Pregenerated sensors for SMIM41 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075408Ensembl transcript IDs: ENSMUST00000071328.7, ENSMUST00000191426.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACCGGTCCGGTGTCTTCAGTCCATCACCACAAGCACAAATAGGGTaGGGGTGGGCGGCAGGCGAGGGGAGATGTCCAGCACCTGTGCGG | + |
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Preference number: 1 (lower is better) Translates to: HRSGVFSPSPQAQIG*GWAAGEGRCPAPVR Trigger: CCGCACAGGTGCTGGACATCTCCCCTCGCCTGCCGCCCACCCGCACCCTATTTGTGCTTGTGGTGATGGACTGAAGACACCGGACCGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR CCA 90 bp | TCCACAGAGCTTGGTGTGCAGAGGGCACACTCGTGTGCACGCCGTTaGGGTGTAAAGCCAGTGCCCATGGCACAGGGCAGTCACCAAGCA | + |
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Preference number: 1 (lower is better) Translates to: STELGVQRAHSCARR*GVKPVPMAQGSHQA Trigger: TGCTTGGTGACTGCCCTGTGCCATGGGCACTGGCTTTACACCCCAACGGCGTGCACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CCA 90 bp | TACCGCATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTaGTGTGCAGAGGGCACACTCGTGTGCACGCCGTTGGGGTGTAAA | + |
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Preference number: 1 (lower is better) Translates to: YRIRQDRSCTRVHRA*CAEGTLVCTPLGCK Trigger: TTTACACCCCAACGGCGTGCACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGATGCGGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR GCA 90 bp | GCACCTGTGCGGGAAATAAGAGCTTGTGGGTTGGACCTTCCGCTGTaGCTCACAGAAATGAACTCTGGATGGCGTGGCACAGAACAGGCT | + |
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Preference number: 1 (lower is better) Translates to: APVREIRACGLDLPL*LTEMNSGWRGTEQA Trigger: AGCCTGTTCTGTGCCACGCCATCCAGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR CCA 90 bp | AGGCGAGGGGAGATGTCCAGCACCTGTGCGGGAAATAAGAGCTTGTaGGTTGGACCTTCCGCTGTGCCTCACAGAAATGAACTCTGGATG | + |
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Preference number: 1 (lower is better) Translates to: RRGEMSSTCAGNKSL*VGPSAVPHRNELWM Trigger: CATCCAGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGCTGGACATCTCCCCTCGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR CAA 90 bp | GTCCACAGAGCTTGGTGTGCAGAGGGCACACTCGTGTGCACGCCGTaGGGGTGTAAAGCCAGTGCCCATGGCACAGGGCAGTCACCAAGC | + |
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Preference number: 2 (lower is better) Translates to: VHRAWCAEGTLVCTP*GCKASAHGTGQSPS Trigger: GCTTGGTGACTGCCCTGTGCCATGGGCACTGGCTTTACACCCCAACGGCGTGCACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CAA 90 bp | GGCAGGCGAGGGGAGATGTCCAGCACCTGTGCGGGAAATAAGAGCTaGTGGGTTGGACCTTCCGCTGTGCCTCACAGAAATGAACTCTGG | + |
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Preference number: 2 (lower is better) Translates to: GRRGEMSSTCAGNKS*WVGPSAVPHRNELW Trigger: CCAGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGCTGGACATCTCCCCTCGCCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCAGTGCCCATGGCACAGGGCAGTCACCAAGCAGACTCACTTGTTCTTGTCAAGCACAAATAGGGTaGGGGTGGGCGGCAGGCGAG | + |
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Preference number: 2 (lower is better) Translates to: KASAHGTGQSPSRLTCSCQAQIG*GWAAGE Trigger: CTCGCCTGCCGCCCACCCGCACCCTATTTGTGCTTG...ACAAGAACAAGTGAGTCTGCTTGGTGACTGCCCTGTGCCATGGGCACTGGCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGGGTCAAGGGCTGGAAACAGACCACACACTCAGAACTGCGTTCCTGGCCTACCACAGAGCTTGGTGTaGAGAGGGCACACTCGTGTG | + |
