RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020270

Ensembl transcript IDs: ENSMUST00000020508.4, ENSMUST00000109365.8

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTaGCATCATCACCTCCTCTTCTGCTCCCCAGGTCCAGGCACCTGC +
Preference number: 1 (lower is better)
Translates to: HFIFSSLPGAASVRA*HHHLLFCSPGPGTC
Trigger: GCAGGTGCCTGGACCTGGGGAGCAGAAGAGGAGGTGATGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
3UTR-3UTR GCA 90 bp CCTCTCAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCCATCACCTCCTCTTCTaGTCCCCAGGTCCAGGCACC +
Preference number: 2 (lower is better)
Translates to: PLSHFIFSSLPGAASVRAHHLLF*SPGPGT
Trigger: GGTGCCTGGACCTGGGGAGCAGAAGAGGAGGTGATG...GGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTGAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
3UTR CCA 72 bp GTCACCTCTCAGTCACTTTATTTTCTCCAGCCTGCCTaGAGCAGCAAGTGTCAGAGCCTGACATCATCACCT +
Preference number: 3 (lower is better)
Translates to: VTSQSLYFLQPA*SSKCQSLTSSP
Trigger: AGGTGATGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTGAGAGGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR CCA 90 bp CATCACCTCCTCTTCTGCTCCCCAGGTCCAGGCACCTGCCCTTCACAAATGACCAGTGGTTGCAGTCCTTaGTCTGTCCTGACACTTCCC +
Preference number: 4 (lower is better)
Translates to: HHLLFCSPGPGTCPSQMTSGCSP*SVLTLP
Trigger: GGGAAGTGTCAGGACAGACCAAGGACTGCAACCACT...GGTCATTTGTGAAGGGCAGGTGCCTGGACCTGGGGAGCAGAAGAGGAGGTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR TCA 90 bp TCATCACCTCCTCTTCTGCTCCCCAGGTCCAGGCACCTGCCCTTCACAAATGACTTCCCAGCTGCTTCCTaGTATCCCCATACCCAGGTA +
Preference number: 4 (lower is better)
Translates to: SSPPLLLPRSRHLPFTNDFPAAS*YPHTQV
Trigger: TACCTGGGTATGGGGATATCAGGAAGCAGCTGGGAA...GTCATTTGTGAAGGGCAGGTGCCTGGACCTGGGGAGCAGAAGAGGAGGTGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR TCA 90 bp CAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACAGTCCTTGGTCTGTCCTaGCACTTCCCAGCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: QSLYFLQPAWSSKCQSLTVLGLS*HFPAAS
Trigger: GGAAGCAGCTGGGAAGTGTCAGGACAGACCAAGGAC...TGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR TCA 90 bp ACCTCTCAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCGGTAGAGCACCAAGATaGGCAGTGCCAACAGCGTCT +
Preference number: 4 (lower is better)
Translates to: TSQSLYFLQPAWSSKCQSGRAPR*AVPTAS
Trigger: AGACGCTGTTGGCACTGCTCATCTTGGTGCTCTACC...GCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTGAGAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR GCA 90 bp ACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACATCATCCTGCTTCCCGGCCTCTaGAACCCGTCTTCTGGATTG +
Preference number: 4 (lower is better)
Translates to: TLFSPACLEQQVSEPDIILLPGL*NPSSGL
Trigger: CAATCCAGAAGACGGGTTGCAGAGGCCGGGAAGCAG...GATGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR GCA 90 bp CAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACATTCAACTACCTCAGCTaGTTCCCGGCCTCTGCAACC +
Preference number: 4 (lower is better)
Translates to: QSLYFLQPAWSSKCQSLTFNYLS*FPASAT
