Pregenerated sensors for SMIM18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094500Ensembl transcript IDs: ENSMUST00000179364.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGGACTGCATATTTAATGAGGATACATACACAAGAGTaGACATTTCACATGGTTTCTTTTCTACTAGAAATC | + |
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Preference number: 3 (lower is better) Translates to: WTAYLMRIHTQE*TFHMVSFLLEI Trigger: GATTTCTAGTAGAAAAGAAACCATGTGAAATGTGCACTCTTGTGTATGTATCCTCATTAAATATGCAGTCCA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR CCA 90 bp | TGTAATAAAGTTTGGCCTCAGGAAATTTTCATTTTTCCCAGAAGAGGCAGAGGCCAAGGTACACAGAGGTaGTGGTTTCGTTCCAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: CNKVWPQEIFIFPRRGRGQGTQR*WFRSSG Trigger: GCCGCTGGAACGAAACCACCACCTCTGTGTACCTTG...GCCTCTGCCTCTTCTGGGAAAAATGAAAATTTCCTGAGGCCAAACTTTATTACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR TCA 90 bp | TCTTTTAGCCACTCAAGTCAGATCAGTTTTGTAATAAAGTTTGGCCTCAGGAAATGTCCATCATACTTCTaGGAGGATTCGGCTCGCTTT | + |
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Preference number: 4 (lower is better) Translates to: SFSHSSQISFVIKFGLRKCPSYF*EDSARF Trigger: AAAGCGAGCCGAATCCTCTCAGAAGTATGATGGACA...TTTCCTGAGGCCAAACTTTATTACAAAACTGATCTGACTTGAGTGGCTAAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR GCA 90 bp | AGCCACTCAAGTCAGATCAGTTTTGTAATAAAGTTTGGCCTCAGGAAATTTTCACACGGTTTTGTTCTTTaGACAGCAGCAGCAGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: SHSSQISFVIKFGLRKFSHGFVL*TAAAVK Trigger: CTTGACTGCTGCTGCTGTGCAAAGAACAAAACCGTG...TGAAAATTTCCTGAGGCCAAACTTTATTACAAAACTGATCTGACTTGAGTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR TCA 90 bp | TCACATGGTTTCTTTTCTACTAGAAATCTTTTAGCCACTCAAGTCAGATCAGTTCACTGTCACGTTTTCTaGTGTTGTCCATCATACTTC | + |
|
Preference number: 4 (lower is better) Translates to: SHGFFSTRNLLATQVRSVHCHVF*CCPSYF Trigger: GAAGTATGATGGACAACATCAGAAAACGTGACAGTG...AACTGATCTGACTTGAGTGGCTAAAAGATTTCTAGTAGAAAAGAAACCATGTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS GCA 90 bp | GAGAGGATTCGGCTCGCTTTTCAAGTCCTTCACGGTTTTGTTCTTTaGACAGCAGCAGCAGTCAAGTACCTCATAAAGGAAAGCCAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: ERIRLAFQVLHGFVL*TAAAVKYLIKESQH Trigger: GTGCTGGCTTTCCTTTATGAGGTACTTGACTGCTGCTGCTGTGCAAAGAACAAAACCGTGAAGGACTTGAAAAGCGAGCCGAATCCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR CAA 90 bp | TGTAATAAAGTTTGGCCTCAGGAAATTTTCATTTTTCCCAGAAGAGGCAGAGGCTCACGGTTTTGTTCTTaGCACAGCAGCAGCAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: CNKVWPQEIFIFPRRGRGSRFCS*HSSSSQ Trigger: TTGACTGCTGCTGCTGTGCAAAGAACAAAACCGTGA...GCCTCTGCCTCTTCTGGGAAAAATGAAAATTTCCTGAGGCCAAACTTTATTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR CAA 90 bp | TGTAATAAAGTTTGGCCTCAGGAAATTTTCATTTTTCCCAGAAGAGGCAGAGGCTCACGTTTTCTGATGTaGTCCATCATACTTCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: CNKVWPQEIFIFPRRGRGSRFLM*SIILLR Trigger: TCTCAGAAGTATGATGGACAACATCAGAAAACGTGA...GCCTCTGCCTCTTCTGGGAAAAATGAAAATTTCCTGAGGCCAAACTTTATTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS-3UTR CAA 90 bp | TCTTTTAGCCACTCAAGTCAGATCAGTTTTGTAATAAAGTTTGGCCTCAGGAAAGAAAGGGTGAATCTGTaGGACTTGAAATCCAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: SFSHSSQISFVIKFGLRKERVNL*DLKSKV Trigger: TACCTTGGATTTCAAGTCCAACAGATTCACCCTTTC...TTTCCTGAGGCCAAACTTTATTACAAAACTGATCTGACTTGAGTGGCTAAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS CAA 90 bp | GCAGGCAGTGTTCCAGTTGTCATGGAAAGGGTGAATCTGTTGGACTaGAAATCCAAGGTACACAGAGGTGGTGGTTTCGTTCCAGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: AGSVPVVMERVNLLD*KSKVHRGGGFVPAA Trigger: GGCCGCTGGAACGAAACCACCACCTCTGTGTACCTTGGATTTCAAGTCCAACAGATTCACCCTTTCCATGACAACTGGAACACTGCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS CAA 72 bp | GGCAGTGTTCCAGTTGTCATGGAAAGGGTGAATCTGTaGGACTTGAAATCCAAGGTACACAGAGGTGGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: GSVPVVMERVNL*DLKSKVHRGGG Trigger: ACCACCACCTCTGTGTACCTTGGATTTCAAGTCCAACAGATTCACCCTTTCCATGACAACTGGAACACTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS CAA 90 bp | GACAAAGCAGGCAGTGTTCCAGTTGTCATGGAAAGGGTGAATCTGTaGGACTTGAAATCCAAGGTACACAGAGGTGGTGGTTTCGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: DKAGSVPVVMERVNL*DLKSKVHRGGGFVP Trigger: TGGAACGAAACCACCACCTCTGTGTACCTTGGATTTCAAGTCCAACAGATTCACCCTTTCCATGACAACTGGAACACTGCCTGCTTTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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| CDS GCA 72 bp | CGGCTCGCTTTTCAAGTCCTTCACGGTTTTGTTCTTTaGACAGCAGCAGCAGTCAAGTACCTCATAAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: RLAFQVLHGFVL*TAAAVKYLIKE Trigger: TTCCTTTATGAGGTACTTGACTGCTGCTGCTGTGCAAAGAACAAAACCGTGAAGGACTTGAAAAGCGAGCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179364.3 |
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