Pregenerated sensors for SMIM22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096215Ensembl transcript IDs: ENSMUST00000178155.9, ENSMUST00000184439.8, ENSMUST00000185147.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGCATCACCTTCCGGGGCCTaGGGGAGGTGTTGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TLALLLSSSRTHAKGKLASPSGA*GRCCSS Trigger: GCTGCTGCAACACCTCCCCCAGGCCCCGGAAGGTGA...TGCTAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 |
||
| CDS-3UTR GCA 90 bp | AACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGCTCCTCTGCAGTGGCCTaGAGCTCCTGCCTCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: NIGSVTVIQQDPCQGQVSSSAVA*SSCLSS Trigger: GGAGCTGAGGCAGGAGCTGCAGGCCACTGCAGAGGA...GCTAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | GCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTTCCTCTGCAGTGGCCTaGAGCTCCTGCCTCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ANIGSVTVIQQDPCQGQVSSAVA*SSCLSS Trigger: GGAGCTGAGGCAGGAGCTGCAGGCCACTGCAGAGGA...AACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | GGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTGCCTGGGGGAGGTGTTaGAGCAGCAACAACAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GKHWLCYCHPAGPMPRASAWGRC*SSNNSS Trigger: GCTGCTGTTGTTGCTGCTGCAACACCTCCCCCAGGC...ACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR CCA 90 bp | TTTGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCATTTCCTTCCGGGGCCTaGGGGAGGTGTTGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FGKHWLCYCHPAGPMPRAFPSGA*GRCCSS Trigger: GCTGCTGCAACACCTCCCCCAGGCCCCGGAAGGAAA...TGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | GGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTGTGGCCTGCAGCTCCTaGCTCAGCTCCTCATCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: GKHWLCYCHPAGPMPRASVACSS*LSSSSE Trigger: TTCTGATGAGGAGCTGAGGCAGGAGCTGCAGGCCAC...ACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | TGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGGTGGCCTGCAGCTCCTaGCTCAGCTCCTCATCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: WQTLALLLSSSRTHAKGKVACSS*LSSSSE Trigger: TTCTGATGAGGAGCTGAGGCAGGAGCTGCAGGCCAC...CTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | TTGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGCCTGGGGGAGGTGTTaGAGCAGCAACAACAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LANIGSVTVIQQDPCQGQAWGRC*SSNNSS Trigger: GCTGCTGTTGTTGCTGCTGCAACACCTCCCCCAGGC...TTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | AACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGCGTGGCCTGCAGCTCCTaGCTCAGCTCCTCATCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: NIGSVTVIQQDPCQGQVSVACSS*LSSSSE Trigger: TTCTGATGAGGAGCTGAGGCAGGAGCTGCAGGCCAC...GCTAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | CAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGCCTGGGGGAGGTGTTaGAGCAGCAACAACAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QTLALLLSSSRTHAKGKLAWGRC*SSNNSS Trigger: GCTGCTGTTGTTGCTGCTGCAACACCTCCCCCAGGC...TAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | GGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTAGTTATCCACACCATTaGGCTTTTCCTTCCGGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: GKHWLCYCHPAGPMPRASSYPHH*AFPSGA Trigger: GGCCCCGGAAGGAAAAGCGCAATGGTGTGGATAACT...ACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185147.8 |
||
| CDS-3UTR TCA 90 bp | TGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGCAGTGCCCACAAATGTaGGAAAGACCACAAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: WQTLALLLSSSRTHAKGKQCPQM*ERPQRQ Trigger: CTGCCTTTGTGGTCTTTCTCACATTTGTGGGCACTG...CTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000185147.8 |
||
| CDS-3UTR GCA 90 bp | ACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGCAAGTTATCCACACCATTaGGCTTTTCCTTCCCGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TLALLLSSSRTHAKGKLASYPHH*AFPSRG Trigger: GCCCCGGGAAGGAAAAGCGCAATGGTGTGGATAACT...TGCTAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 |
||
