Pregenerated sensors for SMIM17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093536Ensembl transcript IDs: ENSMUST00000160218.2, ENSMUST00000161855.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCGGGGGCGGGGGTGCGGGTGGGTTGGTTGCACGCATGGGAATATaGATGTGTTCACCCATGCGTGTGCTTGTGGAAATCAGAGCAAGG | + |
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Preference number: 1 (lower is better) Translates to: GGGGGAGGLVARMGI*MCSPMRVLVEIRAR Trigger: CCTTGCTCTGATTTCCACAAGCACACGCATGGGTGAACACATGCATATTCCCATGCGTGCAACCAACCCACCCGCACCCCCGCCCCCGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR GCA 90 bp | GGTTGGTTGCACGCATGGGAATATGCATGTGTTCACCCATGCGTGTaGTTGTGGAAATCAGAGCAAGGCATGGGATGTCTTCCTCCATTG | + |
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Preference number: 1 (lower is better) Translates to: GWLHAWEYACVHPCV*LWKSEQGMGCLPPL Trigger: CAATGGAGGAAGACATCCCATGCCTTGCTCTGATTTCCACAAGCACACGCATGGGTGAACACATGCATATTCCCATGCGTGCAACCAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR GCA 90 bp | GAGCTGCCTGATACGGTTGCCAGGAAGCAAACTGCAAGGGTGATATaGACTCTAAACCATGAAGCCATCTCTCCAGCCACAGTAAACTCT | + |
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Preference number: 1 (lower is better) Translates to: ELPDTVARKQTARVI*TLNHEAISPATVNS Trigger: AGAGTTTACTGTGGCTGGAGAGATGGCTTCATGGTTTAGAGTGCATATCACCCTTGCAGTTTGCTTCCTGGCAACCGTATCAGGCAGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR TCA 90 bp | TGCGTAGGTAAGGTAAATACTATAAAAGTGCACTGTTGCGTTAAATaGACGGATGTCCAATGCCCAGCAGCCGGGGAAGCTGCGCTACAT | + |
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Preference number: 1 (lower is better) Translates to: CVGKVNTIKVHCCVK*TDVQCPAAGEAALH Trigger: ATGTAGCGCAGCTTCCCCGGCTGCTGGGCATTGGACATCCGTTCATTTAACGCAACAGTGCACTTTTATAGTATTTACCTTACCTACGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCAAATAAATAACAAGGAAGCCACAACGGCGAGTTCAAAGGAAAAGAGTGATTCAAACTCCCTCTGCTaGCCTCCGCAGGCACTGCAC | + |
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Preference number: 2 (lower is better) Translates to: KQINNKEATTASSKEKSDSNSLC*PPQALH Trigger: GTGCAGTGCCTGCGGAGGCCAGCAGAGGGAGTTTGA...ATCACTCTTTTCCTTTGAACTCGCCGTTGTGGCTTCCTTGTTATTTATTTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR TCA 90 bp | AGTCTGGACACGTTCTTGGTCATAGTTGAAGCTTCACAAAATGTTTTGGAAGCACCCGCCTCCCAGTGCTaGGATTACAGCATGTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: SLDTFLVIVEASQNVLEAPASQC*DYSMCV Trigger: AACACACATGCTGTAATCTCAGCACTGGGAGGCGGG...TGCTTCCAAAACATTTTGTGAAGCTTCAACTATGACCAAGAACGTGTCCAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR TCA 90 bp | ATAAATAACAAGGAAGCCACAACGGCGAGTTCAAAGGAAAAGAGTGATGGGAAAGACAGTTCCTTAACGTaGCACAGGGCTCATGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: INNKEATTASSKEKSDGKDSSLT*HRAHVS Trigger: GGAGACATGAGCCCTGTGTCACGTTAAGGAACTGTC...TTTCCCATCACTCTTTTCCTTTGAACTCGCCGTTGTGGCTTCCTTGTTATTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CCA 90 bp | AGTCTGGACACGTTCTTGGTCATAGTTGAAGCTTCACAAAATGTTTTGGAAGCATTTGTTAAGGCTGGCTaGCCAGTGAGCCATAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: SLDTFLVIVEASQNVLEAFVKAG*PVSHSH Trigger: GTGGCTATGGCTCACTGGCCAGCCAGCCTTAACAAA...TGCTTCCAAAACATTTTGTGAAGCTTCAACTATGACCAAGAACGTGTCCAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR GCA 90 bp | TCAAACTGCTTTCTAAACATCATCTCATCTTCTGAGATTTCCCTCTCACAAATCGCTGGAGTTGTGAGCTaGCTGATACGGTTGCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: SNCFLNIISSSEISLSQIAGVVS*LIRLPG Trigger: TCCTGGCAACCGTATCAGGCAGCTCACAACTCCAGC...GATTTGTGAGAGGGAAATCTCAGAAGATGAGATGATGTTTAGAAAGCAGTTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGTGTGCTTGGTGTTCTACATAAGTCATGTAATCAGCAAGTTACAATAGTTTCCAACACCTTCTTCTaGCCTCCACAGGAACCAGGT | + |
