Pregenerated sensors for SMIM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058351Ensembl transcript IDs: ENSMUST00000049732.11, ENSMUST00000064032.10, ENSMUST00000090205.5, ENSMUST00000203261.3
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACATTTGACTTCTGGTTTAATAGGGTTGCTCTGCTTTCTCCTTATTaGGATGAGACTGTAAAGGGGCCAAGAGTAGAAGCAAGGAGATCT | + |
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Preference number: 1 (lower is better) Translates to: TFDFWFNRVALLSPY*DETVKGPRVEARRS Trigger: AGATCTCCTTGCTTCTACTCTTGGCCCCTTTACAGTCTCATCTCAATAAGGAGAAAGCAGAGCAACCCTATTAAACCAGAAGTCAAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR TCA 90 bp | GTAGATGGGGTAATGGGCAGATCATGTAAGGTTTCAGAAACCATGTaGGCCCTTGAACTATTACAGAGTTACAAAAAGTGTCTTTGTTAT | + |
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Preference number: 1 (lower is better) Translates to: VDGVMGRSCKVSETM*ALELLQSYKKCLCY Trigger: ATAACAAAGACACTTTTTGTAACTCTGTAATAGTTCAAGGGCTCACATGGTTTCTGAAACCTTACATGATCTGCCCATTACCCCATCTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR TCA 90 bp | TCAGGGAAAGCATTCCAGGCAGAATTAATAACCAGAATAAAGGCCTaGGAGATAAGTACATCACTCTTAACCTGTAATTCACTTATCAGC | + |
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Preference number: 1 (lower is better) Translates to: SGKAFQAELITRIKA*EISTSLLTCNSLIS Trigger: GCTGATAAGTGAATTACAGGTTAAGAGTGATGTACTTATCTCTCAGGCCTTTATTCTGGTTATTAATTCTGCCTGGAATGCTTTCCCTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR CCA 90 bp | AACAGAGAGAATGGTTTGAATAGATTTCACAAAGAATGTGGCAGTTaGGTTACTGTGAAGAAATGTAAGAATTGTGACTATCAGGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: NRENGLNRFHKECGS*VTVKKCKNCDYQGK Trigger: CTTTCCCTGATAGTCACAATTCTTACATTTCTTCACAGTAACCCAACTGCCACATTCTTTGTGAAATCTATTCAAACCATTCTCTCTGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR-3UTR TCA 90 bp | ACATCACTCTTAACCTGTAATTCACTTATCAGCATAGTGAGCCCTATAAAAGGTCTGCTTTCTCCTTATTaGGATGAGACTGTAAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: TSLLTCNSLISIVSPIKGLLSPY*DETVKG Trigger: CCCCTTTACAGTCTCATCTCAATAAGGAGAAAGCAG...ACCTTTTATAGGGCTCACTATGCTGATAAGTGAATTACAGGTTAAGAGTGATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR-3UTR TCA 90 bp | AGAATTAATAACCAGAATAAAGGCCTGAGAGATAAGTACATCACTCTTAACCTGGATGACTCACTCCTGTaGGTAGTTAGGAAACTGGAA | + |
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Preference number: 2 (lower is better) Translates to: RINNQNKGLRDKYITLNLDDSLL*VVRKLE Trigger: TTCCAGTTTCCTAACTACTCACAGGAGTGAGTCATC...CAGGTTAAGAGTGATGTACTTATCTCTCAGGCCTTTATTCTGGTTATTAATTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR-3UTR TCA 90 bp | ACATCACTCTTAACCTGTAATTCACTTATCAGCATAGTGAGCCCTATAAAAGGTAACCATGTGAGCCCTTaGACTATTACAGAGTTACAA | + |
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Preference number: 2 (lower is better) Translates to: TSLLTCNSLISIVSPIKGNHVSP*TITELQ Trigger: TTGTAACTCTGTAATAGTTCAAGGGCTCACATGGTT...ACCTTTTATAGGGCTCACTATGCTGATAAGTGAATTACAGGTTAAGAGTGATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR-3UTR TCA 90 bp | ACATCACTCTTAACCTGTAATTCACTTATCAGCATAGTGAGCCCTATAAAAGGTATGGCCTCTTTAGTGTaGCTAATTACAAACAGTAGT | + |
