Pregenerated sensors for SMIM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038059Ensembl transcript IDs: ENSMUST00000042710.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGCCGCCCTCGCCTCCTGTACCGGCAGCAGCTTCAGGGGTCTTTaGTTCTTCAAAGCTTCTCACTGCACAAGGTCTGTGTGGCTTCAC | + |
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Preference number: 1 (lower is better) Translates to: PAALASCTGSSFRGL*FFKASHCTRSVWLH Trigger: GTGAAGCCACACAGACCTTGTGCAGTGAGAAGCTTTGAAGAATCAAAGACCCCTGAAGCTGCTGCCGGTACAGGAGGCGAGGGCGGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR CCA 90 bp | CTAACAGAGATGTGCGGCCCAGTGCTGAAAGCAGGCCATCTTGCCTaGTGCATAAGGGCAAAGCTCTCCTTCAGGAGCAGGGATTGGCTG | + |
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Preference number: 1 (lower is better) Translates to: LTEMCGPVLKAGHLA*CIRAKLSFRSRDWL Trigger: CAGCCAATCCCTGCTCCTGAAGGAGAGCTTTGCCCTTATGCACCAGGCAAGATGGCCTGCTTTCAGCACTGGGCCGCACATCTCTGTTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR GCA 90 bp | GGATTGGCTGAGACGCTTCTGAAACTTTTACTCATCTCTCTCGCCTaGCATACTCGCTCTTTCTCCCAAACTAAGAAAAATGGAAAGAGT | + |
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Preference number: 1 (lower is better) Translates to: GLAETLLKLLLISLA*HTRSFSQTKKNGKS Trigger: ACTCTTTCCATTTTTCTTAGTTTGGGAGAAAGAGCGAGTATGGCAGGCGAGAGAGATGAGTAAAAGTTTCAGAAGCGTCTCAGCCAATCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR CCA 90 bp | TGTTCTTCAAAGAAAAGCTTCAGACACTCTCAGTGTGGCATTTATTaGAAACGGGATGCATACATCAATGAAGATCAGAGTAAGCAACGT | + |
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Preference number: 1 (lower is better) Translates to: CSSKKSFRHSQCGIY*KRDAYINEDQSKQR Trigger: ACGTTGCTTACTCTGATCTTCATTGATGTATGCATCCCGTTTCCAATAAATGCCACACTGAGAGTGTCTGAAGCTTTTCTTTGAAGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR TCA 90 bp | GGAAACGGGATGCATACATCAATGAAGATCAGAGTAAGCAACGTCTaGCATAATACTATCCCAAAATCTATGCTATCTTCTTACATAACA | + |
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Preference number: 1 (lower is better) Translates to: GNGMHTSMKIRVSNV*HNTIPKSMLSSYIT Trigger: TGTTATGTAAGAAGATAGCATAGATTTTGGGATAGTATTATGTCAGACGTTGCTTACTCTGATCTTCATTGATGTATGCATCCCGTTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCTCTTTCCCAGCCGCCCTCGCCTCCTGTACCGGCAGCAGCTTCAGGGGTCTAAGCTAAGGAGAGCCTaGGACTCAGAGTTAGGTCCC | + |
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Preference number: 2 (lower is better) Translates to: FLFPSRPRLLYRQQLQGSKLRRA*DSELGP Trigger: GGGACCTAACTCTGAGTCCCAGGCTCTCCTTAGCTT...AGACCCCTGAAGCTGCTGCCGGTACAGGAGGCGAGGGCGGCTGGGAAAGAGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR TCA 90 bp | CTGTACCGGCAGCAGCTTCAGGGGTCTTTGATTCTTCAAAGCTTCTCACTGCACGTCGTGACCCACGGCTaGAAGCTAAGGAGAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LYRQQLQGSLILQSFSLHVVTHG*KLRRAW Trigger: CCAGGCTCTCCTTAGCTTTCAGCCGTGGGTCACGAC...GTGCAGTGAGAAGCTTTGAAGAATCAAAGACCCCTGAAGCTGCTGCCGGTACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGGAGCTGAAATGCGGGGCAGAAAACTCAGCCGTCCTGCATTTCTAACCCGGGCGCTAACAGAGATGTaGGGCCCAGTGCTGAAAGCA | + |