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Preference number: 2 (lower is better) Translates to: AGVLGVLHKSCNQQVTIVSNTFF*PPQEPG Trigger: ACCTGGTTCCTGTGGAGGCCAGAAGAAGGTGTTGGA...AACTATTGTAACTTGCTGATTACATGACTTATGTAGAACACCAAGCACACCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CCA 90 bp | ATAAATAACAAGGAAGCCACAACGGCGAGTTCAAAGGAAAAGAGTGATGGGAAAAGGTGTTATGAAAAATaGGGCTGGGAAGATGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: INNKEATTASSKEKSDGKRCYEK*GWEDGS Trigger: GGAGCCATCTTCCCAGCCCCATTTTTCATAACACCT...TTTCCCATCACTCTTTTCCTTTGAACTCGCCGTTGTGGCTTCCTTGTTATTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR TCA 90 bp | AGTCTGGACACGTTCTTGGTCATAGTTGAAGCTTCACAAAATGTTTTGGAAGCAACACTGAAGGTGTTATaGAAAATGGGGCTGGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: SLDTFLVIVEASQNVLEATLKVL*KMGLGR Trigger: TCTTCCCAGCCCCATTTTTCATAACACCTTCAGTGT...TGCTTCCAAAACATTTTGTGAAGCTTCAACTATGACCAAGAACGTGTCCAGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CCA 90 bp | ATCTTAAACATCCTTCAAACAGTTATAAAGTCTGGACACGTTCTTGGTCATAGTGGGGAGGACTATGGGTaGGTATGCACATATGCATGC | + |
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Preference number: 2 (lower is better) Translates to: ILNILQTVIKSGHVLGHSGEDYG*VCTYAC Trigger: GCATGCATATGTGCATACCCACCCATAGTCCTCCCC...ACTATGACCAAGAACGTGTCCAGACTTTATAACTGTTTGAAGGATGTTTAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR GCA 90 bp | TCAAACTGCTTTCTAAACATCATCTCATCTTCTGAGATTTCCCTCTCACAAATCGACTATGGGTGGGTATaGACATATGCATGCAATGTC | + |
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Preference number: 2 (lower is better) Translates to: SNCFLNIISSSEISLSQIDYGWV*TYACNV Trigger: GACATTGCATGCATATGTGCATACCCACCCATAGTC...GATTTGTGAGAGGGAAATCTCAGAAGATGAGATGATGTTTAGAAAGCAGTTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTTAAACATCCTTCAAACAGTTATAAAGTCTGGACACGTTCTTGGTCATAGTGTTCACCCATGCGTGTaGTTGTGGAAATCAGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: ILNILQTVIKSGHVLGHSVHPCV*LWKSEQ Trigger: TTGCTCTGATTTCCACAAGCACACGCATGGGTGAAC...ACTATGACCAAGAACGTGTCCAGACTTTATAACTGTTTGAAGGATGTTTAAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAATAAATAACAAGGAAGCCACAACGGCGAGTTCAAAGGAAAAGAGTGATCATCATCTCATCTTCTaGGATTTCCCTCTCACAAAT | + |
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Preference number: 2 (lower is better) Translates to: KQINNKEATTASSKEKSDHHLIF*DFPLTN Trigger: ATTTGTGAGAGGGAAATCTCAGAAGATGAGATGATG...ATCACTCTTTTCCTTTGAACTCGCCGTTGTGGCTTCCTTGTTATTTATTTGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGGTGTGCTTGGTGTTCTACATAAGTCATGTAATCAGCAAGTTACAATAGTTTTTAAGGGTACTTACTaGTCTTGTAGAGAACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: AGVLGVLHKSCNQQVTIVFKGTY*SCREPE Trigger: CTCTGGTTCTCTACAAGAGCAGTAAGTACCCTTAAA...AACTATTGTAACTTGCTGATTACATGACTTATGTAGAACACCAAGCACACCAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR CCA 72 bp | GCGGGGGCGGGGGTGCGGGTGGGTTGGTTGCACGCATaGGAATATGCATGTGTTCACCCATGCGTGTGCTTG | + |