| CDS-3UTR TCA 90 bp | GCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTCAGTGCCCACAAATGTaGGAAAGACCACAAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: ANIGSVTVIQQDPCQGQVQCPQM*ERPQRQ Trigger: CTGCCTTTGTGGTCTTTCTCACATTTGTGGGCACTG...AACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR TCA 90 bp | AACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGCCAGTGCCCACAAATGTaGGAAAGACCACAAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: NIGSVTVIQQDPCQGQVSQCPQM*ERPQRQ Trigger: CTGCCTTTGTGGTCTTTCTCACATTTGTGGGCACTG...GCTAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR CCA 90 bp | TGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGCAACAACAGCAGCAATaGACAAAGACCAGCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: WQTLALLLSSSRTHAKGKQQQQQ*TKTSNS Trigger: GCTGTTGCTGGTCTTTGTCCATTGCTGCTGTTGTTG...CTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000185147.8 |
||
| CDS-3UTR CCA 90 bp | GCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTCAACAACAGCAGCAATaGACAAAGACCAGCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: ANIGSVTVIQQDPCQGQVQQQQQ*TKTSNS Trigger: GCTGTTGCTGGTCTTTGTCCATTGCTGCTGTTGTTG...AACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR CCA 90 bp | CAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTACAACAACAGCAGCAATaGACAAAGACCAGCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: QTLALLLSSSRTHAKGKLQQQQQ*TKTSNS Trigger: GCTGTTGCTGGTCTTTGTCCATTGCTGCTGTTGTTG...TAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS GCA 90 bp | AGAAAGACCACAAAGGCAGCGACGTCCCATTCCGACTGGAAGAGCTaGCGGCTCCTCAGCCTCCCCAGTACTTCCTCTGCAGTGGCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: RKTTKAATSHSDWKS*RLLSLPSTSSAVAC Trigger: GCAGGCCACTGCAGAGGAAGTACTGGGGAGGCTGAGGAGCCGGCAGCTCTTCCAGTCGGAATGGGACGTCGCTGCCTTTGTGGTCTTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR CAA 90 bp | TGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGGGCCTGGGGGAGGTGTaGCAGCAGCAACAACAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: WQTLALLLSSSRTHAKGKGLGEV*QQQQQQ Trigger: CTGCTGTTGTTGCTGCTGCAACACCTCCCCCAGGCC...CTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000185147.8 |
||
| CDS CCA 90 bp | ACAAATGTGAGAAAGACCACAAAGGCAGCGACGTCCCATTCCGACTaGAAGAGCTGCCGGCTCCTCAGCCTCCCCAGTACTTCCTCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: TNVRKTTKAATSHSD*KSCRLLSLPSTSSA Trigger: TGCAGAGGAAGTACTGGGGAGGCTGAGGAGCCGGCAGCTCTTCCAGTCGGAATGGGACGTCGCTGCCTTTGTGGTCTTTCTCACATTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS-3UTR CAA 90 bp | TTTGGCAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAGGCCTGGGGGAGGTGTaGCAGCAGCAACAACAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: FGKHWLCYCHPAGPMPRAGLGEV*QQQQQQ Trigger: CTGCTGTTGTTGCTGCTGCAACACCTCCCCCAGGCC...TGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTGCCAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000178155.9 ENSMUST00000185147.8 |
||
| CDS-3UTR CAA 90 bp | CAAACATTGGCTCTGTTACTGTCATCCAGCAGGACCCATGCCAAGGGCAAGTTAGGCCTGGGGGAGGTGTaGCAGCAGCAACAACAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QTLALLLSSSRTHAKGKLGLGEV*QQQQQQ Trigger: CTGCTGTTGTTGCTGCTGCAACACCTCCCCCAGGCC...TAACTTGCCCTTGGCATGGGTCCTGCTGGATGACAGTAACAGAGCCAATGTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS TCA 90 bp | GGACAAAGACCAGCAACAGCAACAACAGCACAGTGCCCACAAATGTaGGAAAGACCACAAAGGCAGCGACGTCCCATTCCGACTGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: GQRPATATTAQCPQM*ERPQRQRRPIPTGR Trigger: TCTTCCAGTCGGAATGGGACGTCGCTGCCTTTGTGGTCTTTCTCACATTTGTGGGCACTGTGCTGTTGTTGCTGTTGCTGGTCTTTGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS GCA 72 bp | ACAAAGGCAGCGACGTCCCATTCCGACTGGAAGAGCTaGCGGCTCCTCAGCCTCCCCAGTACTTCCTCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: TKAATSHSDWKS*RLLSLPSTSSA Trigger: TGCAGAGGAAGTACTGGGGAGGCTGAGGAGCCGGCAGCTCTTCCAGTCGGAATGGGACGTCGCTGCCTTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS CCA 72 bp | AGAAAGACCACAAAGGCAGCGACGTCCCATTCCGACTaGAAGAGCTGCCGGCTCCTCAGCCTCCCCAGTACT | + |
|
Preference number: 6 (lower is better) Translates to: RKTTKAATSHSD*KSCRLLSLPST Trigger: AGTACTGGGGAGGCTGAGGAGCCGGCAGCTCTTCCAGTCGGAATGGGACGTCGCTGCCTTTGTGGTCTTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||
| CDS TCA 72 bp | CCAGCAACAGCAACAACAGCACAGTGCCCACAAATGTaGGAAAGACCACAAAGGCAGCGACGTCCCATTCCG | + |
|
Preference number: 6 (lower is better) Translates to: PATATTAQCPQM*ERPQRQRRPIP Trigger: CGGAATGGGACGTCGCTGCCTTTGTGGTCTTTCTCACATTTGTGGGCACTGTGCTGTTGTTGCTGTTGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178155.9 ENSMUST00000184439.8 ENSMUST00000185147.8 |
||