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Preference number: 2 (lower is better) Translates to: QGSRAGNRPHTQNCVPGLPQSLV*RGHTRV Trigger: CACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGG...TAGGCCAGGAACGCAGTTCTGAGTGTGTGGTCTGTTTCCAGCCCTTGACCCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CAA 90 bp | GAGGGGAGATGTCCAGCACCTGTGCGGGAAATAAGAGCTTGTGGGTaGGACCTTCCGCTGTGCCTCACAGAAATGAACTCTGGATGGCGT | + |
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Preference number: 2 (lower is better) Translates to: EGRCPAPVREIRACG*DLPLCLTEMNSGWR Trigger: ACGCCATCCAGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGCTGGACATCTCCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAGGGGAGATGAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACCCACAGAGCTTGGTGTaGAGAGGGCACACTCGTGTG | + |
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Preference number: 2 (lower is better) Translates to: LRGDEEGNQESQGSRAGNPQSLV*RGHTRV Trigger: CACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGG...GTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCATCTCCCCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR GCA 90 bp | CAGATACCGCATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTTGGACCTTCCGCTGTaGCTCACAGAAATGAACTCT | + |
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Preference number: 2 (lower is better) Translates to: QIPHQARQELHSCPQSLVLDLPL*LTEMNS Trigger: AGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAA...CACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGATGCGGTATCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR CCA 90 bp | AACTCAGAACCTCTGGAAGAACAGTCAGTGTTCGTAACTACCCAGCCACCTCTCCGTGTCCACAGAGCTTaGTGTGCAGAGGGCACACTC | + |
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Preference number: 2 (lower is better) Translates to: NSEPLEEQSVFVTTQPPLRVHRA*CAEGTL Trigger: GAGTGTGCCCTCTGCACACCAAGCTCTGTGGACACG...GAGAGGTGGCTGGGTAGTTACGAACACTGACTGTTCTTCCAGAGGTTCTGAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGGGTCAAGGGCTGGAAACAGACCACACACTCAGAACTGCGTTCCTGGCCTAGAAATGAACTCTGGATaGCGTGGCACAGAACAGGCT | + |
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Preference number: 2 (lower is better) Translates to: QGSRAGNRPHTQNCVPGLEMNSG*RGTEQA Trigger: AGCCTGTTCTGTGCCACGCCATCCAGAGTTCATTTC...TAGGCCAGGAACGCAGTTCTGAGTGTGTGGTCTGTTTCCAGCCCTTGACCCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGACCACACACTCATGTGCCTCACAGAAATaGACTCTGGATGGCGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: GRKPRIPRVKGWKQTTHSCASQK*TLDGVA Trigger: TGCCACGCCATCCAGAGTTCATTTCTGTGAGGCACA...TGAGTGTGTGGTCTGTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR TCA 90 bp | TTGAGGGGAGATGAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGAAGCAGGCCAAATTaGGGGGAGATGAGGAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: LRGDEEGNQESQGSRAGNRSRPN*GEMRKE Trigger: TTCCTTCCTCATCTCCCCTCAATTTGGCCTGCTTCT...GTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCATCTCCCCTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CCA 90 bp | ATGAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGACCACACAACAGCGATAGGGCACTaGGTTGTCAGATACCGCATC | + |
