGATGTAGTGAATCAACACTTCCATTTTTACCATGGTCAATT | + |
|
Preference number: 1 (lower is better) Translates to: CLGQCDLGQGQGLGI*RCSESTLPFLPWSI Trigger: AATTGACCATGGTAAAAATGGAAGTGTTGATTCACTACATCTCCATATTCCCAGTCCTTGCCCCTGACCAAGGTCACATTGTCCTAGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CCA 90 bp | CTGGGAATATGGAGATGTAGTGAATCAACACTTCCATTTTTACCATaGTCAATTATCACTGAAACCTATCTCATTTGGTACAAGAAGACA | + |
|
Preference number: 1 (lower is better) Translates to: LGIWRCSESTLPFLP*SIITETYLIWYKKT Trigger: TGTCTTCTTGTACCAAATGAGATAGGTTTCAGTGATAATTGACCATGGTAAAAATGGAAGTGTTGATTCACTACATCTCCATATTCCCAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | GAGGCAATCTCCCGGGATATTCCTGGATCGAGGGTGGAAGGAAGAGAGGTAGCCTACAGGGGAGTCAGCTaGCCAGAGAGGAAGCCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: EAISRDIPGSRVEGREVAYRGVS*PERKPV Trigger: GACTGGCTTCCTCTCTGGTCAGCTGACTCCCCTGTA...GGCTACCTCTCTTCCTTCCACCCTCGATCCAGGAATATCCCGGGAGATTGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CCA 90 bp | TATGGAAGAAGGCAGAGCAGAATCCCGTTTGGTAGCCAGGGTGAGGGCAGAGTAGCTCAGCCACATCGGTaGGGCTGTGTGGGAACCAGG | + |
|
Preference number: 2 (lower is better) Translates to: YGRRQSRIPFGSQGEGRVAQPHR*GCVGTR Trigger: CCTGGTTCCCACACAGCCCCACCGATGTGGCTGAGC...TACTCTGCCCTCACCCTGGCTACCAAACGGGATTCTGCTCTGCCTTCTTCCATA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CAA 90 bp | GGGAGTCAGCTGACCAGAGAGGAAGCCAGTCCTGACAAATATTTCTaGAGAACTAGGGAGACATCGTCACTCTGCTCAGCCACATCGGTG | + |
|
Preference number: 2 (lower is better) Translates to: GSQLTREEASPDKYF*RTRETSSLCSATSV Trigger: CACCGATGTGGCTGAGCAGAGTGACGATGTCTCCCTAGTTCTCAAGAAATATTTGTCAGGACTGGCTTCCTCTCTGGTCAGCTGACTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | AAGTTCTTTTGCACAGCTCTGGGTGTGGGAAGTGTTTCTTCTCCCTCGGCTTGGTCCGTGAGGAGATTATaGAGACCCCCTCAACCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: KFFCTALGVGSVSSPSAWSVRRL*RPPQPP Trigger: TGGAGGTTGAGGGGGTCTTCATAATCTCCTCACGGA...CCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAAAAGAACTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CCA 90 bp | TATGGAAGAAGGCAGAGCAGAATCCCGTTTGGTAGCCAGGGTGAGGGCAGAGTAGTCAGGGGCAAGGACTaGGAATATGGAGATGTAGTG | + |
|
Preference number: 2 (lower is better) Translates to: YGRRQSRIPFGSQGEGRVVRGKD*EYGDVV Trigger: CACTACATCTCCATATTCCCAGTCCTTGCCCCTGAC...TACTCTGCCCTCACCCTGGCTACCAAACGGGATTCTGCTCTGCCTTCTTCCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CAA 90 bp | AGACCATGGGATGTGGAGTTCATGGCTAGCAGCCACCTCCCCTCTTaGACTCTAATACACACACACACACACACACACACACACACACAC | + |
|
Preference number: 2 (lower is better) Translates to: RPWDVEFMASSHLPS*TLIHTHTHTHTHTH Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAGAGTCAAAGAGGGGAGGTGGCTGCTAGCCATGAACTCCACATCCCATGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | GAGGCAATCTCCCGGGATATTCCTGGATCGAGGGTGGAAGGAAGAGAGGTAGCCAGAGGAAGCCAGTCCTaGCAAATATTTCTTGAGAAC | + |
|