Trigger: GGTTGCAGAGGCCGGGAAGCAGCTGAGGTAGTTGAA...TGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR TCA 90 bp CTCTCAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGCTGCTCCAGCTCTCTaGCCTCCTTCTCTAACTTCT +
Preference number: 4 (lower is better)
Translates to: LSVTLFSPACLEQQVSEPAAPAL*PPSLTS
Trigger: AGAAGTTAGAGAAGGAGGTCAGAGAGCTGGAGCAGC...AGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR TCA 90 bp CAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACAGCAGGTTCCTTGGTTTaGTATTCAAAGCCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: QSLYFLQPAWSSKCQSLTAGSLV*YSKPWG
Trigger: ACCCCAGGGCTTTGAATATCAAACCAAGGAACCTGC...TGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR TCA 90 bp CAGTCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACACTGTCATCACAGTGGTaGCTTCTCCTTCTCTGTTCA +
Preference number: 4 (lower is better)
Translates to: QSLYFLQPAWSSKCQSLTLSSQW*LLLLCS
Trigger: TGAACAGAGAAGGAGAAGTCACCACTGTGATGACAG...TGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR GCA 90 bp ACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACATCATCCACCAAGATGAGCAGTaGCAACAGCGTCTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: TLFSPACLEQQVSEPDIIHQDEQ*QQRLFP
Trigger: AGGAAACAGACGCTGTTGGCACTGCTCATCTTGGTG...GATGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR GCA 90 bp AAGTGTCAGAGCCTGACATCATCACCTCCTCTTCTGCTCCCCAGGTCCAGGCACTTCTCCAAAAAGCCATaGAAGTTTATCTTCAGCCAC +
Preference number: 4 (lower is better)
Translates to: KCQSLTSSPPLLLPRSRHFSKKP*KFIFSH
Trigger: GTGGCTGAAGATAAACTTGCATGGCTTTTTGGAGAA...GTGCCTGGACCTGGGGAGCAGAAGAGGAGGTGATGATGTCAGGCTCTGACACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR GCA 90 bp ACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACATCATCGATTCTGAAAGTGGTTaGAGTCCTTGGTCTGTCCTG +
Preference number: 4 (lower is better)
Translates to: TLFSPACLEQQVSEPDIIDSESG*SPWSVL
Trigger: CAGGACAGACCAAGGACTGCAACCACTTTCAGAATC...GATGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR CCA 90 bp ACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACATCATCCTTCAGCAGGTTCCTTaGTTTGATATTCAAAGCCCT +
Preference number: 4 (lower is better)
Translates to: TLFSPACLEQQVSEPDIILQQVP*FDIQSP
Trigger: AGGGCTTTGAATATCAAACCAAGGAACCTGCTGAAG...GATGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS GCA 90 bp TCTCCCAGAAGGGCATCGAGCCAGAATTCCAGGTCCCGCACCAGCTaGTCCAGCTCTCTGACCTCCTTCTCTAACTTCTCCAAAAAGCCA +
Preference number: 5 (lower is better)
Translates to: SPRRASSQNSRSRTS*SSSLTSFSNFSKKP
Trigger: TGGCTTTTTGGAGAAGTTAGAGAAGGAGGTCAGAGAGCTGGAGCAGCTGGTGCGGGACCTGGAATTCTGGCTCGATGCCCTTCTGGGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS TCA 90 bp AAGATGAGCAGTGCCAACAGCGTCTGTTTCCTGTCATCACAGTGGTaGCTTCTCCTTCTCTGTTCAACTACCTCAGCTGCTTCCCGGCCT +
Preference number: 5 (lower is better)
Translates to: KMSSANSVCFLSSQW*LLLLCSTTSAASRP
Trigger: AGGCCGGGAAGCAGCTGAGGTAGTTGAACAGAGAAGGAGAAGTCACCACTGTGATGACAGGAAACAGACGCTGTTGGCACTGCTCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020508.4