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Preference number: 2 (lower is better) Translates to: TSLLTCNSLISIVSPIKGMASLV*LITNSS Trigger: ACTACTGTTTGTAATTAGTCACACTAAAGAGGCCAT...ACCTTTTATAGGGCTCACTATGCTGATAAGTGAATTACAGGTTAAGAGTGATGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR-3UTR GCA 90 bp | ACATCACTCTTAACCTGTAATTCACTTATCAGCATAGTGAGCCCTATAAAAGGTCTATGTCTAGAACCCTaGAAATGTGGGACAATAATA | + |
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Preference number: 2 (lower is better) Translates to: TSLLTCNSLISIVSPIKGLCLEP*KCGTII Trigger: TATTATTGTCCCACATTTGCAGGGTTCTAGACATAG...ACCTTTTATAGGGCTCACTATGCTGATAAGTGAATTACAGGTTAAGAGTGATGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR CCA 72 bp | GAGGGCAGGCTAACAGCAGTCTTAGTAAATACAATGTaGAGTTCCAGGGTAGAGCTTTCAAGGATGACTCAC | + |
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Preference number: 3 (lower is better) Translates to: EGRLTAVLVNTM*SSRVELSRMTH Trigger: GTGAGTCATCCTTGAAAGCTCTACCCTGGAACTCCACATTGTATTTACTAAGACTGCTGTTAGCCTGCCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064032.10 ENSMUST00000203261.3 |
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| 3UTR TCA 72 bp | TTCTGGTTTAATAGGGTTGCTCTGCTTTCTCCTTATTaGGATGAGACTGTAAAGGGGCCAAGAGTAGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: FWFNRVALLSPY*DETVKGPRVEA Trigger: TGCTTCTACTCTTGGCCCCTTTACAGTCTCATCTCAATAAGGAGAAAGCAGAGCAACCCTATTAAACCAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR TCA 72 bp | GTAATGGGCAGATCATGTAAGGTTTCAGAAACCATGTaGGCCCTTGAACTATTACAGAGTTACAAAAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: VMGRSCKVSETM*ALELLQSYKKC Trigger: ACACTTTTTGTAACTCTGTAATAGTTCAAGGGCTCACATGGTTTCTGAAACCTTACATGATCTGCCCATTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR-3UTR CAA 90 bp | ACATCACTCTTAACCTGTAATTCACTTATCAGCATAGTGAGCCCTATAAAAGGTTCTGGTTTAATAGGGTaGCTCTGCTTTCTCCTTATT | + |
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Preference number: 3 (lower is better) Translates to: TSLLTCNSLISIVSPIKGSGLIG*LCFLLI Trigger: AATAAGGAGAAAGCAGAGCAACCCTATTAAACCAGA...ACCTTTTATAGGGCTCACTATGCTGATAAGTGAATTACAGGTTAAGAGTGATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR TCA 72 bp | GCATTCCAGGCAGAATTAATAACCAGAATAAAGGCCTaGGAGATAAGTACATCACTCTTAACCTGTAATTCA | + |
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Preference number: 3 (lower is better) Translates to: AFQAELITRIKA*EISTSLLTCNS Trigger: TGAATTACAGGTTAAGAGTGATGTACTTATCTCTCAGGCCTTTATTCTGGTTATTAATTCTGCCTGGAATGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR TCA 72 bp | ATAGATTTCACAAAGAATGTGGCAGTTGGGTTACTGTaGAGAAATGTAAGAATTGTGACTATCAGGGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: IDFTKNVAVGLL*RNVRIVTIRES Trigger: GCTTTCCCTGATAGTCACAATTCTTACATTTCTTCACAGTAACCCAACTGCCACATTCTTTGTGAAATCTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| 3UTR TCA 72 bp | AGGAAACTGGAAGATTGGAGTTATTATTCACTGAAATaGAAATGTTGCTCTATGTCTAGAACCCTGCAAATG | + |
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Preference number: 3 (lower is better) Translates to: RKLEDWSYYSLK*KCCSMSRTLQM Trigger: CATTTGCAGGGTTCTAGACATAGAGCAACATTTTCATTTCAGTGAATAATAACTCCAATCTTCCAGTTTCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064032.10 ENSMUST00000203261.3 |