Preference number: 2 (lower is better) Translates to: EAISRDIPGSRVEGREVARGSQS*QIFLEN Trigger: GTTCTCAAGAAATATTTGTCAGGACTGGCTTCCTCT...GGCTACCTCTCTTCCTTCCACCCTCGATCCAGGAATATCCCGGGAGATTGCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CCA 90 bp | TTGCACAGCTCTGGGTGTGGGAAGTGTTTCTTCTCCCTCGGCTTGGCCAGTACGTCTTTAGAAGGAAGATaGACTCAGACAGGCACATTC | + |
|
Preference number: 2 (lower is better) Translates to: LHSSGCGKCFFSLGLASTSLEGR*TQTGTF Trigger: GAATGTGCCTGTCTGAGTCCATCTTCCTTCTAAAGA...CGTACTGGCCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | TTGCACAGCTCTGGGTGTGGGAAGTGTTTCTTCTCCCTCGGCTTGGCCAGTACGCTGACAAATATTTCTTaGGAACTAGGGAGACATCGT | + |
|
Preference number: 2 (lower is better) Translates to: LHSSGCGKCFFSLGLASTLTNIS*ELGRHR Trigger: ACGATGTCTCCCTAGTTCTCAAGAAATATTTGTCAG...CGTACTGGCCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | AAGTTCTTTTGCACAGCTCTGGGTGTGGGAAGTGTTTCTTCTCCCTCGGCTTGGGTTACCAAAGTTCCGTaGGGAGATTATGAAGACCCC | + |
|
Preference number: 2 (lower is better) Translates to: KFFCTALGVGSVSSPSAWVTKVP*GDYEDP Trigger: GGGGTCTTCATAATCTCCTCACGGAACTTTGGTAAC...CCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAAAAGAACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | AACAATGAAGACCATGGGATGTGGAGTTCATGGCTAGCAGCCACCTCCCCTCTTAGCTGCCACCAAAATTaGACTAACTGGAACGTGATG | + |
|
Preference number: 2 (lower is better) Translates to: NNEDHGMWSSWLAATSPLSCHQN*TNWNVM Trigger: CATCACGTTCCAGTTAGTTCAATTTTGGTGGCAGCT...AAGAGGGGAGGTGGCTGCTAGCCATGAACTCCACATCCCATGGTCTTCATTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR GCA 90 bp | GTGGGGCTGTGTGGGAACCAGGAGTTCCATCTTGAACACTGCTTTCTGCACAACCACATAAGAATCTTTTaGAAGATCTCCTCCACTCCC | + |
|
Preference number: 2 (lower is better) Translates to: VGLCGNQEFHLEHCFLHNHIRIF*KISSTP Trigger: GGGAGTGGAGGAGATCTTGCAAAAGATTCTTATGTG...GTTGTGCAGAAAGCAGTGTTCAAGATGGAACTCCTGGTTCCCACACAGCCCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR TCA 90 bp | AAGTGCCTAGGACAATGTGACCTTGGTCAGGGGCAAGGACTGGGAATATGGAGAAAGCAAGAAAAACAATaGAGACCATGGGATGTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: KCLGQCDLGQGQGLGIWRKQEKQ*RPWDVE Trigger: CTCCACATCCCATGGTCTTCATTGTTTTTCTTGCTT...TCTCCATATTCCCAGTCCTTGCCCCTGACCAAGGTCACATTGTCCTAGGCACTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR GCA 90 bp | AGAGGTAGCCTTTCTGAGCAGAGTGTCTTTCCTTGTGCATGGAAGGGATGGCCTTTCCATCTTGAACACTaGTTTCTGCACAACTGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: RGSLSEQSVFPCAWKGWPFHLEH*FLHNCA Trigger: AGCACAGTTGTGCAGAAAGCAGTGTTCAAGATGGAA...AGGCCATCCCTTCCATGCACAAGGAAAGACACTCTGCTCAGAAAGGCTACCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CCA 90 bp | TATGGAAGAAGGCAGAGCAGAATCCCGTTTGGTAGCCAGGGTGAGGGCAGAGTACAAGGACTGGGAATATaGAGATGTAGTGAATCAACA | + |
|
Preference number: 2 (lower is better) Translates to: YGRRQSRIPFGSQGEGRVQGLGI*RCSEST Trigger: TGTTGATTCACTACATCTCCATATTCCCAGTCCTTG...TACTCTGCCCTCACCCTGGCTACCAAACGGGATTCTGCTCTGCCTTCTTCCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 72 bp | GTTTCTTCTCCCTCGGCTTGGCCAGTACGTAGGCTGTaGGTAGAAGCAGCTCGAGAGGCAATCTCCCGGGAT | + |
