Pregenerated sensors for SMIM24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078439Ensembl transcript IDs: ENSMUST00000105322.9, ENSMUST00000118206.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGTTTTCAGACCCAGATGACACCAGTCCGGCTTCAGGTGGTGGCTaGAACTTGAGGTGTGTGGATGAAGCACCCCCAGGTGACAAGATG | + |
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Preference number: 1 (lower is better) Translates to: QFSDPDDTSPASGGG*NLRCVDEAPPGDKM Trigger: CATCTTGTCACCTGGGGGTGCTTCATCCACACACCTCAAGTTGCAGCCACCACCTGAAGCCGGACTGGTGTCATCTGGGTCTGAAAACTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR TCA 90 bp | CTCGTGGCCATTGCTGGAACTGCTTGCCCTGGAGAACTCAAGAACGGGAGACCCACACCAGGCCAGTGGTaGGTGTCAGGGGAAGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: LVAIAGTACPGELKNGRPTPGQW*VSGEGG Trigger: CCCACCTTCCCCTGACACTCACCACTGGCCTGGTGT...GGGTCTCCCGTTCTTGAGTTCTCCAGGGCAAGCAGTTCCAGCAATGGCCACGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR GCA 90 bp | CTCGTGGCCATTGCTGGAACTGCTTGCCCTGGAGAACTCAAGAACGGGAGACCCGTGACACCAGGAGCATaGCTGGAGGGGGCAGATTGG | + |
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Preference number: 2 (lower is better) Translates to: LVAIAGTACPGELKNGRPVTPGA*LEGADW Trigger: CCAATCTGCCCCCTCCAGGCATGCTCCTGGTGTCAC...GGGTCTCCCGTTCTTGAGTTCTCCAGGGCAAGCAGTTCCAGCAATGGCCACGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR TCA 90 bp | CCGGGTACAGCACTGGGGCTCAGAGACATAGGGGACAGTCAGGTGACACCAGGAGTGGTGGCTGCAACTTaGGGTGTGTGGATGAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: PGTALGLRDIGDSQVTPGVVAAT*GVWMKH Trigger: GTGCTTCATCCACACACCTCAAGTTGCAGCCACCAC...TCCTGGTGTCACCTGACTGTCCCCTATGTCTCTGAGCCCCAGTGCTGTACCCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGCACTGGGGCTCAGAGACATAGGGGACAGTCAGGTGACACCAGGAGCATGCGTGGTGGCTGCAACTTaGGGTGTGTGGATGAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: TALGLRDIGDSQVTPGACVVAAT*GVWMKH Trigger: GTGCTTCATCCACACACCTCAAGTTGCAGCCACCAC...GCATGCTCCTGGTGTCACCTGACTGTCCCCTATGTCTCTGAGCCCCAGTGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR TCA 90 bp | CTCGTGGCCATTGCTGGAACTGCTTGCCCTGGAGAACTCAAGAACGGGAGACCCGTTTTCAGACCCAGATaGCACCAGTCCGGCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: LVAIAGTACPGELKNGRPVFRPR*HQSGFR Trigger: CCTGAAGCCGGACTGGTGTCATCTGGGTCTGAAAAC...GGGTCTCCCGTTCTTGAGTTCTCCAGGGCAAGCAGTTCCAGCAATGGCCACGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR TCA 90 bp | CTCGTGGCCATTGCTGGAACTGCTTGCCCTGGAGAACTCAAGAACGGGAGACCCCAGAAGGGGGACAGATaGATAGGAGTGGACACCAGG | + |
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Preference number: 2 (lower is better) Translates to: LVAIAGTACPGELKNGRPQKGDR*IGVDTR Trigger: CCTGGTGTCCACTCCTATTCATCTGTCCCCCTTCTG...GGGTCTCCCGTTCTTGAGTTCTCCAGGGCAAGCAGTTCCAGCAATGGCCACGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR CCA 90 bp | CTCGTGGCCATTGCTGGAACTGCTTGCCCTGGAGAACTCAAGAACGGGAGACCCATGGGGCAGAGAGCTTaGACCATAGGGTGTCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: LVAIAGTACPGELKNGRPMGQRA*TIGCLS Trigger: GGAGAGACACCCTATGGTCCAAGCTCTCTGCCCCAT...GGGTCTCCCGTTCTTGAGTTCTCCAGGGCAAGCAGTTCCAGCAATGGCCACGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR CAA 90 bp | CCGGGTACAGCACTGGGGCTCAGAGACATAGGGGACAGTCAGGTGACACCAGGAGGTGGTGGCTGCAACTaGAGGTGTGTGGATGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: PGTALGLRDIGDSQVTPGGGGCN*RCVDEA Trigger: TGCTTCATCCACACACCTCAAGTTGCAGCCACCACC...TCCTGGTGTCACCTGACTGTCCCCTATGTCTCTGAGCCCCAGTGCTGTACCCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGAAGGGGGACAGATGAATAGGAGTGGACACCAGGCCAGTGGTGAGTGTCAGGGTGGTGGCTGCAACTaGAGGTGTGTGGATGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: AEGGQMNRSGHQASGECQGGGCN*RCVDEA Trigger: TGCTTCATCCACACACCTCAAGTTGCAGCCACCACC...CTGACACTCACCACTGGCCTGGTGTCCACTCCTATTCATCTGTCCCCCTTCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR TCA 72 bp | ATGACACCAGTCCGGCTTCAGGTGGTGGCTGCAACTTaGGGTGTGTGGATGAAGCACCCCCAGGTGACAAGA | + |
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Preference number: 3 (lower is better) Translates to: MTPVRLQVVAAT*GVWMKHPQVTR Trigger: TCTTGTCACCTGGGGGTGCTTCATCCACACACCTCAAGTTGCAGCCACCACCTGAAGCCGGACTGGTGTCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR TCA 72 bp | GAAGGTGGGGGTGAGTATGGAGGCCATAGGCAGAGCTaGCCTCCTCATATGAGGACAGTTTTCAGACCCAGA | + |
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Preference number: 3 (lower is better) Translates to: EGGGEYGGHRQS*PPHMRTVFRPR Trigger: TCTGGGTCTGAAAACTGTCCTCATATGAGGAGGTCAGCTCTGCCTATGGCCTCCATACTCACCCCCACCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS-3UTR TCA 90 bp | GCAGAAGGGGGACAGATGAATAGGAGTGGACACCAGGCCAGTGGTGAGTGTCAGCTTCAGGCGGCGCTCTaGGGCCTGCTGGGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: AEGGQMNRSGHQASGECQLQAAL*GLLGLS Trigger: GCTGAGGCCCAGCAGGCCTCAGAGCGCCGCCTGAAG...CTGACACTCACCACTGGCCTGGTGTCCACTCCTATTCATCTGTCCCCCTTCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS-3UTR GCA 90 bp | GACACCAGTCCGGCTTCAGGTGGTGGCTGCAACTTGAGGTGTGTGGATGAAGCACGGCGCTCTGAGGCCTaGTGGGCCTCAGCGGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: DTSPASGGGCNLRCVDEARRSEA*WASAGV Trigger: GACACCCGCTGAGGCCCAGCAGGCCTCAGAGCGCCG...TGCTTCATCCACACACCTCAAGTTGCAGCCACCACCTGAAGCCGGACTGGTGTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS-3UTR CCA 90 bp | GAGCATGCCTGGAGGGGGCAGATTGGATGTGAGAGAGGATGCAGAAGGGGGACACCTCTGCTCTGCCTTTaGCGCACCAGACACGATTGG | + |
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Preference number: 4 (lower is better) Translates to: EHAWRGQIGCERGCRRGTPLLCL*RTRHDW Trigger: CCAATCGTGTCTGGTGCGCCAAAGGCAGAGCAGAGG...TGTCCCCCTTCTGCATCCTCTCTCACATCCAATCTGCCCCCTCCAGGCATGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS-3UTR CCA 90 bp | AGCATGCCTGGAGGGGGCAGATTGGATGTGAGAGAGGATGCAGAAGGGGGACAGCCTCTGCTCTGCCTTTaGCGCACCAGACACGATTGG | + |