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Preference number: 2 (lower is better) Translates to: MRKETKNPKGQGLETDHTTAIGH*VVRYRI Trigger: GATGCGGTATCTGACAACCCAGTGCCCTATCGCTGT...TGTGTGGTCTGTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CCA 90 bp | AAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGACCACACACTCAGAACTGACAGCGATAGGGCACTaGGTTGTCAGATACCGCATC | + |
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Preference number: 2 (lower is better) Translates to: KPRIPRVKGWKQTTHSELTAIGH*VVRYRI Trigger: GATGCGGTATCTGACAACCCAGTGCCCTATCGCTGT...CAGTTCTGAGTGTGTGGTCTGTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CCA 90 bp | ATGAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGACCACACAGGAACTGTTGCTGGATaGCTGACACACTCTCCAGAT | + |
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Preference number: 2 (lower is better) Translates to: MRKETKNPKGQGLETDHTGTVAG*LTHSPD Trigger: ATCTGGAGAGTGTGTCAGCCATCCAGCAACAGTTCC...TGTGTGGTCTGTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGTGTTCGTAACTACCCAGCCACCTCTCCAGCTCCTTGTAAACCCTTTCTTAAGAAGCAGGCCAAATTaGGGGGAGATGAGGAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: SVFVTTQPPLQLLVNPFLRSRPN*GEMRKE Trigger: TTCCTTCCTCATCTCCCCTCAATTTGGCCTGCTTCT...TAAGAAAGGGTTTACAAGGAGCTGGAGAGGTGGCTGGGTAGTTACGAACACTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR TCA 90 bp | AAACACATTACCCACTGGGTCCACACTCACACTGATGGTGTCACTTCTATTTCACAAATTGAGGGGAGATaGGGAAGGAAACCAAGAATC | + |
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Preference number: 2 (lower is better) Translates to: KHITHWVHTHTDGVTSISQIEGR*GRKPRI Trigger: GATTCTTGGTTTCCTTCCTCATCTCCCCTCAATTTG...TGAAATAGAAGTGACACCATCAGTGTGAGTGTGGACCCAGTGGGTAATGTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR-3UTR GCA 90 bp | ACAAAACCCACTCTCAGAGAAGTAACTACACACACACACACATACACATGCATACCACACACTCAGAACTaGGTTCCTGGCCTATTTAAT | + |
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Preference number: 2 (lower is better) Translates to: TKPTLREVTTHTHTYTCIPHTQN*VPGLFN Trigger: ATTAAATAGGCCAGGAACGCAGTTCTGAGTGTGTGG...TATGCATGTGTATGTGTGTGTGTGTGTAGTTACTTCTCTGAGAGTGGGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR GCA 72 bp | AGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTaGAGAGGGCACACTCGTGTGCACGCCGTTGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: RQELHSCPQSLV*RGHTRVHAVGV Trigger: CACCCCAACGGCGTGCACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR GCA 72 bp | GGTGTCTTCAGTCCATCACCACAAGCACAAATAGGGTaGGGGTGGGCGGCAGGCGAGGGGAGATGTCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: GVFSPSPQAQIG*GWAAGEGRCPA Trigger: TGCTGGACATCTCCCCTCGCCTGCCGCCCACCCGCACCCTATTTGTGCTTGTGGTGATGGACTGAAGACACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR TCA 72 bp | AGGGCAGTCACCAAGCAGACTCACTTGTTCTTGTTCTaGGCGGGAGTCTCCTGCGCCCACCCCAGGAGTGTC | + |
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Preference number: 3 (lower is better) Translates to: RAVTKQTHLFLF*AGVSCAHPRSV Trigger: GACACTCCTGGGGTGGGCGCAGGAGACTCCCGCTCAGAACAAGAACAAGTGAGTCTGCTTGGTGACTGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CAA 90 bp | GCCGTGGGAAGCGATGCTGGAACTGTTGCTGGATGGCTGACACACTCTCCAGATTCGTGTCCACAGAGCTaGGTGTGCAGAGGGCACACT | + |