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Preference number: 3 (lower is better) Translates to: AGAGVRVGWLHA*EYACVHPCVCL Trigger: CAAGCACACGCATGGGTGAACACATGCATATTCCCATGCGTGCAACCAACCCACCCGCACCCCCGCCCCCGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR GCA 72 bp | TGCCTAGGGGCAGGGTCTCTCACTAAACTAGAACCTTaGCCTTTTGTTAAGGCTGGCTGGCCAGTGAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: CLGAGSLTKLEP*PFVKAGWPVSH Trigger: ATGGCTCACTGGCCAGCCAGCCTTAACAAAAGGGCAAGGTTCTAGTTTAGTGAGAGACCCTGCCCCTAGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR CCA 72 bp | ACCCATGCGTGTGCTTGTGGAAATCAGAGCAAGGCATaGGATGTCTTCCTCCATTGCTTTCCACCCCATTGC | + |
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Preference number: 3 (lower is better) Translates to: THACACGNQSKA*DVFLHCFPPHC Trigger: GCAATGGGGTGGAAAGCAATGGAGGAAGACATCCCATGCCTTGCTCTGATTTCCACAAGCACACGCATGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR GCA 72 bp | GATACGGTTGCCAGGAAGCAAACTGCAAGGGTGATATaGACTCTAAACCATGAAGCCATCTCTCCAGCCACA | + |
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Preference number: 3 (lower is better) Translates to: DTVARKQTARVI*TLNHEAISPAT Trigger: TGTGGCTGGAGAGATGGCTTCATGGTTTAGAGTGCATATCACCCTTGCAGTTTGCTTCCTGGCAACCGTATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR GCA 72 bp | CACGCATGGGAATATGCATGTGTTCACCCATGCGTGTaGTTGTGGAAATCAGAGCAAGGCATGGGATGTCTT | + |
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Preference number: 3 (lower is better) Translates to: HAWEYACVHPCV*LWKSEQGMGCL Trigger: AAGACATCCCATGCCTTGCTCTGATTTCCACAAGCACACGCATGGGTGAACACATGCATATTCCCATGCGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR GCA 72 bp | AGCTATAGACACAGCTCAGCATTTAAGGGTACTTACTaGTCTTGTAGAGAACCAGAGCTCTGTTCCCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: SYRHSSAFKGTY*SCREPELCSQH Trigger: GTGCTGGGAACAGAGCTCTGGTTCTCTACAAGAGCAGTAAGTACCCTTAAATGCTGAGCTGTGTCTATAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR TCA 72 bp | AAGGTAAATACTATAAAAGTGCACTGTTGCGTTAAATaGACGGATGTCCAATGCCCAGCAGCCGGGGAAGCT | + |
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Preference number: 3 (lower is better) Translates to: KVNTIKVHCCVK*TDVQCPAAGEA Trigger: AGCTTCCCCGGCTGCTGGGCATTGGACATCCGTTCATTTAACGCAACAGTGCACTTTTATAGTATTTACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGTGTGCTTGGTGTTCTACATAAGTCATGTAATCAGCAAGTTACAATAGTTCTAAACCACTGGACTTaGAAGCATTTACTAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: AGVLGVLHKSCNQQVTIVLNHWT*KHLLGL Trigger: CAGTCCTAGTAAATGCTTCAAAGTCCAGTGGTTTAG...AACTATTGTAACTTGCTGATTACATGACTTATGTAGAACACCAAGCACACCAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR-3UTR CAA 90 bp | ACTCTTTTAATCTGCCAAGGACCTGATACTTCTCAAGCTACAGAAATTATTCAAAACATTGATCCTAAGTaGCACACTTTTCAGCTTCTC | + |
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Preference number: 3 (lower is better) Translates to: TLLICQGPDTSQATEIIQNIDPK*HTFQLL Trigger: GAGAAGCTGAAAAGTGTGCAACTTAGGATCAATGTT...TTGAATAATTTCTGTAGCTTGAGAAGTATCAGGTCCTTGGCAGATTAAAAGAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS-3UTR CCA 90 bp | CTCAAACTCCCTCTGCTGGCCTCCGCAGGCACTGCACTCACAATAGCACATACACACTCCACAAAGCCCTaGGAGTCCTCTGACTCGTCA | + |