|
Preference number: 3 (lower is better) Translates to: VSSPSAWPVRRL*VEAAREAISRD Trigger: ATCCCGGGAGATTGCCTCTCGAGCTGCTTCTACTCACAGCCTACGTACTGGCCAAGCCGAGGGAGAAGAAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CCA 72 bp | CTAGGGAGACATCGTCACTCTGCTCAGCCACATCGGTaGGGCTGTGTGGGAACCAGGAGTTCCATCTTGAAC | + |
|
Preference number: 3 (lower is better) Translates to: LGRHRHSAQPHR*GCVGTRSSILN Trigger: GTTCAAGATGGAACTCCTGGTTCCCACACAGCCCCACCGATGTGGCTGAGCAGAGTGACGATGTCTCCCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CAA 90 bp | GAGGCAATCTCCCGGGATATTCCTGGATCGAGGGTGGAAGGAAGAGAGGTAGCCATAGACTTCTGGATCTaGTCCACCCAGGATTCTTTG | + |
|
Preference number: 3 (lower is better) Translates to: EAISRDIPGSRVEGREVAIDFWI*STQDSL Trigger: CAAAGAATCCTGGGTGGACAAGATCCAGAAGTCTAT...GGCTACCTCTCTTCCTTCCACCCTCGATCCAGGAATATCCCGGGAGATTGCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CAA 90 bp | AAGTGCCTAGGACAATGTGACCTTGGTCAGGGGCAAGGACTGGGAATATGGAGAGCAACAGCATCCATATaGTTAAAAGACAGTGGCCCG | + |
|
Preference number: 3 (lower is better) Translates to: KCLGQCDLGQGQGLGIWRATASI*LKDSGP Trigger: CGGGCCACTGTCTTTTAACAATATGGATGCTGTTGC...TCTCCATATTCCCAGTCCTTGCCCCTGACCAAGGTCACATTGTCCTAGGCACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CCA 72 bp | CATATCACAGAAAGTTCTTTTGCACAGCTCTGGGTGTaGGAAGTGTTTCTTCTCCCTCGGCTTGGCCAGTAC | + |
|
Preference number: 3 (lower is better) Translates to: HITESSFAQLWV*EVFLLPRLGQY Trigger: GTACTGGCCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAAAAGAACTTTCTGTGATATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CAA 90 bp | TTGCACAGCTCTGGGTGTGGGAAGTGTTTCTTCTCCCTCGGCTTGGCCAGTACGAGAAAACAACCTATGTaGATCTGTTACCAAAGTTCC | + |
|
Preference number: 3 (lower is better) Translates to: LHSSGCGKCFFSLGLASTRKQPM*ICYQSS Trigger: GGAACTTTGGTAACAGATCAACATAGGTTGTTTTCT...CGTACTGGCCAAGCCGAGGGAGAAGAAACACTTCCCACACCCAGAGCTGTGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 72 bp | ATGTTGATCTGTTACCAAAGTTCCGTGAGGAGATTATaGAGACCCCCTCAACCTCCAGATCCCCCAACACAC | + |
|
Preference number: 3 (lower is better) Translates to: MLICYQSSVRRL*RPPQPPDPPTH Trigger: GTGTGTTGGGGGATCTGGAGGTTGAGGGGGTCTTCATAATCTCCTCACGGAACTTTGGTAACAGATCAACAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 72 bp | ACACACACACACACACACACACACACGAGAATGGTGTaGACTGTACATACAATAGCCACTAGCCCCAAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: THTHTHTHTRMV*TVHTIATSPKW Trigger: CCACTTGGGGCTAGTGGCTATTGTATGTACAGTTCACACCATTCTCGTGTGTGTGTGTGTGTGTGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 72 bp | AGAGAACTAAAATGGAATAAAGTGCCTAGGACAATGTaGCCTTGGTCAGGGGCAAGGACTGGGAATATGGAG | + |
|
Preference number: 3 (lower is better) Translates to: RELKWNKVPRTM*PWSGARTGNME Trigger: CTCCATATTCCCAGTCCTTGCCCCTGACCAAGGTCACATTGTCCTAGGCACTTTATTCCATTTTAGTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR-3UTR CAA 90 bp | GGAACCAGGAGTTCCATCTTGAACACTGCTTTCTGCACAACTGTGCTTTGTACTTCACATAAGAATCTTTaGCAAGATCTCCTCCACTCC | + |