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Preference number: 3 (lower is better) Translates to: AVGSDAGTVAGWLTHSPDSCPQS*VCRGHT Trigger: AGTGTGCCCTCTGCACACCAAGCTCTGTGGACACGA...ATCTGGAGAGTGTGTCAGCCATCCAGCAACAGTTCCAGCATCGCTTCCCACGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR TCA 72 bp | CCGTGGGAAGCGATGCTGGAACTGTTGCTGGATGGCTaGCACACTCTCCAGATGGGAAACAGTTCCAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: PWEAMLELLLDG*HTLQMGNSSRF Trigger: GAACCTGGAACTGTTTCCCATCTGGAGAGTGTGTCAGCCATCCAGCAACAGTTCCAGCATCGCTTCCCACGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CAA 90 bp | AGGGGAGATGAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGATCGTGTCCACAGAGCTaGGTGTGCAGAGGGCACACT | + |
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Preference number: 3 (lower is better) Translates to: RGDEEGNQESQGSRAGNRSCPQS*VCRGHT Trigger: AGTGTGCCCTCTGCACACCAAGCTCTGTGGACACGA...TCTGTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCATCTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR-3UTR CAA 90 bp | GAATCCCAAGGGTCAAGGGCTGGAAACAGACCACACACTCAGAACTGCGTTCCTATAAGAGCTTGTGGGTaGGACCTTCCGCTGTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: ESQGSRAGNRPHTQNCVPIRACG*DLPLCL Trigger: GAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTAT...AGGAACGCAGTTCTGAGTGTGTGGTCTGTTTCCAGCCCTTGACCCTTGGGATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR GCA 72 bp | GGGTCAAGGGCTGGAAACAGACCACACACTCAGAACTaGGTTCCTGGCCTATTTAATGGCAAAGCCGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: GSRAGNRPHTQN*VPGLFNGKAVG Trigger: TCCCACGGCTTTGCCATTAAATAGGCCAGGAACGCAGTTCTGAGTGTGTGGTCTGTTTCCAGCCCTTGACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CCA 72 bp | AAAGCCGTGGGAAGCGATGCTGGAACTGTTGCTGGATaGCTGACACACTCTCCAGATGGGAAACAGTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: KAVGSDAGTVAG*LTHSPDGKQFQ Trigger: CTGGAACTGTTTCCCATCTGGAGAGTGTGTCAGCCATCCAGCAACAGTTCCAGCATCGCTTCCCACGGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CCA 72 bp | TGGCAAAGCCGTGGGAAGCGATGCTGGAACTGTTGCTaGATGGCTGACACACTCTCCAGATGGGAAACAGTT | + |
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Preference number: 3 (lower is better) Translates to: WQSRGKRCWNCC*MADTLSRWETV Trigger: AACTGTTTCCCATCTGGAGAGTGTGTCAGCCATCCAGCAACAGTTCCAGCATCGCTTCCCACGGCTTTGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CCA 72 bp | GAGATGTCCAGCACCTGTGCGGGAAATAAGAGCTTGTaGGTTGGACCTTCCGCTGTGCCTCACAGAAATGAA | + |
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Preference number: 3 (lower is better) Translates to: EMSSTCAGNKSL*VGPSAVPHRNE Trigger: TTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGCTGGACATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR TCA 72 bp | GGGCAAACACATTACCCACTGGGTCCACACTCACACTaGTGGTGTCACTTCTATTTCAAAGATGAGGGCAAG | + |
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Preference number: 3 (lower is better) Translates to: GQTHYPLGPHSH*WCHFYFKDEGK Trigger: CTTGCCCTCATCTTTGAAATAGAAGTGACACCATCAGTGTGAGTGTGGACCCAGTGGGTAATGTGTTTGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR GCA 72 bp | CTGACTATAATCCCTGAGAGGCTGAAGCAGGAGGATTaGCGTGATCTCAGGTCCATCTTAGAGAACACAACT | + |
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Preference number: 3 (lower is better) Translates to: LTIIPERLKQED*RDLRSILENTT Trigger: AGTTGTGTTCTCTAAGATGGACCTGAGATCACGGCAATCCTCCTGCTTCAGCCTCTCAGGGATTATAGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR TCA 72 bp | AAAAATCTACTAGAAGCAGGCCAAATTGAGGGGAGATaGGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: KNLLEAGQIEGR*GRKPRIPRVKG Trigger: GCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCATCTCCCCTCAATTTGGCCTGCTTCTAGTAGATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR TCA 72 bp | ACACTCACACTGATGGTGTCACTTCTATTTCAAAGATaGGGGCAAGGTTTACAAAACCCACTCTCAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: TLTLMVSLLFQR*GQGLQNPLSEK Trigger: CTTCTCTGAGAGTGGGTTTTGTAAACCTTGCCCTCATCTTTGAAATAGAAGTGACACCATCAGTGTGAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| 3UTR CCA 72 bp | AAACCTTATATAGTGATGGGCAAACACATTACCCACTaGGTCCACACTCACACTGATGGTGTCACTTCTATT | + |