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Preference number: 4 (lower is better) Translates to: SMPGGGRLDVREDAEGGQPLLCL*RTRHDW Trigger: CCAATCGTGTCTGGTGCGCCAAAGGCAGAGCAGAGG...CTGTCCCCCTTCTGCATCCTCTCTCACATCCAATCTGCCCCCTCCAGGCATGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR CAA 72 bp | GATGACACCAGTCCGGCTTCAGGTGGTGGCTGCAACTaGAGGTGTGTGGATGAAGCACCCCCAGGTGACAAG | + |
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Preference number: 4 (lower is better) Translates to: DDTSPASGGGCN*RCVDEAPPGDK Trigger: CTTGTCACCTGGGGGTGCTTCATCCACACACCTCAAGTTGCAGCCACCACCTGAAGCCGGACTGGTGTCATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| 3UTR CAA 72 bp | ACTGCTTGCCCTGGAGAACTCAAGAACGGGAGACCCTaGGATGAGGTCCTCAGAAAAGAACCCGGTGACCAT | + |
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Preference number: 4 (lower is better) Translates to: TACPGELKNGRP*DEVLRKEPGDH Trigger: ATGGTCACCGGGTTCTTTTCTGAGGACCTCATCCAAGGGTCTCCCGTTCTTGAGTTCTCCAGGGCAAGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS-3UTR GCA 90 bp | CCGGGTACAGCACTGGGGCTCAGAGACATAGGGGACAGTCAGGTGACACCAGGATCCACCTTCTTCTTCTaGTTCTTGTCTGCTTTACTT | + |
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Preference number: 4 (lower is better) Translates to: PGTALGLRDIGDSQVTPGSTFFF*FLSALL Trigger: AAGTAAAGCAGACAAGAAGCAGAAGAAGAAGGTGGA...TCCTGGTGTCACCTGACTGTCCCCTATGTCTCTGAGCCCCAGTGCTGTACCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS-3UTR GCA 90 bp | GCAGAAGGGGGACAGATGAATAGGAGTGGACACCAGGCCAGTGGTGAGTGTCAGTCCACCTTCTTCTTCTaGTTCTTGTCTGCTTTACTT | + |
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Preference number: 4 (lower is better) Translates to: AEGGQMNRSGHQASGECQSTFFF*FLSALL Trigger: AAGTAAAGCAGACAAGAAGCAGAAGAAGAAGGTGGA...CTGACACTCACCACTGGCCTGGTGTCCACTCCTATTCATCTGTCCCCCTTCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS GCA 90 bp | GCAGCCAGGCCTACTAGCCAAGGCTTCAGGCGGCGCTCTGAGGCCTaGTGGGCCTCAGCGGGTGTCAGGAACAGTGTAGCCAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AARPTSQGFRRRSEA*WASAGVRNSVASSS Trigger: GCTGCTGCTGGCTACACTGTTCCTGACACCCGCTGAGGCCCAGCAGGCCTCAGAGCGCCGCCTGAAGCCTTGGCTAGTAGGCCTGGCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS CCA 90 bp | GCCAGGCCTACTAGCCAAGGCTTCAGGCGGCGCTCTGAGGCCTGCTaGGCCTCAGCGGGTGTCAGGAACAGTGTAGCCAGCAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ARPTSQGFRRRSEAC*ASAGVRNSVASSSS Trigger: GCTGCTGCTGCTGGCTACACTGTTCCTGACACCCGCTGAGGCCCAGCAGGCCTCAGAGCGCCGCCTGAAGCCTTGGCTAGTAGGCCTGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS-3UTR CAA 90 bp | GAGCATGCCTGGAGGGGGCAGATTGGATGTGAGAGAGGATGCAGAAGGGGGACAGCGCACCAGACACGATaGGCCAGCATGAGGATGAAG | + |
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Preference number: 5 (lower is better) Translates to: EHAWRGQIGCERGCRRGTAHQTR*ASMRMK Trigger: CTTCATCCTCATGCTGGCCAATCGTGTCTGGTGCGC...TGTCCCCCTTCTGCATCCTCTCTCACATCCAATCTGCCCCCTCCAGGCATGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS-3UTR CAA 90 bp | AGCATGCCTGGAGGGGGCAGATTGGATGTGAGAGAGGATGCAGAAGGGGGACAGTCTTGTCTGCTTTACTaGGCTGTGAGTTCTCGTTCA | + |
