Pregenerated sensors for SMIM31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074300Ensembl transcript IDs: ENSMUST00000098713.5
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCAAAATCCTGGTGACTCAGCCCTCTGTGGCTCTGAGGGTCTGGTaGCCTCCTCTGGCCTTTGTGGGCATCTGCACTCATGTGAACATA | + |
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Preference number: 1 (lower is better) Translates to: VKILVTQPSVALRVW*PPLAFVGICTHVNI Trigger: TATGTTCACATGAGTGCAGATGCCCACAAAGGCCAGAGGAGGGCACCAGACCCTCAGAGCCACAGAGGGCTGAGTCACCAGGATTTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR GCA 90 bp | TCTTGGAGCTGGAGCAGTGGCTCAGTAGTTAAGGGCGTTTGCTGTTaGAGAGGACCTGAGTTCAGTTGTCAAAATCCTGGTGACTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: SWSWSSGSVVKGVCC*RGPEFSCQNPGDSA Trigger: GGCTGAGTCACCAGGATTTTGACAACTGAACTCAGGTCCTCTGCAACAGCAAACGCCCTTAACTACTGAGCCACTGCTCCAGCTCCAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR GCA 90 bp | CATTGTTCTTGGAGCTGGAGCAGTGGCTCAGTAGTTAAGGGCGTTTaGTGTTGCAGAGGACCTGAGTTCAGTTGTCAAAATCCTGGTGAC | + |
|
Preference number: 1 (lower is better) Translates to: HCSWSWSSGSVVKGV*CCRGPEFSCQNPGD Trigger: GTCACCAGGATTTTGACAACTGAACTCAGGTCCTCTGCAACAGCAAACGCCCTTAACTACTGAGCCACTGCTCCAGCTCCAAGAACAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR-3UTR GCA 90 bp | GTTTGCTGTTGCAGAGGACCTGAGTTCAGTTGTCAAAATCCTGGTGACTCAGCCTTAGGGGAGCGACTGTaGACTCACAGGTGGCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: VCCCRGPEFSCQNPGDSALGERL*THRWLR Trigger: CCTCAGCCACCTGTGAGTGCACAGTCGCTCCCCTAA...GGCTGAGTCACCAGGATTTTGACAACTGAACTCAGGTCCTCTGCAACAGCAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR-3UTR TCA 90 bp | ATCAAACACAGAGCCTTAAGCATGTTAGGCAAGCACTCTACCACTGAGCCACAGCCCCATTCCCTGTGTTaGGTCCTAGCGATTATGATC | + |
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Preference number: 2 (lower is better) Translates to: IKHRALSMLGKHSTTEPQPHSLC*VLAIMI Trigger: GATCATAATCGCTAGGACTCAACACAGGGAATGGGG...CTGTGGCTCAGTGGTAGAGTGCTTGCCTAACATGCTTAAGGCTCTGTGTTTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR-3UTR TCA 90 bp | GTTTGCTGTTGCAGAGGACCTGAGTTCAGTTGTCAAAATCCTGGTGACTCAGCCGCATCTGCACTCATGTaGACATATTTACGTATGGAT | + |
|
Preference number: 2 (lower is better) Translates to: VCCCRGPEFSCQNPGDSAASALM*TYLRMD Trigger: ATCCATACGTAAATATGTTCACATGAGTGCAGATGC...GGCTGAGTCACCAGGATTTTGACAACTGAACTCAGGTCCTCTGCAACAGCAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCATTGTTCTTGGAGCTGGAGCAGTGGCTCAGTAGTTAAGGGCGTTTGCTGTGCTAGTGCTCATAATTaGTCTTATAAACAAGGATGT | + |
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Preference number: 2 (lower is better) Translates to: MHCSWSWSSGSVVKGVCCASAHN*SYKQGC Trigger: ACATCCTTGTTTATAAGACCAATTATGAGCACTAGC...ACAGCAAACGCCCTTAACTACTGAGCCACTGCTCCAGCTCCAAGAACAATGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR GCA 72 bp | CTGGTGACTCAGCCCTCTGTGGCTCTGAGGGTCTGGTaGCCTCCTCTGGCCTTTGTGGGCATCTGCACTCAT | + |
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Preference number: 3 (lower is better) Translates to: LVTQPSVALRVW*PPLAFVGICTH Trigger: ATGAGTGCAGATGCCCACAAAGGCCAGAGGAGGGCACCAGACCCTCAGAGCCACAGAGGGCTGAGTCACCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR GCA 72 bp | TGGAGCAGTGGCTCAGTAGTTAAGGGCGTTTGCTGTTaGAGAGGACCTGAGTTCAGTTGTCAAAATCCTGGT | + |
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Preference number: 3 (lower is better) Translates to: WSSGSVVKGVCC*RGPEFSCQNPG Trigger: ACCAGGATTTTGACAACTGAACTCAGGTCCTCTGCAACAGCAAACGCCCTTAACTACTGAGCCACTGCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR GCA 72 bp | TGGAGCTGGAGCAGTGGCTCAGTAGTTAAGGGCGTTTaGTGTTGCAGAGGACCTGAGTTCAGTTGTCAAAAT | + |
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Preference number: 3 (lower is better) Translates to: WSWSSGSVVKGV*CCRGPEFSCQN Trigger: ATTTTGACAACTGAACTCAGGTCCTCTGCAACAGCAAACGCCCTTAACTACTGAGCCACTGCTCCAGCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR TCA 72 bp | CAGAGCCTTAAGCATGTTAGGCAAGCACTCTACCACTaGGCCACAGTCCCAGAGACTGCTGTTTTCTTTAAC | + |
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Preference number: 3 (lower is better) Translates to: QSLKHVRQALYH*ATVPETAVFFN Trigger: GTTAAAGAAAACAGCAGTCTCTGGGACTGTGGCTCAGTGGTAGAGTGCTTGCCTAACATGCTTAAGGCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| 3UTR GCA 72 bp | AGGGTCTGGTGCCCTCCTCTGGCCTTTGTGGGCATCTaGACTCATGTGAACATATTTACGTATGGATACATA | + |
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Preference number: 3 (lower is better) Translates to: RVWCPPLAFVGI*THVNIFTYGYI Trigger: TATGTATCCATACGTAAATATGTTCACATGAGTGCAGATGCCCACAAAGGCCAGAGGAGGGCACCAGACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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| CDS-3UTR CCA 90 bp | AAACACAGAGCCTTAAGCATGTTAGGCAAGCACTCTACCACTGAGCCACAGTCCCTCTTTTCCTTTAGGTaGAAGTCATCGTCTTCATTC | + |
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Preference number: 4 (lower is better) Translates to: KHRALSMLGKHSTTEPQSLFSFR*KSSSSF Trigger: GAATGAAGACGATGACTTCCACCTAAAGGAAAAGAG...GGACTGTGGCTCAGTGGTAGAGTGCTTGCCTAACATGCTTAAGGCTCTGTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098713.5 |
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