Pregenerated sensors for SMIM19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031534Ensembl transcript IDs: ENSMUST00000033935.16, ENSMUST00000163774.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGCAACAGGGAGCAAGACAGAGATGTCTCCTTGTCTAACAGGATaGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATCCGA | + |
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Preference number: 1 (lower is better) Translates to: TATGSKTEMSPCLTG*PPGTIWRQGKCGIR Trigger: TCGGATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTTAGACAAGGAGACATCTCTGTCTTGCTCCCTGTTGCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CCA 90 bp | ACAGAGATGTCTCCTTGTCTAACAGGATGGCCCCCAGGAACCATATaGAGGCAAGGGAAATGTGGGATCCGAAACAAAATAACAACTTTT | + |
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Preference number: 1 (lower is better) Translates to: TEMSPCLTGWPPGTI*RQGKCGIRNKITTF Trigger: AAAAGTTGTTATTTTGTTTCGGATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTTAGACAAGGAGACATCTCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR TCA 90 bp | ATGACACTGAAGAGCCTAGAAGGTCCTTGTGTGTCATACAAGTCTTaGAGTAAAGTTGACTCAAAGAGCCAGGAACAATCGTGGAAGCAA | + |
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Preference number: 1 (lower is better) Translates to: MTLKSLEGPCVSYKS*SKVDSKSQEQSWKQ Trigger: TTGCTTCCACGATTGTTCCTGGCTCTTTGAGTCAACTTTACTTCAAGACTTGTATGACACACAAGGACCTTCTAGGCTCTTCAGTGTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR GCA 90 bp | TATTCTGAAGAGACATTAACTCTAGGATTCTTGCTTCCAAAGATGTaGTTGTATTTTTCACTGTATCCTGGAGTCATCATTGATCTTCAA | + |
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Preference number: 1 (lower is better) Translates to: YSEETLTLGFLLPKM*LYFSLYPGVIIDLQ Trigger: TTGAAGATCAATGATGACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATCCTAGAGTTAATGTCTCTTCAGAATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CAA 90 bp | GCTGTAACCATCCACAGCAACAGGGAGCAAGACAGAGATGTCTCCTaGTCTAACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: AVTIHSNREQDRDVS*SNRMAPRNHMEARE Trigger: TTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTTAGACAAGGAGACATCTCTGTCTTGCTCCCTGTTGCTGTGGATGGTTACAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CCA 90 bp | CTGTATCCTGGAGTCATCATTGATCTTCAAAAGGATAAGTCCCCATCTCCAGTCCAACACAAGCAGGCTTaGGGGAGGGGCACAACTGGG | + |
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Preference number: 2 (lower is better) Translates to: LYPGVIIDLQKDKSPSPVQHKQA*GRGTTG Trigger: CCCAGTTGTGCCCCTCCCCCAAGCCTGCTTGTGTTG...GACTGGAGATGGGGACTTATCCTTTTGAAGATCAATGATGACTCCAGGATACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CCA 90 bp | GATTCTTGCTTCCAAAGATGTGCTTGTATTTTTCACTGTATCCTGGAGTCATCACAACACAAGCAGGCTTaGGGGAGGGGCACAACTGGG | + |
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Preference number: 2 (lower is better) Translates to: DSCFQRCACIFHCILESSQHKQA*GRGTTG Trigger: CCCAGTTGTGCCCCTCCCCCAAGCCTGCTTGTGTTG...TGATGACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR GCA 90 bp | ACCATCCACAGCAACAGGGAGCAAGACAGAGATGTCTCCTTGTCTAACAGGATGGCATTTTTGCACTTATaGAGGAAGTCCCAGAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: TIHSNREQDRDVSLSNRMAFLHL*RKSQKK Trigger: CTTCTTCTGGGACTTCCTGCATAAGTGCAAAAATGC...CATCCTGTTAGACAAGGAGACATCTCTGTCTTGCTCCCTGTTGCTGTGGATGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR