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Pregenerated sensors for SMIM40 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092349

Ensembl transcript IDs: ENSMUST00000172817.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAATGAGATCTaGTGCCCTCTTCTGGGGTGTCTGAAGACAGCGACAGTGTACGTA +
Preference number: 1 (lower is better)
Translates to: IPATTWWLTTILNEI*CPLLGCLKTATVYV
Trigger: TACGTACACTGTCGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
3UTR-3UTR CCA 90 bp GCGATTGCAATAGGCAAAAGAACAGAAGCAGCCAACTGGCCCGTAAAACAGATATACACTCTTAAGGGTTaGAGAAATGGCTCAGCGGTT +
Preference number: 2 (lower is better)
Translates to: AIAIGKRTEAANWPVKQIYTLKG*RNGSAV
Trigger: AACCGCTGAGCCATTTCTCCAACCCTTAAGAGTGTA...TATCTGTTTTACGGGCCAGTTGGCTGCTTCTGTTCTTTTGCCTATTGCAATCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
3UTR TCA 72 bp ACCACATGGTGGCTCACAACCATCCTTAATGAGATCTaGTGCCCTCTTCTGGGGTGTCTGAAGACAGCGACA +
Preference number: 3 (lower is better)
Translates to: TTWWLTTILNEI*CPLLGCLKTAT
Trigger: TGTCGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTAAGGATGGTTGTGAGCCACCATGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
3UTR-3UTR CAA 90 bp CTTAAGGGTTGGAGAAATGGCTCAGCGGTTAAGAGCACTGACTGCTGTTCCAGAACATATAATAAATCTTaGAGTGAGCTGGGCTCAGTA +
Preference number: 3 (lower is better)
Translates to: LKGWRNGSAVKSTDCCSRTYNKS*SELGSV
Trigger: TACTGAGCCCAGCTCACTCAAAGATTTATTATATGT...TCTGGAACAGCAGTCAGTGCTCTTAACCGCTGAGCCATTTCTCCAACCCTTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
3UTR CCA 72 bp AGAAGCAGCCAACTGGCCCGTAAAACAGATAAAATGTaGTTCGGACATACAATGGAGTCTTACAGCCAGAAA +
Preference number: 3 (lower is better)
Translates to: RSSQLARKTDKM*FGHTMESYSQK
Trigger: TTTCTGGCTGTAAGACTCCATTGTATGTCCGAACCACATTTTATCTGTTTTACGGGCCAGTTGGCTGCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS-3UTR CCA 90 bp AATGGCTCAGCGGTTAAGAGCACTGACTGCTGTTCCAGAGGTCCTGAGTTCAAAGCCAGTCCTGAAACTTaGCCCATGGCAGGGGCCACA +
Preference number: 4 (lower is better)
Translates to: NGSAVKSTDCCSRGPEFKASPET*PMAGAT
Trigger: TGTGGCCCCTGCCATGGGCCAAGTTTCAGGACTGGC...TTTGAACTCAGGACCTCTGGAACAGCAGTCAGTGCTCTTAACCGCTGAGCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS-3UTR CCA 90 bp AAATGTGGTTCGGACATACAATGGAGTCTTACAGCCAGAAAGAAAACTGAAACCGCCCCCGAGGAGGAATaGGACCCTGGGCAAATGCTA +
Preference number: 4 (lower is better)
Translates to: KCGSDIQWSLTARKKTETAPEEE*DPGQML
Trigger: TAGCATTTGCCCAGGGTCCCATTCCTCCTCGGGGGC...GGTTTCAGTTTTCTTTCTGGCTGTAAGACTCCATTGTATGTCCGAACCACATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS-3UTR TCA 90 bp AATCAAAAGGAAATAAAATACACTCTTAAGGGTTGGAGAAATGGCTCAGCGGTTCTCAGGAGCCAGTCCTaGAACTTGGCCCATGGCAGG +
Preference number: 4 (lower is better)
Translates to: NQKEIKYTLKGWRNGSAVLRSQS*NLAHGR