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Preference number: 2 (lower is better) Translates to: KGAEMRGRKLSRPAFLTRALTEM*GPVLKA Trigger: TGCTTTCAGCACTGGGCCGCACATCTCTGTTAGCGC...CCGGGTTAGAAATGCAGGACGGCTGAGTTTTCTGCCCCGCATTTCAGCTCCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGGAGCTGAAATGCGGGGCAGAAAACTCAGCCGTCCTGCATTTCTAACCCGGGCAGGCCATCTTGCCTaGTGCATAAGGGCAAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: KGAEMRGRKLSRPAFLTRAGHLA*CIRAKL Trigger: GAGCTTTGCCCTTATGCACCAGGCAAGATGGCCTGC...CCGGGTTAGAAATGCAGGACGGCTGAGTTTTCTGCCCCGCATTTCAGCTCCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR CAA 90 bp | TCTTGCCTGGTGCATAAGGGCAAAGCTCTCCTTCAGGAGCAGGGATaGGCTGAGACGCTTCTGAAACTTTTACTCATCTCTCTCGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: SCLVHKGKALLQEQG*AETLLKLLLISLAC Trigger: GCAGGCGAGAGAGATGAGTAAAAGTTTCAGAAGCGTCTCAGCCAATCCCTGCTCCTGAAGGAGAGCTTTGCCCTTATGCACCAGGCAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAAGTTCAGTAGGTGTTCTTCAAAGAAAAGCTTCAGACACTCTCAGTGTGGCTGTGCGGCCCAGTGCTaGAAGCAGGCCATCTTGCCT | + |
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Preference number: 2 (lower is better) Translates to: SKFSRCSSKKSFRHSQCGCAAQC*KQAILP Trigger: AGGCAAGATGGCCTGCTTTCAGCACTGGGCCGCACA...GCCACACTGAGAGTGTCTGAAGCTTTTCTTTGAAGAACACCTACTGAACTTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR TCA 90 bp | AATAATAAGTACTTCAGACAGCTGTGGGGGCTAGAAGGGCTGGGTTGTAGCTCATGGCTGAGACGCTTCTaGAACTTTTACTCATCTCTC | + |
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Preference number: 2 (lower is better) Translates to: NNKYFRQLWGLEGLGCSSWLRRF*NFYSSL Trigger: GAGAGATGAGTAAAAGTTTCAGAAGCGTCTCAGCCA...TGAGCTACAACCCAGCCCTTCTAGCCCCCACAGCTGTCTGAAGTACTTATTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR GCA 90 bp | TTGAAGCTAAATGCCACAAAGCTCAGACAGGGGAAATCCTCTACTGTAGGGCACTCTGTGTGGCTTCACTaGTCTCAAACAGCTTTTACC | + |
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Preference number: 2 (lower is better) Translates to: LKLNATKLRQGKSSTVGHSVWLH*SQTAFT Trigger: GGTAAAAGCTGTTTGAGAGCAGTGAAGCCACACAGA...GTGCCCTACAGTAGAGGATTTCCCCTGTCTGAGCTTTGTGGCATTTAGCTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR CCA 90 bp | TCGCCTGCCATACTCGCTCTTTCTCCCAAACTAAGAAAAATGGAAAGAGTGTCAAAAACTCTGATTTGCTaGGGCTGGGGTGCACCATTT | + |
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Preference number: 2 (lower is better) Translates to: SPAILALSPKLRKMERVSKTLIC*GWGAPF Trigger: AAATGGTGCACCCCAGCCCCAGCAAATCAGAGTTTT...TGACACTCTTTCCATTTTTCTTAGTTTGGGAGAAAGAGCGAGTATGGCAGGCGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR GCA 90 bp | AAGTTCAGTAGGTGTTCTTCAAAGAAAAGCTTCAGACACTCTCAGTGTGGCATTATAAAGGAGCTGAAATaGGGGGCAGAAAACTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: KFSRCSSKKSFRHSQCGIIKELK*GAENSA Trigger: GGCTGAGTTTTCTGCCCCGCATTTCAGCTCCTTTAT...AATGCCACACTGAGAGTGTCTGAAGCTTTTCTTTGAAGAACACCTACTGAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR GCA 90 bp | AGTTCAAAGTTCAGTAGGTGTTCTTCAAAGAAAAGCTTCAGACACTCTCAGTGTAAGTTCCATCTCTGGTaGCGCAAAAGAGTAATAACA | + |