TCA 90 bp | TTGTCTAACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATGCTGTAGAAATATTCTaGAGAGACATTAACTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: LSNRMAPRNHMEAREMWDAVEIF*RDINSR Trigger: CCTAGAGTTAATGTCTCTTCAGAATATTTCTACAGC...ATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTTAGACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR GCA 90 bp | CTGTATCCTGGAGTCATCATTGATCTTCAAAAGGATAAGTCCCCATCTCCAGTCGCATTTTTGCACTTATaGAGGAAGTCCCAGAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: LYPGVIIDLQKDKSPSPVAFLHL*RKSQKK Trigger: CTTCTTCTGGGACTTCCTGCATAAGTGCAAAAATGC...GACTGGAGATGGGGACTTATCCTTTTGAAGATCAATGATGACTCCAGGATACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CAA 90 bp | GAGCCAGGAACAATCGTGGAAGCAACACAAATTAGTCTGCTACAATaGTTAAATATCATTATAGACCACGTCCTAAGAGCAAACTACCCC | + |
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Preference number: 2 (lower is better) Translates to: EPGTIVEATQISLLQ*LNIIIDHVLRANYP Trigger: GGGGTAGTTTGCTCTTAGGACGTGGTCTATAATGATATTTAACAATTGTAGCAGACTAATTTGTGTTGCTTCCACGATTGTTCCTGGCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CAA 90 bp | TCTGAAGAGACATTAACTCTAGGATTCTTGCTTCCAAAGATGTGCTaGTATTTTTCACTGTATCCTGGAGTCATCATTGATCTTCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: SEETLTLGFLLPKMC*YFSLYPGVIIDLQK Trigger: CTTTTGAAGATCAATGATGACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATCCTAGAGTTAATGTCTCTTCAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | AACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATCCGAAAGAGCCTAGAAGGTCCTaGTGTGTCATACAAGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: NRMAPRNHMEAREMWDPKEPRRS*CVIQVL Trigger: CAAGACTTGTATGACACACAAGGACCTTCTAGGCTC...TTTCGGATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | CTGCTACAATTGTTAAATATCATTATAGACCACGTCCTAAGAGCAAACTACCCCGCAACACAAGCAGGCTaGGGGGAGGGGCACAACTGG | + |
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Preference number: 3 (lower is better) Translates to: LLQLLNIIIDHVLRANYPATQAG*GEGHNW Trigger: CCAGTTGTGCCCCTCCCCCAAGCCTGCTTGTGTTGC...GGGGTAGTTTGCTCTTAGGACGTGGTCTATAATGATATTTAACAATTGTAGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | GCTACAATTGTTAAATATCATTATAGACCACGTCCTAAGAGCAAACTACCCCAAGCAACACAAGCAGGCTaGGGGGAGGGGCACAACTGG | + |
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Preference number: 3 (lower is better) Translates to: ATIVKYHYRPRPKSKLPQATQAG*GEGHNW Trigger: CCAGTTGTGCCCCTCCCCCAAGCCTGCTTGTGTTGC...TTGGGGTAGTTTGCTCTTAGGACGTGGTCTATAATGATATTTAACAATTGTAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | AACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATCCGAAAATCCTGGAGTCATCATaGATCTTCAAAAGGATAAGT | + |
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Preference number: 3 (lower is better) Translates to: NRMAPRNHMEAREMWDPKILESS*IFKRIS Trigger: ACTTATCCTTTTGAAGATCAATGATGACTCCAGGAT...TTTCGGATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | TGTCTAACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATCCTTCCAAAGATGTGCTaGTATTTTTCACTGTATCCT | + |