Trigger: CCTGCCATGGGCCAAGTTTCAGGACTGGCTCCTGAG...AACCGCTGAGCCATTTCTCCAACCCTTAAGAGTGTATTTTATTTCCTTTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS-3UTR GCA 90 bp AATCAAAAGGAAATAAAATACACTCTTAAGGGTTGGAGAAATGGCTCAGCGGTTTCAGAGTTCCAGAGCTaGCTCCTCCTCAGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: NQKEIKYTLKGWRNGSAVSEFQS*LLLRGP
Trigger: AGGACCCCTGAGGAGGAGGCAGCTCTGGAACTCTGA...AACCGCTGAGCCATTTCTCCAACCCTTAAGAGTGTATTTTATTTCCTTTTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS-3UTR CCA 90 bp CAAAAGGAAATAAAATACACTCTTAAGGGTTGGAGAAATGGCTCAGCGGTTAAGCTGAAACTTGGCCCATaGCAGGGGCCACAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: QKEIKYTLKGWRNGSAVKLKLGP*QGPQQF
Trigger: AAACTGCTGTGGCCCCTGCCATGGGCCAAGTTTCAG...CTTAACCGCTGAGCCATTTCTCCAACCCTTAAGAGTGTATTTTATTTCCTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS CCA 90 bp GGAAGATCTTGTCCAAAGCCCGCCGCACGGGCCCCCGAGGAGGAATaGGACCCTGGGCAAATGCTAGGAACACGTCCCCCTCCTCCACGC +
Preference number: 5 (lower is better)
Translates to: GRSCPKPAARAPEEE*DPGQMLGTRPPPPR
Trigger: GCGTGGAGGAGGGGGACGTGTTCCTAGCATTTGCCCAGGGTCCCATTCCTCCTCGGGGGCCCGTGCGGCGGGCTTTGGACAAGATCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS CCA 90 bp CTCCTCCTCAGGGGTCCTCAGGAGCCAGTCCTGAAACTTGGCCCATaGCAGGGGCCACAGCAGTTTGTAAGCAGCCTCCAGCATCAGCAG +
Preference number: 5 (lower is better)
Translates to: LLLRGPQEPVLKLGP*QGPQQFVSSLQHQQ
Trigger: CTGCTGATGCTGGAGGCTGCTTACAAACTGCTGTGGCCCCTGCCATGGGCCAAGTTTCAGGACTGGCTCCTGAGGACCCCTGAGGAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS CCA 72 bp GCCCGCCGCACGGGCCCCCGAGGAGGAATGGGACCCTaGGCAAATGCTAGGAACACGTCCCCCTCCTCCACG +
Preference number: 6 (lower is better)
Translates to: ARRTGPRGGMGP*ANARNTSPSST
Trigger: CGTGGAGGAGGGGGACGTGTTCCTAGCATTTGCCCAGGGTCCCATTCCTCCTCGGGGGCCCGTGCGGCGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS CAA 90 bp AGCATCAGCAGAGTCAGGAAGAGGACCAAGAAGGCGAGGAAGATCTaGTCCAAAGCCCGCCGCACGGGCCCCCGAGGAGGAATGGGACCC +
Preference number: 6 (lower is better)
Translates to: SISRVRKRTKKARKI*SKARRTGPRGGMGP
Trigger: GGGTCCCATTCCTCCTCGGGGGCCCGTGCGGCGGGCTTTGGACAAGATCTTCCTCGCCTTCTTGGTCCTCTTCCTGACTCTGCTGATGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS CAA 72 bp AGAGTCAGGAAGAGGACCAAGAAGGCGAGGAAGATCTaGTCCAAAGCCCGCCGCACGGGCCCCCGAGGAGGA +
Preference number: 6 (lower is better)
Translates to: RVRKRTKKARKI*SKARRTGPRGG
Trigger: TCCTCCTCGGGGGCCCGTGCGGCGGGCTTTGGACAAGATCTTCCTCGCCTTCTTGGTCCTCTTCCTGACTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2
CDS CCA 72 bp AGGGGTCCTCAGGAGCCAGTCCTGAAACTTGGCCCATaGCAGGGGCCACAGCAGTTTGTAAGCAGCCTCCAG +
Preference number: 6 (lower is better)
Translates to: RGPQEPVLKLGP*QGPQQFVSSLQ
Trigger: CTGGAGGCTGCTTACAAACTGCTGTGGCCCCTGCCATGGGCCAAGTTTCAGGACTGGCTCCTGAGGACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172817.2