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Preference number: 2 (lower is better) Translates to: SSKFSRCSSKKSFRHSQCKFHLW*RKRVIT Trigger: TGTTATTACTCTTTTGCGGCACCAGAGATGGAACTT...ACACTGAGAGTGTCTGAAGCTTTTCTTTGAAGAACACCTACTGAACTTTGAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR CCA 72 bp | GGTGCACCATTTTGCTTGGCTCGGCATGAGGGGCACTaGCCAAAGTTCCTCTTTCCCAGCCGCCCTCGCCTC | + |
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Preference number: 3 (lower is better) Translates to: GAPFCLARHEGH*PKFLFPSRPRL Trigger: GAGGCGAGGGCGGCTGGGAAAGAGGAACTTTGGCCAGTGCCCCTCATGCCGAGCCAAGCAAAATGGTGCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR GCA 72 bp | AGAGATGTGCGGCCCAGTGCTGAAAGCAGGCCATCTTaGCTGGTGCATAAGGGCAAAGCTCTCCTTCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: RDVRPSAESRPS*LVHKGKALLQE Trigger: CTCCTGAAGGAGAGCTTTGCCCTTATGCACCAGGCAAGATGGCCTGCTTTCAGCACTGGGCCGCACATCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR CCA 72 bp | CACTGCTCTCAAACAGCTTTTACCTCCGCTGTCACGTaGTTCCCACAACCCTGTGAGGTAGGAAGGCAGGGG | + |
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Preference number: 3 (lower is better) Translates to: HCSQTAFTSAVT*FPQPCEVGRQG Trigger: CCCCTGCCTTCCTACCTCACAGGGTTGTGGGAACCACGTGACAGCGGAGGTAAAAGCTGTTTGAGAGCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR TCA 72 bp | CTCGCCTCCTGTACCGGCAGCAGCTTCAGGGGTCTTTaGTTCTTCAAAGCTTCTCACTGCACAAGGTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: LASCTGSSFRGL*FFKASHCTRSV Trigger: CACAGACCTTGTGCAGTGAGAAGCTTTGAAGAATCAAAGACCCCTGAAGCTGCTGCCGGTACAGGAGGCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR TCA 72 bp | CTCTCCTTCAGGAGCAGGGATTGGCTGAGACGCTTCTaGAACTTTTACTCATCTCTCTCGCCTGCCATACTC | + |
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Preference number: 3 (lower is better) Translates to: LSFRSRDWLRRF*NFYSSLSPAIL Trigger: GAGTATGGCAGGCGAGAGAGATGAGTAAAAGTTTCAGAAGCGTCTCAGCCAATCCCTGCTCCTGAAGGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR-3UTR CAA 90 bp | GCCAAAGTTCCATCTCTGGTGCCGCAAAAGAGTAATAACAAAAGCTTGAAGCTACTTCAGGAGCAGGGATaGGCTGAGACGCTTCTGAAA | + |
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Preference number: 3 (lower is better) Translates to: AKVPSLVPQKSNNKSLKLLQEQG*AETLLK Trigger: TTTCAGAAGCGTCTCAGCCAATCCCTGCTCCTGAAG...TAGCTTCAAGCTTTTGTTATTACTCTTTTGCGGCACCAGAGATGGAACTTTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR GCA 72 bp | GAGACGCTTCTGAAACTTTTACTCATCTCTCTCGCCTaGCATACTCGCTCTTTCTCCCAAACTAAGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: ETLLKLLLISLA*HTRSFSQTKKN Trigger: ATTTTTCTTAGTTTGGGAGAAAGAGCGAGTATGGCAGGCGAGAGAGATGAGTAAAAGTTTCAGAAGCGTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR TCA 72 bp | ATGCATACATCAATGAAGATCAGAGTAAGCAACGTCTaGCATAATACTATCCCAAAATCTATGCTATCTTCT | + |