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Preference number: 3 (lower is better) Translates to: CLTGWPPGTIWRQGKCGILPKMC*YFSLYP Trigger: AGGATACAGTGAAAAATACAAGCACATCTTTGGAAG...GATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTTAGACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | ACCATCCACAGCAACAGGGAGCAAGACAGAGATGTCTCCTTGTCTAACAGGATGTTAACTCTAGGATTCTaGCTTCCAAAGATGTGCTTG | + |
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Preference number: 3 (lower is better) Translates to: TIHSNREQDRDVSLSNRMLTLGF*LPKMCL Trigger: CAAGCACATCTTTGGAAGCAAGAATCCTAGAGTTAA...CATCCTGTTAGACAAGGAGACATCTCTGTCTTGCTCCCTGTTGCTGTGGATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR TCA 72 bp | AAGAGCCTAGAAGGTCCTTGTGTGTCATACAAGTCTTaGAGTAAAGTTGACTCAAAGAGCCAGGAACAATCG | + |
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Preference number: 3 (lower is better) Translates to: KSLEGPCVSYKS*SKVDSKSQEQS Trigger: CGATTGTTCCTGGCTCTTTGAGTCAACTTTACTTCAAGACTTGTATGACACACAAGGACCTTCTAGGCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR-3UTR CAA 90 bp | ACAAGTCTTGAAGTAAAGTTGACTCAAAGAGCCAGGAACAATCGTGGAAGCAACCTTCCAAAGATGTGCTaGTATTTTTCACTGTATCCT | + |
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Preference number: 3 (lower is better) Translates to: TSLEVKLTQRARNNRGSNLPKMC*YFSLYP Trigger: AGGATACAGTGAAAAATACAAGCACATCTTTGGAAG...GTTGCTTCCACGATTGTTCCTGGCTCTTTGAGTCAACTTTACTTCAAGACTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR GCA 72 bp | GAGACATTAACTCTAGGATTCTTGCTTCCAAAGATGTaGTTGTATTTTTCACTGTATCCTGGAGTCATCATT | + |
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Preference number: 3 (lower is better) Translates to: ETLTLGFLLPKM*LYFSLYPGVII Trigger: AATGATGACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATCCTAGAGTTAATGTCTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CAA 72 bp | ATCCACAGCAACAGGGAGCAAGACAGAGATGTCTCCTaGTCTAACAGGATGGCCCCCAGGAACCATATGGAG | + |
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Preference number: 4 (lower is better) Translates to: IHSNREQDRDVS*SNRMAPRNHME Trigger: CTCCATATGGTTCCTGGGGGCCATCCTGTTAGACAAGGAGACATCTCTGTCTTGCTCCCTGTTGCTGTGGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CCA 90 bp | TTATGCAGGAAGTCCCAGAAGAAGCAACACAAGCAGGCTTGGGGGAGGGGCACAGTCGGCCTGGCTTTGTaGCTGTTGATACTCATACTT | + |
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Preference number: 4 (lower is better) Translates to: LCRKSQKKQHKQAWGRGTVGLAL*LLILIL Trigger: AAGTATGAGTATCAACAGCCACAAAGCCAGGCCGAC...TGTGCCCCTCCCCCAAGCCTGCTTGTGTTGCTTCTTCTGGGACTTCCTGCATAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR TCA 90 bp | TTTGCACTTATGCAGGAAGTCCCAGAAGAAGCAACACAAGCAGGCTTGGGGGAGATACTCATACTTTCTTaGAACGGGATGCGCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: FALMQEVPEEATQAGLGEILILS*NGMRLH Trigger: GTGGAGGCGCATCCCGTTTCAAGAAAGTATGAGTAT...CTCCCCCAAGCCTGCTTGTGTTGCTTCTTCTGGGACTTCCTGCATAAGTGCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR TCA 90 bp | AACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATCCGAAATGGCTTTGTGGCTGTTaGTACTCATACTTTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: NRMAPRNHMEAREMWDPKWLCGC*YSYFLE Trigger: TTCAAGAAAGTATGAGTATCAACAGCCACAAAGCCA...TTTCGGATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR GCA 90 bp | TTTCTAAGCATTTTTGCACTTATGCAGGAAGTCCCAGAAGAAGCAACACAAGCATATTCCAATGAGAGCTaGACACTGTCGGCCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: FLSIFALMQEVPEEATQAYSNES*TLSAWL Trigger: AAGCCAGGCCGACAGTGTGCAGCTCTCATTGGAATA...TGCTTGTGTTGCTTCTTCTGGGACTTCCTGCATAAGTGCAAAAATGCTTAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR GCA 90 bp | TGTCATACAAGTCTTGAAGTAAAGTTGACTCAAAGAGCCAGGAACAATCGTGGATATTCCAATGAGAGCTaGACACTGTCGGCCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: CHTSLEVKLTQRARNNRGYSNES*TLSAWL Trigger: AAGCCAGGCCGACAGTGTGCAGCTCTCATTGGAATA...TCCACGATTGTTCCTGGCTCTTTGAGTCAACTTTACTTCAAGACTTGTATGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR TCA 90 bp | GATTCTTGCTTCCAAAGATGTGCTTGTATTTTTCACTGTATCCTGGAGTCATCAATACTCATACTTTCTTaGAACGGGATGCGCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: DSCFQRCACIFHCILESSILILS*NGMRLH Trigger: GTGGAGGCGCATCCCGTTTCAAGAAAGTATGAGTAT...TGATGACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CCA 90 bp | ACAAGTCTTGAAGTAAAGTTGACTCAAAGAGCCAGGAACAATCGTGGAAGCAACCTATCAAGTAAACATTaGTGGCTTCGTTCCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: TSLEVKLTQRARNNRGSNLSSKH*WLRSRL Trigger: AAGCCTGGAACGAAGCCACCAATGTTTACTTGATAG...GTTGCTTCCACGATTGTTCCTGGCTCTTTGAGTCAACTTTACTTCAAGACTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CCA 90 bp | TTTCTAAGCATTTTTGCACTTATGCAGGAAGTCCCAGAAGAAGCAACACAAGCATCAAGTAAACATTGGTaGCTTCGTTCCAGGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: FLSIFALMQEVPEEATQASSKHW*LRSRLH Trigger: ATGAAGCCTGGAACGAAGCCACCAATGTTTACTTGA...TGCTTGTGTTGCTTCTTCTGGGACTTCCTGCATAAGTGCAAAAATGCTTAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CCA 90 bp | CTAGGATTCTTGCTTCCAAAGATGTGCTTGTATTTTTCACTGTATCCTGGAGTCTCAAGTAAACATTGGTaGCTTCGTTCCAGGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: LGFLLPKMCLYFSLYPGVSSKHW*LRSRLH Trigger: ATGAAGCCTGGAACGAAGCCACCAATGTTTACTTGA...GACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATCCTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR TCA 90 bp | CTAGGATTCTTGCTTCCAAAGATGTGCTTGTATTTTTCACTGTATCCTGGAGTCTGGCTTTGTGGCTGTTaGTACTCATACTTTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: LGFLLPKMCLYFSLYPGVWLCGC*YSYFLE Trigger: TTCAAGAAAGTATGAGTATCAACAGCCACAAAGCCA...GACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATCCTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CCA 90 bp | GCTACAATTGTTAAATATCATTATAGACCACGTCCTAAGAGCAAACTACCCCAACTATCAAGTAAACATTaGTGGCTTCGTTCCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: ATIVKYHYRPRPKSKLPQLSSKH*WLRSRL Trigger: AAGCCTGGAACGAAGCCACCAATGTTTACTTGATAG...TTGGGGTAGTTTGCTCTTAGGACGTGGTCTATAATGATATTTAACAATTGTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CAA 72 bp | ACATTAACTCTAGGATTCTTGCTTCCAAAGATGTGCTaGTATTTTTCACTGTATCCTGGAGTCATCATTGAT | + |
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Preference number: 4 (lower is better) Translates to: TLTLGFLLPKMC*YFSLYPGVIID Trigger: ATCAATGATGACTCCAGGATACAGTGAAAAATACAAGCACATCTTTGGAAGCAAGAATCCTAGAGTTAATGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| 3UTR CAA 72 bp | ACAATCGTGGAAGCAACACAAATTAGTCTGCTACAATaGTTAAATATCATTATAGACCACGTCCTAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: TIVEATQISLLQ*LNIIIDHVLRA Trigger: TGCTCTTAGGACGTGGTCTATAATGATATTTAACAATTGTAGCAGACTAATTTGTGTTGCTTCCACGATTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS TCA 90 bp | TATTCCAATGAGAGCTGCACACTGTCGGCCTGGCTTTGTGGCTGTTaGTACTCATACTTTCTTGAAACGGGATGCGCCTCCACTTGTTGT | + |