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Preference number: 3 (lower is better) Translates to: KPYIVMGKHITH*VHTHTDGVTSI Trigger: AATAGAAGTGACACCATCAGTGTGAGTGTGGACCCAGTGGGTAATGTGTTTGCCCATCACTATATAAGGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS-3UTR GCA 90 bp | CGTTGGGGTGTAAAGCCAGTGCCCATGGCACAGGGCAGTCACCAAGCAGACTCACGACTGCCTGCACCATaGGTGGCCCCTCTGGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: RWGVKPVPMAQGSHQADSRLPAP*VAPLGV Trigger: GACCCCCAGAGGGGCCACGCATGGTGCAGGCAGTCG...TGAGTCTGCTTGGTGACTGCCCTGTGCCATGGGCACTGGCTTTACACCCCAACG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR CCA 90 bp | ATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTGCAGAGGGCTGCCTGCACCATGCGTaGCCCCTCTGGGGGTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: IRQDRSCTRVHRAWCAEGCLHHA*PLWGSE Trigger: CTCGGACCCCCAGAGGGGCCACGCATGGTGCAGGCA...GCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR TCA 90 bp | GTTCTGAGCGGGAGTCTCCTGCGCCCACCCCAGGAGTGTCGGGAGCAGCTCGGATGTGCCTCACAGAAATaGACTCTGGATGGCGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: VLSGSLLRPPQECREQLGCASQK*TLDGVA Trigger: TGCCACGCCATCCAGAGTTCATTTCTGTGAGGCACA...TCCGAGCTGCTCCCGACACTCCTGGGGTGGGCGCAGGAGACTCCCGCTCAGAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS-3UTR GCA 90 bp | ATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTGCAGAGGGCGCAGCCCGGACTGGTTaGAGCAGCTCAGCCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IRQDRSCTRVHRAWCAEGAARTG*SSSARQ Trigger: CTGCCTGGCTGAGCTGCTGCAACCAGTCCGGGCTGC...GCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR TCA 90 bp | GCCGTGGGAAGCGATGCTGGAACTGTTGCTGGATGGCTGACACACTCTCCAGATAGGGCTATCAGGCCCTaGGCGCGGAGGAGGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: AVGSDAGTVAGWLTHSPDRAIRP*ARRRSP Trigger: TGGACTCCTCCTCCGCGCTCAGGGCCTGATAGCCCT...ATCTGGAGAGTGTGTCAGCCATCCAGCAACAGTTCCAGCATCGCTTCCCACGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| 3UTR CAA 72 bp | CAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTaGGTGTGCAGAGGGCACACTCGTGTGCACGCCGTT | + |
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Preference number: 4 (lower is better) Translates to: QARQELHSCPQS*VCRGHTRVHAV Trigger: AACGGCGTGCACACGAGTGTGCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR TCA 90 bp | GTGCCCATGGCACAGGGCAGTCACCAAGCAGACTCACTTGTTCTTGTTCTGAGCAGGGCTATCAGGCCCTaGGCGCGGAGGAGGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VPMAQGSHQADSLVLVLSRAIRP*ARRRSP Trigger: TGGACTCCTCCTCCGCGCTCAGGGCCTGATAGCCCT...GCTCAGAACAAGAACAAGTGAGTCTGCTTGGTGACTGCCCTGTGCCATGGGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR GCA 90 bp | GAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACAGACCACACACTCGACTGCCTGCACCATaGGTGGCCCCTCTGGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: EEGNQESQGSRAGNRPHTRLPAP*VAPLGV Trigger: GACCCCCAGAGGGGCCACGCATGGTGCAGGCAGTCG...AGTGTGTGGTCTGTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR CCA 90 bp | TTGAGGGGAGATGAGGAAGGAAACCAAGAATCCCAAGGGTCAAGGGCTGGAAACTGCCTGCACCATGCGTaGCCCCTCTGGGGGTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: LRGDEEGNQESQGSRAGNCLHHA*PLWGSE Trigger: CTCGGACCCCCAGAGGGGCCACGCATGGTGCAGGCA...GTTTCCAGCCCTTGACCCTTGGGATTCTTGGTTTCCTTCCTCATCTCCCCTCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR GCA 90 bp | CTATTTAATGGCAAAGCCGTGGGAAGCGATGCTGGAACTGTTGCTGGATGGCTGGCAGCCCGGACTGGTTaGAGCAGCTCAGCCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LFNGKAVGSDAGTVAGWLAARTG*SSSARQ Trigger: CTGCCTGGCTGAGCTGCTGCAACCAGTCCGGGCTGC...CAGCCATCCAGCAACAGTTCCAGCATCGCTTCCCACGGCTTTGCCATTAAATAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR CCA 90 bp | ATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTGCAGAGGGCGAAATGAACTCTGGATaGCGTGGCACAGAACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: IRQDRSCTRVHRAWCAEGEMNSG*RGTEQA Trigger: AGCCTGTTCTGTGCCACGCCATCCAGAGTTCATTTC...GCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| 3UTR CAA 72 bp | GGGGAGATGTCCAGCACCTGTGCGGGAAATAAGAGCTaGTGGGTTGGACCTTCCGCTGTGCCTCACAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: GEMSSTCAGNKS*WVGPSAVPHRN Trigger: ATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGCTGGACATCTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS-3UTR GCA 90 bp | TCAGTGTTCGTAACTACCCAGCCACCTCTCCAGCTCCTTGTAAACCCTTTCTTACAAGCACAAATAGGGTaGGGGTGGGCGGCAGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: SVFVTTQPPLQLLVNPFLQAQIG*GWAAGE Trigger: CTCGCCTGCCGCCCACCCGCACCCTATTTGTGCTTG...TAAGAAAGGGTTTACAAGGAGCTGGAGAGGTGGCTGGGTAGTTACGAACACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| 3UTR CAA 72 bp | TGTCCAGCACCTGTGCGGGAAATAAGAGCTTGTGGGTaGGACCTTCCGCTGTGCCTCACAGAAATGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: CPAPVREIRACG*DLPLCLTEMNS Trigger: AGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTATTTCCCGCACAGGTGCTGGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS-3UTR GCA 90 bp | TTGTCAGATACCGCATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTTTGGACCTTCCGCTGTaGCTCACAGAAATGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: LSDTASGKTGAALVSTELLDLPL*LTEMNS Trigger: AGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAA...AAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGATGCGGTATCTGACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS CCA 90 bp | CAGCACGACTGCCTGCACCATGCGTGGCCCCTCTGGGGGTCCGAGTaGCAGCCCGGACTGGTTGCAGCAGCTCAGCCAGGCAGCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: QHDCLHHAWPLWGSE*QPGLVAAAQPGSLG Trigger: GCCAAGGCTGCCTGGCTGAGCTGCTGCAACCAGTCCGGGCTGCCACTCGGACCCCCAGAGGGGCCACGCATGGTGCAGGCAGTCGTGCTG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS TCA 90 bp | GGAGTCGTCATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGGTTaGATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCCCTGAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: GVVIPSTGTRLSLGG*MPFSGQQGYQALSA Trigger: CGCGCTCAGGGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGATGACGACTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS TCA 90 bp | AGGAGTCGTCATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGTTaGATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCCCTGAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: RSRHPLHRHQAQPRG*MPFSGQQGYQALSA Trigger: CGCGCTCAGGGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGATGACGACTCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS TCA 90 bp | CTCGGGGTTGAATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCCCTaGGCGCGGAGGAGGAGTCCACCACCCAGGAACAGGATCCCACAG | + |