|
Preference number: 3 (lower is better) Translates to: GTRSSILNTAFCTTVLCTSHKNL*QDLLHS Trigger: GGAGTGGAGGAGATCTTGCAAAAGATTCTTATGTGA...AGTACAAAGCACAGTTGTGCAGAAAGCAGTGTTCAAGATGGAACTCCTGGTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 72 bp | GTAGATGGTAGCATTCTCAATTTAGAGCTAACATACTaGCTTTCTTTTTCATCAAGGAGAAAAACTGAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: VDGSILNLELTY*LSFSSRRKTES Trigger: GCTTTCAGTTTTTCTCCTTGATGAAAAAGAAAGTCAGTATGTTAGCTCTAAATTGAGAATGCTACCATCTAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR TCA 72 bp | ATCAACACTTCCATTTTTACCATGGTCAATTATCACTaGAACCTATCTCATTTGGTACAAGAAGACATGCAA | + |
|
Preference number: 3 (lower is better) Translates to: INTSIFTMVNYH*NLSHLVQEDMQ Trigger: TTGCATGTCTTCTTGTACCAAATGAGATAGGTTTCAGTGATAATTGACCATGGTAAAAATGGAAGTGTTGAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS-3UTR CCA 90 bp | GTGGGGCTGTGTGGGAACCAGGAGTTCCATCTTGAACACTGCTTTCTGCACAACGGGTCCCGGCCGTATTaGCCACCGAGTTCTTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: VGLCGNQEFHLEHCFLHNGSRPY*PPSSSA Trigger: AGCTGAAGAACTCGGTGGCCAATACGGCCGGGACCC...GTTGTGCAGAAAGCAGTGTTCAAGATGGAACTCCTGGTTCCCACACAGCCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS-3UTR GCA 90 bp | GTACTAGAGCATAGACTTCTGGATCTTGTCCACCCAGGATTCTTTGTCCTAATCGACAGGCGCCCGGGTTaGAGGGTCCCGGCCGTATTG | + |
|
Preference number: 4 (lower is better) Translates to: VLEHRLLDLVHPGFFVLIDRRPG*RVPAVL Trigger: CAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTC...GATTAGGACAAAGAATCCTGGGTGGACAAGATCCAGAAGTCTATGCTCTAGTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS-3UTR GCA 90 bp | AAGTGCCTAGGACAATGTGACCTTGGTCAGGGGCAAGGACTGGGAATATGGAGAACCGAGTTCTTCAGCTaGTTGATGACCACGAAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: KCLGQCDLGQGQGLGIWRTEFFS*LMTTKS Trigger: GCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCGGT...TCTCCATATTCCCAGTCCTTGCCCCTGACCAAGGTCACATTGTCCTAGGCACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| 3UTR CAA 72 bp | CTGACCAGAGAGGAAGCCAGTCCTGACAAATATTTCTaGAGAACTAGGGAGACATCGTCACTCTGCTCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: LTREEASPDKYF*RTRETSSLCSA Trigger: GGCTGAGCAGAGTGACGATGTCTCCCTAGTTCTCAAGAAATATTTGTCAGGACTGGCTTCCTCTCTGGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS GCA 90 bp | TTATTGAAACCCCACGGCTCCCGGTGCAGGGACAGGCGCCCGGGTTaGAGGGTCCCGGCCGTATTGGCCACCGAGTTCTTCAGCTGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LLKPHGSRCRDRRPG*RVPAVLATEFFSCL Trigger: CAAGCAGCTGAAGAACTCGGTGGCCAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTCCCTGCACCGGGAGCCGTGGGGTTTCAATAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS-3UTR CAA 90 bp | GTGGGGCTGTGTGGGAACCAGGAGTTCCATCTTGAACACTGCTTTCTGCACAACAGGGTCCCGGCCGTATaGGCCACCGAGTTCTTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VGLCGNQEFHLEHCFLHNRVPAV*ATEFFS