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Preference number: 5 (lower is better) Translates to: SMPGGGRLDVREDAEGGQSCLLY*AVSSRS Trigger: TGAACGAGAACTCACAGCCAAGTAAAGCAGACAAGA...CTGTCCCCCTTCTGCATCCTCTCTCACATCCAATCTGCCCCCTCCAGGCATGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS-3UTR CAA 90 bp | TCATATGAGGACAGTTTTCAGACCCAGATGACACCAGTCCGGCTTCAGGTGGTGTCTTGTCTGCTTTACTaGGCTGTGAGTTCTCGTTCA | + |
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Preference number: 5 (lower is better) Translates to: SYEDSFQTQMTPVRLQVVSCLLY*AVSSRS Trigger: TGAACGAGAACTCACAGCCAAGTAAAGCAGACAAGA...CACCACCTGAAGCCGGACTGGTGTCATCTGGGTCTGAAAACTGTCCTCATATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS-3UTR CAA 90 bp | TCCTCATATGAGGACAGTTTTCAGACCCAGATGACACCAGTCCGGCTTCAGGTGTACAAAGCTGTTTTCTaGCCTCTCTCCTCATCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SSYEDSFQTQMTPVRLQVYKAVF*PLSSSE Trigger: CTCAGATGAGGAGAGAGGCAAGAAAACAGCTTTGTA...CACCTGAAGCCGGACTGGTGTCATCTGGGTCTGAAAACTGTCCTCATATGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS GCA 72 bp | CCTACTAGCCAAGGCTTCAGGCGGCGCTCTGAGGCCTaGTGGGCCTCAGCGGGTGTCAGGAACAGTGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: PTSQGFRRRSEA*WASAGVRNSVA Trigger: GGCTACACTGTTCCTGACACCCGCTGAGGCCCAGCAGGCCTCAGAGCGCCGCCTGAAGCCTTGGCTAGTAGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS CAA 90 bp | GTAGCCTCCTCATCCTCTGCTCTGCCTTTGGCGCACCAGACACGATaGGCCAGCATGAGGATGAAGACTATAAACAGGAAGCCCACTACT | + |
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Preference number: 6 (lower is better) Translates to: VASSSSALPLAHQTR*ASMRMKTINRKPTT Trigger: AGTAGTGGGCTTCCTGTTTATAGTCTTCATCCTCATGCTGGCCAATCGTGTCTGGTGCGCCAAAGGCAGAGCAGAGGATGAGGAGGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS CAA 72 bp | TCATCCTCTGCTCTGCCTTTGGCGCACCAGACACGATaGGCCAGCATGAGGATGAAGACTATAAACAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: SSSALPLAHQTR*ASMRMKTINRK Trigger: CTTCCTGTTTATAGTCTTCATCCTCATGCTGGCCAATCGTGTCTGGTGCGCCAAAGGCAGAGCAGAGGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105322.9 |
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| CDS CAA 72 bp | TGTCCGCCCTTCCTGTCCACCTTCTTCTTCTGCTTCTaGTCTGCTTTACTTGGCTGTGAGTTCTCGTTCATA | + |
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Preference number: 6 (lower is better) Translates to: CPPFLSTFFFCF*SALLGCEFSFI Trigger: TATGAACGAGAACTCACAGCCAAGTAAAGCAGACAAGAAGCAGAAGAAGAAGGTGGACAGGAAGGGCGGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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| CDS TCA 72 bp | CTTCTTCTTCTGCTTCTTGTCTGCTTTACTTGGCTGTaGGTTCTCGTTCATAATGTGCTCCATTCTGAATGT | + |
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Preference number: 6 (lower is better) Translates to: LLLLLLVCFTWL*VLVHNVLHSEC Trigger: ACATTCAGAATGGAGCACATTATGAACGAGAACTCACAGCCAAGTAAAGCAGACAAGAAGCAGAAGAAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105322.9 ENSMUST00000118206.2 |
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