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| CDS-3UTR TCA 90 bp | GGGTGGGTGTGGAACCCCCTGGAGCTGGAGTTACAGACAGTTGTGAGCTGCCATCCATCTCACCAGCCCTaGAAAGAAGGTCTCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GWVWNPLELELQTVVSCHPSHQP*KEGLLA Trigger: GGCCAGGAGACCTTCTTTTCAGGGCTGGTGAGATGG...ATGGCAGCTCACAACTGTCTGTAACTCCAGCTCCAGGGGGTTCCACACCCACCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090205.5 |
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| CDS-3UTR GCA 90 bp | TTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTCAACCTGGATCCAGTGCCGAATCGCTGCTTaGCGGGCACTCGCTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LQTVVSCHVGAGNSTWIQCRIAA*RALAEE Trigger: CTCTTCAGCGAGTGCCCGGCAAGCAGCGATTCGGCA...CTGGATCCAGGTTGAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090205.5 |
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| CDS-3UTR GCA 90 bp | ACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTCAACCTGGATCCAGTGGCAGGAATCTGTAGATaGCGAATCGCTGCTTGCCGG | + |
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Preference number: 4 (lower is better) Translates to: TDSCELPCGCWEFNLDPVAGICR*RIAACR Trigger: CCGGCAAGCAGCGATTCGGCATCTACAGATTCCTGC...CACTGGATCCAGGTTGAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090205.5 |
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| CDS-3UTR CCA 90 bp | CTGGAGCTGGAGTTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTCAGAAAAGAAGGTCTCCTaGCCCACGCGCACTTTAATC | + |
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Preference number: 4 (lower is better) Translates to: LELELQTVVSCHVGAGNSEKKVS*PTRTLI Trigger: GATTAAAGTGCGCGTGGGCCAGGAGACCTTCTTTTC...TGAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTGTAACTCCAGCTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090205.5 |
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| CDS-3UTR GCA 90 bp | GTGCTGGATCTTGCACAAAGATCTGTGATCCTCTGTTTTGAAGGAATGTTTGCCGCAGGAATCTGTAGATaGCGAATCGCTGCTTGCCGG | + |
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Preference number: 4 (lower is better) Translates to: VLDLAQRSVILCFEGMFAAGICR*RIAACR Trigger: CCGGCAAGCAGCGATTCGGCATCTACAGATTCCTGC...GGCAAACATTCCTTCAAAACAGAGGATCACAGATCTTTGTGCAAGATCCAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064032.10 |
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| CDS-3UTR GCA 90 bp | GTTTCAAGCAGAGAAGTAACATTTGACTTCTGGTTTAATAGGGTTGCTCTGCTTTGCCGAATCGCTGCTTaGCGGGCACTCGCTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: VSSREVTFDFWFNRVALLCRIAA*RALAEE Trigger: CTCTTCAGCGAGTGCCCGGCAAGCAGCGATTCGGCA...AAGCAGAGCAACCCTATTAAACCAGAAGTCAAATGTTACTTCTCTGCTTGAAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| CDS-3UTR GCA 90 bp | AAATGTTGCTCTATGTCTAGAACCCTGCAAATGTGGGACAATAATACTGATTTTTGCCGAATCGCTGCTTaGCGGGCACTCGCTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: KCCSMSRTLQMWDNNTDFCRIAA*RALAEE Trigger: CTCTTCAGCGAGTGCCCGGCAAGCAGCGATTCGGCA...AAAATCAGTATTATTGTCCCACATTTGCAGGGTTCTAGACATAGAGCAACATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064032.10 |