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Preference number: 3 (lower is better) Translates to: MHTSMKIRVSNV*HNTIPKSMLSS Trigger: AGAAGATAGCATAGATTTTGGGATAGTATTATGTCAGACGTTGCTTACTCTGATCTTCATTGATGTATGCAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| CDS-3UTR CCA 90 bp | TCTGAAATCAGGATAGGGGCAAGACCTCTGCCCTTATCACACGCCATCCCGCCTAGCCCCGTTGAGAACTaGGTGAGTCCGCATTCGATA | + |
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Preference number: 4 (lower is better) Translates to: SEIRIGARPLPLSHAIPPSPVEN*VSPHSI Trigger: TATCGAATGCGGACTCACCCAGTTCTCAACGGGGCT...AGGCGGGATGGCGTGTGATAAGGGCAGAGGTCTTGCCCCTATCCTGATTTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| CDS-3UTR GCA 90 bp | GAGAGCCTGGGACTCAGAGTTAGGTCCCTTGATGACATCTACACTGTAGCCCAACAGATATCCAGGATGTaGTTGGGAAGCACGGCATCC | + |
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Preference number: 4 (lower is better) Translates to: ESLGLRVRSLDDIYTVAQQISRM*LGSTAS Trigger: GGATGCCGTGCTTCCCAAGCACATCCTGGATATCTG...TTGGGCTACAGTGTAGATGTCATCAAGGGACCTAACTCTGAGTCCCAGGCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| CDS-3UTR CCA 90 bp | GAGAGCCTGGGACTCAGAGTTAGGTCCCTTGATGACATCTACACTGTAGCCCAATATCCAGGATGTGCTTaGGAAGCACGGCATCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ESLGLRVRSLDDIYTVAQYPGCA*EARHPQ Trigger: CTGTGGATGCCGTGCTTCCCAAGCACATCCTGGATA...TTGGGCTACAGTGTAGATGTCATCAAGGGACCTAACTCTGAGTCCCAGGCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| 3UTR CAA 72 bp | GTGCATAAGGGCAAAGCTCTCCTTCAGGAGCAGGGATaGGCTGAGACGCTTCTGAAACTTTTACTCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: VHKGKALLQEQG*AETLLKLLLIS Trigger: AGAGATGAGTAAAAGTTTCAGAAGCGTCTCAGCCAATCCCTGCTCCTGAAGGAGAGCTTTGCCCTTATGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| CDS GCA 90 bp | ATGGTAGCCAGGATGATGAGGACTATGGCCCAGATATCCAGGATGTaGTTGGGAAGCACGGCATCCACAGGGGATTGGGTGATAGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: MVARMMRTMAQISRM*LGSTASTGDWVIAS Trigger: GGACGCTATCACCCAATCCCCTGTGGATGCCGTGCTTCCCAAGCACATCCTGGATATCTGGGCCATAGTCCTCATCATCCTGGCTACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| CDS-3UTR CAA 90 bp | GCTTCAGACACTCTCAGTGTGGCATTTATTGGAAACGGGATGCATACATCAATGATATCCAGGATGTGCTaGGGAAGCACGGCATCCACA | + |
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Preference number: 5 (lower is better) Translates to: ASDTLSVAFIGNGMHTSMISRMC*GSTAST Trigger: TGTGGATGCCGTGCTTCCCAAGCACATCCTGGATAT...CATTGATGTATGCATCCCGTTTCCAATAAATGCCACACTGAGAGTGTCTGAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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| CDS GCA 72 bp | AGGATGATGAGGACTATGGCCCAGATATCCAGGATGTaGTTGGGAAGCACGGCATCCACAGGGGATTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: RMMRTMAQISRM*LGSTASTGDWV Trigger: CACCCAATCCCCTGTGGATGCCGTGCTTCCCAAGCACATCCTGGATATCTGGGCCATAGTCCTCATCATCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042710.8 |
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