ENSMUST00000109365.8
CDS TCA 90 bp CATCGAGCCAGAATTCCAGGTCCCGCACCAGCTGCTCCAGCTCTCTaGCCTCCTTCTCTAACTTCTCCAAAAAGCCATGCAAGTTTATCT +
Preference number: 5 (lower is better)
Translates to: HRARIPGPAPAAPAL*PPSLTSPKSHASLS
Trigger: AGATAAACTTGCATGGCTTTTTGGAGAAGTTAGAGAAGGAGGTCAGAGAGCTGGAGCAGCTGGTGCGGGACCTGGAATTCTGGCTCGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS-3UTR CAA 90 bp TCACTTTATTTTCTCCAGCCTGCCTGGAGCAGCAAGTGTCAGAGCCTGACATCAAAGTGGTTGCAGTCCTaGGTCTGTCCTGACACTTCC +
Preference number: 5 (lower is better)
Translates to: SLYFLQPAWSSKCQSLTSKWLQS*VCPDTS
Trigger: GGAAGTGTCAGGACAGACCAAGGACTGCAACCACTT...TGATGTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS GCA 90 bp TGCTCCAGCTCTCTGACCTCCTTCTCTAACTTCTCCAAAAAGCCATaGAAGTTTATCTTCAGCCACTTCCTGAGGGTCCTTAATGGCTCT +
Preference number: 5 (lower is better)
Translates to: CSSSLTSFSNFSKKP*KFIFSHFLRVLNGS
Trigger: AGAGCCATTAAGGACCCTCAGGAAGTGGCTGAAGATAAACTTGCATGGCTTTTTGGAGAAGTTAGAGAAGGAGGTCAGAGAGCTGGAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS TCA 90 bp CTAACTTCTCCAAAAAGCCATGCAAGTTTATCTTCAGCCACTTCCTaGGGGTCCTTAATGGCTCTTCAGCAGGTTCCTTGGTTTGATATT +
Preference number: 5 (lower is better)
Translates to: LTSPKSHASLSSATS*GSLMALQQVPWFDI
Trigger: AATATCAAACCAAGGAACCTGCTGAAGAGCCATTAAGGACCCTCAGGAAGTGGCTGAAGATAAACTTGCATGGCTTTTTGGAGAAGTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS GCA 72 bp AGGGCATCGAGCCAGAATTCCAGGTCCCGCACCAGCTaGTCCAGCTCTCTGACCTCCTTCTCTAACTTCTCC +
Preference number: 6 (lower is better)
Translates to: RASSQNSRSRTS*SSSLTSFSNFS
Trigger: GGAGAAGTTAGAGAAGGAGGTCAGAGAGCTGGAGCAGCTGGTGCGGGACCTGGAATTCTGGCTCGATGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4
CDS TCA 72 bp TATGCTGGAGCACCTGCCTGGGGTGTCACAGGATTCTaGAAGTGGTTGCAGTCCTTGGTCTGTCCTGACACT +
Preference number: 6 (lower is better)
Translates to: YAGAPAWGVTGF*KWLQSLVCPDT
Trigger: AGTGTCAGGACAGACCAAGGACTGCAACCACTTTCAGAATCCTGTGACACCCCAGGCAGGTGCTCCAGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109365.8
CDS GCA 72 bp TATCCCCATACCCAGGTAGAGCACCAAGATGAGCAGTaGCAACAGCGTCTGTTTCCTGTCATCACAGTGGTG +
Preference number: 6 (lower is better)
Translates to: YPHTQVEHQDEQ*QQRLFPVITVV
Trigger: CACCACTGTGATGACAGGAAACAGACGCTGTTGGCACTGCTCATCTTGGTGCTCTACCTGGGTATGGGGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020508.4
ENSMUST00000109365.8
CDS TCA 72 bp AGTGCCAACAGCGTCTGTTTCCTGTCATCACAGTGGTaGCTTCTCCTTCTCTGTTCAACTACCTCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: SANSVCFLSSQW*LLLLCSTTSAA
Trigger: AGCAGCTGAGGTAGTTGAACAGAGAAGGAGAAGTCACCACTGTGATGACAGGAAACAGACGCTGTTGGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020508.4
ENSMUST00000109365.8
CDS TCA 72 bp CCAAAAAGCCATGCAAGTTTATCTTCAGCCACTTCCTaGGGGTCCTTAATGGCTCTTCAGCAGGTTCCTTGG +
Preference number: 6 (lower is better)
Translates to: PKSHASLSSATS*GSLMALQQVPW
Trigger: CCAAGGAACCTGCTGAAGAGCCATTAAGGACCCTCAGGAAGTGGCTGAAGATAAACTTGCATGGCTTTTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020508.4