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| CDS-3UTR TCA 90 bp | CGGGAAAGTACTTTAGTGCTGGATCTTGCACAAAGATCTGTGATCCTCTGTTTTATGAAGATTGGTTTCTaGTGTATCTTCCAGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: RESTLVLDLAQRSVILCFMKIGF*CIFQPS Trigger: AGAAGGCTGGAAGATACATCAGAAACCAATCTTCAT...AAAACAGAGGATCACAGATCTTTGTGCAAGATCCAGCACTAAAGTACTTTCCCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064032.10 |
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| CDS-3UTR CCA 90 bp | AGAATTAATAACCAGAATAAAGGCCTGAGAGATAAGTACATCACTCTTAACCTGAAACAGAAGGTCTCCTaGCCCACGCGCACTTTAATC | + |
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Preference number: 4 (lower is better) Translates to: RINNQNKGLRDKYITLNLKQKVS*PTRTLI Trigger: GATTAAAGTGCGCGTGGGCCAGGAGACCTTCTGTTT...CAGGTTAAGAGTGATGTACTTATCTCTCAGGCCTTTATTCTGGTTATTAATTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| CDS-3UTR TCA 90 bp | GAAAATGTTGCTCTATGTCTAGAACCCTGCAAATGTGGGACAATAATACTGATTCTGATACTGTCTTTCTaGAGCTTTTCTACGGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: ENVALCLEPCKCGTIILILILSF*SFSTVD Trigger: GTCTACCGTAGAAAAGCTTCAGAAAGACAGTATCAG...AATCAGTATTATTGTCCCACATTTGCAGGGTTCTAGACATAGAGCAACATTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064032.10 |
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| 3UTR CAA 72 bp | ACCCTGCAAATGTGGGACAATAATACTGATTTTAAGTaGATAAATAGGACAGTACAACATCGCAACGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TLQMWDNNTDFK*INRTVQHRNGK Trigger: TTTCCCGTTGCGATGTTGTACTGTCCTATTTATCAACTTAAAATCAGTATTATTGTCCCACATTTGCAGGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064032.10 |
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| CDS-3UTR TCA 90 bp | AGAATTAATAACCAGAATAAAGGCCTGAGAGATAAGTACATCACTCTTAACCTGTGTGATCCTCTGTTTTaGAGGAATGTTTGCCAAATC | + |
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Preference number: 4 (lower is better) Translates to: RINNQNKGLRDKYITLNLCDPLF*RNVCQI Trigger: GATTTGGCAAACATTCCTTCAAAACAGAGGATCACA...CAGGTTAAGAGTGATGTACTTATCTCTCAGGCCTTTATTCTGGTTATTAATTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203261.3 |
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| CDS GCA 72 bp | AGAAGGGCAGGAATCTGTAGATGCCGAATCGCTGCTTaGCGGGCACTCGCTGAAGAGCTCGCCTCACCTGGG | + |
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Preference number: 6 (lower is better) Translates to: RRAGICRCRIAA*RALAEELASPG Trigger: CCCAGGTGAGGCGAGCTCTTCAGCGAGTGCCCGGCAAGCAGCGATTCGGCATCTACAGATTCCTGCCCTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049732.11 ENSMUST00000064032.10 ENSMUST00000090205.5 ENSMUST00000203261.3 |
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| CDS CCA 72 bp | CTGAGCCATCTCACCAGCCCTGAAAAGAAGGTCTCCTaGCCCACGCGCACTTTAATCATGATCCACTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LSHLTSPEKKVS*PTRTLIMIHSI Trigger: GATGGAGTGGATCATGATTAAAGTGCGCGTGGGCCAGGAGACCTTCTTTTCAGGGCTGGTGAGATGGCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090205.5 |
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