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Preference number: 5 (lower is better) Translates to: LGVECLSRASRAIRP*ARRRSPPPRNRIPQ Trigger: CTGTGGGATCCTGTTCCTGGGTGGTGGACTCCTCCTCCGCGCTCAGGGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS TCA 90 bp | TCGGGGGTTGAATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCCCTaGGCGCGGAGGAGGAGTCCACCACCCAGGAACAGGATCCCACAG | + |
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Preference number: 5 (lower is better) Translates to: SGVECLSRASRAIRP*ARRRSPPPRNRIPQ Trigger: CTGTGGGATCCTGTTCCTGGGTGGTGGACTCCTCCTCCGCGCTCAGGGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCCGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS-3UTR CAA 90 bp | TGTGCACGCCGTTGGGGTGTAAAGCCAGTGCCCATGGCACAGGGCAGTCACCAAGGCAGCCCGGACTGGTaGCAGCAGCTCAGCCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: CARRWGVKPVPMAQGSHQGSPDW*QQLSQA Trigger: TGCCTGGCTGAGCTGCTGCAACCAGTCCGGGCTGCC...TTGGTGACTGCCCTGTGCCATGGGCACTGGCTTTACACCCCAACGGCGTGCACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS TCA 90 bp | GAGGAGTCCACCACCCAGGAACAGGATCCCACAGAGCACCAAAAGTaGCAGGACGCCCAGCACGACTGCCTGCACCATGCGTGGCCCCTC | + |
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Preference number: 5 (lower is better) Translates to: EESTTQEQDPTEHQK*QDAQHDCLHHAWPL Trigger: GAGGGGCCACGCATGGTGCAGGCAGTCGTGCTGGGCGTCCTGTCACTTTTGGTGCTCTGTGGGATCCTGTTCCTGGGTGGTGGACTCCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR CAA 90 bp | TGTGGGTTGGACCTTCCGCTGTGCCTCACAGAAATGAACTCTGGATGGCGTGGCCTCAGCCAGGCAGCCTaGGCTGCAGCTCCCACCTGT | + |
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Preference number: 5 (lower is better) Translates to: CGLDLPLCLTEMNSGWRGLSQAA*AAAPTC Trigger: ACAGGTGGGAGCTGCAGCCAAGGCTGCCTGGCTGAG...GCCACGCCATCCAGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS-3UTR CAA 90 bp | ATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTGCAGAGGGCGGCTCAGCCTCGGGGTaGAATGCCTTTCTCGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: IRQDRSCTRVHRAWCAEGGSASG*NAFLGP Trigger: TGGCCCGAGAAAGGCATTCAACCCCGAGGCTGAGCC...GCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS-3UTR CAA 90 bp | ATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTGCAGAGGGCGCTCAGCCTCGGGGGTaGAATGCCTTTCTCGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: IRQDRSCTRVHRAWCAEGAQPRG*NAFLGP Trigger: TGGCCCGAGAAAGGCATTCAACCCCCGAGGCTGAGC...GCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS-3UTR CAA 90 bp | CCAGTGCCCATGGCACAGGGCAGTCACCAAGCAGACTCACTTGTTCTTGTTCTGCTCAGCCAGGCAGCCTaGGCTGCAGCTCCCACCTGT | + |
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Preference number: 5 (lower is better) Translates to: PVPMAQGSHQADSLVLVLLSQAA*AAAPTC Trigger: ACAGGTGGGAGCTGCAGCCAAGGCTGCCTGGCTGAG...CAGAACAAGAACAAGTGAGTCTGCTTGGTGACTGCCCTGTGCCATGGGCACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR CAA 90 bp | TTGTCAGATACCGCATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGCAGCCCGGACTGGTaGCAGCAGCTCAGCCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: LSDTASGKTGAALVSTELGSPDW*QQLSQA Trigger: TGCCTGGCTGAGCTGCTGCAACCAGTCCGGGCTGCC...AAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGATGCGGTATCTGACAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS-3UTR CAA 90 bp | ATCAGGCAAGACAGGAGCTGCACTCGTGTCCACAGAGCTTGGTGTGCAGAGGGCATAAGAGCTTGTGGGTaGGACCTTCCGCTGTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: IRQDRSCTRVHRAWCAEGIRACG*DLPLCL Trigger: GAGGCACAGCGGAAGGTCCAACCCACAAGCTCTTAT...GCCCTCTGCACACCAAGCTCTGTGGACACGAGTGCAGCTCCTGTCTTGCCTGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS CCA 90 bp | TGTGGGTTGGACCTTCCGCTGTGCCTCACAGAAATGAACTCTGGATaGCGTGGCACAGAACAGGCTGAATCTCAAGAGCAGCTGACACCT | + |
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Preference number: 5 (lower is better) Translates to: CGLDLPLCLTEMNSG*RGTEQAESQEQLTP Trigger: AGGTGTCAGCTGCTCTTGAGATTCAGCCTGTTCTGTGCCACGCCATCCAGAGTTCATTTCTGTGAGGCACAGCGGAAGGTCCAACCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS CCA 72 bp | TGCCTGCACCATGCGTGGCCCCTCTGGGGGTCCGAGTaGCAGCCCGGACTGGTTGCAGCAGCTCAGCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: CLHHAWPLWGSE*QPGLVAAAQPG Trigger: GCCTGGCTGAGCTGCTGCAACCAGTCCGGGCTGCCACTCGGACCCCCAGAGGGGCCACGCATGGTGCAGGCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS CAA 90 bp | AGGAGTCGTCATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGGTaGAATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCCCTGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: RSRHPLHRHQAQPRG*NAFLGPAGLSGPER Trigger: GCGCTCAGGGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGATGACGACTCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS TCA 72 bp | GAATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCCCTaGGCGCGGAGGAGGAGTCCACCACCCAGGAACAGG | + |
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Preference number: 6 (lower is better) Translates to: ECLSRASRAIRP*ARRRSPPPRNR Trigger: CCTGTTCCTGGGTGGTGGACTCCTCCTCCGCGCTCAGGGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071328.7 ENSMUST00000191426.2 |
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| CDS TCA 72 bp | CATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGTTaGATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: HPLHRHQAQPRG*MPFSGQQGYQA Trigger: GGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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| CDS TCA 72 bp | ATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGGTTaGATGCCTTTCTCGGGCCAGCAGGGCTATCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: IPSTGTRLSLGG*MPFSGQQGYQA Trigger: GGCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGAT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS CAA 72 bp | CATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGGTaGAATGCCTTTCTCGGGCCAGCAGGGCTATCAGGC | + |
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Preference number: 6 (lower is better) Translates to: HPLHRHQAQPRG*NAFLGPAGLSG Trigger: GCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGATG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191426.2 |
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| CDS CAA 72 bp | TCATCCCCTCCACAGGCACCAGGCTCAGCCTCGGGGTaGAATGCCTTTCTCGGGCCAGCAGGGCTATCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SSPPQAPGSASG*NAFLGPAGLSG Trigger: GCCTGATAGCCCTGCTGGCCCGAGAAAGGCATTCAACCCCGAGGCTGAGCCTGGTGCCTGTGGAGGGGATGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071328.7 |
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