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Preference number: 5 (lower is better) Translates to: YSNESCTLSAWLCGC*YSYFLETGCASTCC Trigger: ACAACAAGTGGAGGCGCATCCCGTTTCAAGAAAGTATGAGTATCAACAGCCACAAAGCCAGGCCGACAGTGTGCAGCTCTCATTGGAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CAA 90 bp | ACCATCCACAGCAACAGGGAGCAAGACAGAGATGTCTCCTTGTCTAACAGGATGCTGTGTCATAAAAGCTaGGCTCTGACAACATCCCTT | + |
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Preference number: 5 (lower is better) Translates to: TIHSNREQDRDVSLSNRMLCHKS*ALTTSL Trigger: AAGGGATGTTGTCAGAGCCAAGCTTTTATGACACAG...CATCCTGTTAGACAAGGAGACATCTCTGTCTTGCTCCCTGTTGCTGTGGATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS GCA 90 bp | TTCTTGAAACGGGATGCGCCTCCACTTGTTGTCTTAAGCGAATTCTaGTCACTGTGTCATAAAAGCTTGGCTCTGACAACATCCCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: FLKRDAPPLVVLSEF*SLCHKSLALTTSLL Trigger: CAGAAGGGATGTTGTCAGAGCCAAGCTTTTATGACACAGTGAGCAGAATTCGCTTAAGACAACAAGTGGAGGCGCATCCCGTTTCAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CAA 90 bp | TTGTCTAACAGGATGGCCCCCAGGAACCATATGGAGGCAAGGGAAATGTGGGATTTCCTTTTATTCCTCTaGGCATACATGAAGAGACCA | + |
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Preference number: 5 (lower is better) Translates to: LSNRMAPRNHMEAREMWDFLLFL*AYMKRP Trigger: TGGTCTCTTCATGTATGCCAAGAGGAATAAAAGGAA...ATCCCACATTTCCCTTGCCTCCATATGGTTCCTGGGGGCCATCCTGTTAGACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CAA 90 bp | CTGTATCCTGGAGTCATCATTGATCTTCAAAAGGATAAGTCCCCATCTCCAGTCTTCCTTTTATTCCTCTaGGCATACATGAAGAGACCA | + |
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Preference number: 5 (lower is better) Translates to: LYPGVIIDLQKDKSPSPVFLLFL*AYMKRP Trigger: TGGTCTCTTCATGTATGCCAAGAGGAATAAAAGGAA...GACTGGAGATGGGGACTTATCCTTTTGAAGATCAATGATGACTCCAGGATACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS-3UTR CAA 90 bp | CTGCTACAATTGTTAAATATCATTATAGACCACGTCCTAAGAGCAAACTACCCCCTGTGTCATAAAAGCTaGGCTCTGACAACATCCCTT | + |
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Preference number: 5 (lower is better) Translates to: LLQLLNIIIDHVLRANYPLCHKS*ALTTSL Trigger: AAGGGATGTTGTCAGAGCCAAGCTTTTATGACACAG...GGGGTAGTTTGCTCTTAGGACGTGGTCTATAATGATATTTAACAATTGTAGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS CAA 72 bp | GTCTTAAGCGAATTCTGCTCACTGTGTCATAAAAGCTaGGCTCTGACAACATCCCTTCTGTGGGAGGCACGC | + |
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Preference number: 6 (lower is better) Translates to: VLSEFCSLCHKS*ALTTSLLWEAR Trigger: GCGTGCCTCCCACAGAAGGGATGTTGTCAGAGCCAAGCTTTTATGACACAGTGAGCAGAATTCGCTTAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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| CDS GCA 72 bp | CGGGATGCGCCTCCACTTGTTGTCTTAAGCGAATTCTaGTCACTGTGTCATAAAAGCTTGGCTCTGACAACA | + |
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Preference number: 6 (lower is better) Translates to: RDAPPLVVLSEF*SLCHKSLALTT Trigger: TGTTGTCAGAGCCAAGCTTTTATGACACAGTGAGCAGAATTCGCTTAAGACAACAAGTGGAGGCGCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033935.16 ENSMUST00000163774.3 |
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