Pregenerated sensors for SMIM27 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028407

Ensembl transcript IDs: ENSMUST00000129758.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	TTCTCAGAGTGTTATCACTGTCCGTGTTACTGTCCAAAGGTTCTATaGTTTGAGACTAACAGTAAAAAGACAAATACTAAACAGAGCTAT	+
Preference number: 1 (lower is better) Translates to: FSECYHCPCYCPKVL*FETNSKKTNTKQSY Trigger: ATAGCTCTGTTTAGTATTTGTCTTTTTACTGTTAGTCTCAAATCATAGAACCTTTGGACAGTAACACGGACAGTGATAACACTCTGAGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
3UTR-3UTR TCA 90 bp	GAGCCGGGCGTGGGGGCGCACGCCTTTACTCCCAGCACTCGGGAGGCAGAGGCAGTTGTCCGATCATTTTaGAAAATTGGCATGTTAACG	+
Preference number: 2 (lower is better) Translates to: EPGVGAHAFTPSTREAEAVVRSF*KIGMLT Trigger: CGTTAACATGCCAATTTTTCAAAATGATCGGACAAC...TGCCTCTGCCTCCCGAGTGCTGGGAGTAAAGGCGTGCGCCCCCACGCCCGGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
3UTR-3UTR GCA 90 bp	CAGAGTGTTATCACTGTCCGTGTTACTGTCCAAAGGTTCTATGATTTGAGACTATTGAGTCTACATAGGTaGCATCTGAAGAAAAGAAGT	+
Preference number: 2 (lower is better) Translates to: QSVITVRVTVQRFYDLRLLSLHR*HLKKRS Trigger: ACTTCTTTTCTTCAGATGGCACCTATGTAGACTCAA...TAGTCTCAAATCATAGAACCTTTGGACAGTAACACGGACAGTGATAACACTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
3UTR TCA 72 bp	ACACATTTTAGTCACAGTGTTGTTTACATACTGATTTaGCATGAGGATGTGAAGTGTTTGAGCACTAGAATG	+
Preference number: 3 (lower is better) Translates to: THFSHSVVYILI*HEDVKCLSTRM Trigger: CATTCTAGTGCTCAAACACTTCACATCCTCATGTCAAATCAGTATGTAAACAACACTGTGACTAAAATGTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
CDS-3UTR GCA 90 bp	CACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGTCAGCCTGGTCTACAGAGAGCAAGACGATTaGAAGGAGCAACAGGGAGTA	+
Preference number: 4 (lower is better) Translates to: HSGGRGRRISEFKVSLVYREQDD*KEQQGV Trigger: TACTCCCTGTTGCTCCTTGCAATCGTCTTGCTCTCT...GTAGACCAGGCTGACCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
3UTR CAA 72 bp	AAAGGCCACACGCAAATTTGTATTGTGAATTTTACTTaGAGTCTACATAGGTGCCATCTGAAGAAAAGAAGT	+
Preference number: 4 (lower is better) Translates to: KGHTQICIVNFT*SLHRCHLKKRS Trigger: ACTTCTTTTCTTCAGATGGCACCTATGTAGACTCAAAGTAAAATTCACAATACAAATTTGCGTGTGGCCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
CDS GCA 90 bp	TACAGTCGATGCATAGATGACGAATCCCCAAGAGAGCAAGACGATTaGAAGGAGCAACAGGGAGTAAGTCCAGTCCAGGCTTCGGCGACT	+
Preference number: 5 (lower is better) Translates to: YSRCIDDESPREQDD*KEQQGVSPVQASAT Trigger: AGTCGCCGAAGCCTGGACTGGACTTACTCCCTGTTGCTCCTTGCAATCGTCTTGCTCTCTTGGGGATTCGTCATCTATGCATCGACTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129758.3
CDS GCA 72 bp	TGCATAGATGACGAATCCCCAAGAGAGCAAGACGATTaGAAGGAGCAACAGGGAGTAAGTCCAGTCCAGGCT	+
Preference number: 6 (lower is better) Translates to: CIDDESPREQDD*KEQQGVSPVQA Trigger: AGCCTGGACTGGACTTACTCCCTGTTGCTCCTTGCAATCGTCTTGCTCTCTTGGGGATTCGTCATCTATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129758.3