Trigger: GCTGAAGAACTCGGTGGCCAATACGGCCGGGACCCT...GTTGTGCAGAAAGCAGTGTTCAAGATGGAACTCCTGGTTCCCACACAGCCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS-3UTR CAA 90 bp | TATGGAAGAAGGCAGAGCAGAATCCCGTTTGGTAGCCAGGGTGAGGGCAGAGTAGAGTTCTTCAGCTGCTaGATGACCACGAAGAGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: YGRRQSRIPFGSQGEGRVEFFSC*MTTKSR Trigger: CCTGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTC...TACTCTGCCCTCACCCTGGCTACCAAACGGGATTCTGCTCTGCCTTCTTCCATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS GCA 72 bp | CCCCACGGCTCCCGGTGCAGGGACAGGCGCCCGGGTTaGAGGGTCCCGGCCGTATTGGCCACCGAGTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: PHGSRCRDRRPG*RVPAVLATEFF Trigger: GAAGAACTCGGTGGCCAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTCCCTGCACCGGGAGCCGTGGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS CAA 72 bp | ACCCCACGGCTCCCGGTGCAGGGACAGGCGCCCGGGTaGCAGGGTCCCGGCCGTATTGGCCACCGAGTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: TPRLPVQGQAPG*QGPGRIGHRVL Trigger: AAGAACTCGGTGGCCAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTCCCTGCACCGGGAGCCGTGGGGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS GCA 72 bp | ACAGCTTGCTCGTTATTGAAACCCCACGGCTCCCGGTaGAGGGACAGGCGCCCGGGTTGCAGGGTCCCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: TACSLLKPHGSR*RDRRPGCRVPA Trigger: GGCCGGGACCCTGCAACCCGGGCGCCTGTCCCTGCACCGGGAGCCGTGGGGTTTCAATAACGAGCAAGCTGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS CAA 90 bp | TCCCGGTGCAGGGACAGGCGCCCGGGTTGCAGGGTCCCGGCCGTATaGGCCACCGAGTTCTTCAGCTGCTTGATGACCACGAAGAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SRCRDRRPGCRVPAV*ATEFFSCLMTTKSR Trigger: CCTGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCGGTGGCCAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTCCCTGCACCGGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS CAA 72 bp | AGGGACAGGCGCCCGGGTTGCAGGGTCCCGGCCGTATaGGCCACCGAGTTCTTCAGCTGCTTGATGACCACG | + |
|
Preference number: 6 (lower is better) Translates to: RDRRPGCRVPAV*ATEFFSCLMTT Trigger: CGTGGTCATCAAGCAGCTGAAGAACTCGGTGGCCAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTCCCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS CAA 90 bp | GTTATTGAAACCCCACGGCTCCCGGTGCAGGGACAGGCGCCCGGGTaGCAGGGTCCCGGCCGTATTGGCCACCGAGTTCTTCAGCTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: VIETPRLPVQGQAPG*QGPGRIGHRVLQLL Trigger: AAGCAGCTGAAGAACTCGGTGGCCAATACGGCCGGGACCCTGCAACCCGGGCGCCTGTCCCTGCACCGGGAGCCGTGGGGTTTCAATAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||
| CDS GCA 72 bp | AGGGTCCCGGCCGTATTGGCCACCGAGTTCTTCAGCTaGTTGATGACCACGAAGAGCAGGAGGAACAGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RVPAVLATEFFS*LMTTKSRRNRR Trigger: CCTCCTGTTCCTCCTGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCGGTGGCCAATACGGCCGGGACCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124606.3 |
||