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Preference number: 4 (lower is better) Translates to: LKLPLLASAGTALTIAHTHSTKP*ESSDSS Trigger: TGACGAGTCAGAGGACTCCCAGGGCTTTGTGGAGTG...TGTATGTGCTATTGTGAGTGCAGTGCCTGCGGAGGCCAGCAGAGGGAGTTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| 3UTR CAA 72 bp | ATGTGGATCCCGGGATTCAAACTGAGGTCCCCATGTTaGCAGAGCAAGCGCTCTTACCCACTGAGCCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: MWIPGFKLRSPC*QSKRSYPLSLA Trigger: TGCTAGGCTCAGTGGGTAAGAGCGCTTGCTCTGCAAACATGGGGACCTCAGTTTGAATCCCGGGATCCACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS-3UTR CCA 90 bp | CCATCTGTAACTCCAATTTTAAGAGATCCAACACCTTCTTCTGGCCTCCACAGGCAGCCTCCCAGTCCTTaGGGAAGGTGGAGTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: PSVTPILRDPTPSSGLHRQPPSP*GRWSGM Trigger: CATGCCACTCCACCTTCCCCAAGGACTGGGAGGCTG...CCTGTGGAGGCCAGAAGAAGGTGTTGGATCTCTTAAAATTGGAGTTACAGATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS-3UTR TCA 90 bp | CCATCTGTAACTCCAATTTTAAGAGATCCAACACCTTCTTCTGGCCTCCACAGGACTGAGCTCCATTCCTaGGATAGCCCAGTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PSVTPILRDPTPSSGLHRTELHS*DSPVSW Trigger: CCAAGAGACTGGGCTATCTCAGGAATGGAGCTCAGT...CCTGTGGAGGCCAGAAGAAGGTGTTGGATCTCTTAAAATTGGAGTTACAGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS-3UTR TCA 90 bp | ATAAATAACAAGGAAGCCACAACGGCGAGTTCAAAGGAAAAGAGTGATGGGAAAGCCCTGGGAGTCCTCTaGCTCGTCATCTTCTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: INNKEATTASSKEKSDGKALGVL*LVIFFY Trigger: GTAGAAGAAGATGACGAGTCAGAGGACTCCCAGGGC...TTTCCCATCACTCTTTTCCTTTGAACTCGCCGTTGTGGCTTCCTTGTTATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS-3UTR CCA 90 bp | TCAAACTGCTTTCTAAACATCATCTCATCTTCTGAGATTTCCCTCTCACAAATCAGTCCTTGGGGAAGGTaGAGTGGCATGGCTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: SNCFLNIISSSEISLSQISPWGR*SGMASP Trigger: GGGAGAAGCCATGCCACTCCACCTTCCCCAAGGACT...GATTTGTGAGAGGGAAATCTCAGAAGATGAGATGATGTTTAGAAAGCAGTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS CCA 90 bp | GCCCAGTCTCTTGGGAGGACAGATCTTTCTCATCACTGTCACAGCTaGAGGCCCCAACCTCCACAGCCTCCCAGTCCTTGGGGAAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: AQSLGRTDLSHHCHS*RPQPPQPPSPWGRW Trigger: CCACCTTCCCCAAGGACTGGGAGGCTGTGGAGGTTGGGGCCTCCAGCTGTGACAGTGATGAGAAAGATCTGTCCTCCCAAGAGACTGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS-3UTR CAA 90 bp | CTCAAACTCCCTCTGCTGGCCTCCGCAGGCACTGCACTCACAATAGCACATACAACAGCCTCCCAGTCCTaGGGGAAGGTGGAGTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: LKLPLLASAGTALTIAHTTASQS*GKVEWH Trigger: ATGCCACTCCACCTTCCCCAAGGACTGGGAGGCTGT...TGTATGTGCTATTGTGAGTGCAGTGCCTGCGGAGGCCAGCAGAGGGAGTTTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS CCA 90 bp | ACGATGGTTGTTTGCTGTGGAGCCTTGGACCACTCCACAAAGCCCTaGGAGTCCTCTGACTCGTCATCTTCTTCTACTGAGCTCCATTCC | + |
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Preference number: 5 (lower is better) Translates to: TMVVCCGALDHSTKP*ESSDSSSSSTELHS Trigger: GGAATGGAGCTCAGTAGAAGAAGATGACGAGTCAGAGGACTCCCAGGGCTTTGTGGAGTGGTCCAAGGCTCCACAGCAAACAACCATCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS TCA 90 bp | TGGGAGTCCTCTGACTCGTCATCTTCTTCTACTGAGCTCCATTCCTaGGATAGCCCAGTCTCTTGGGAGGACAGATCTTTCTCATCACTG | + |
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Preference number: 5 (lower is better) Translates to: WESSDSSSSSTELHS*DSPVSWEDRSFSSL Trigger: CAGTGATGAGAAAGATCTGTCCTCCCAAGAGACTGGGCTATCTCAGGAATGGAGCTCAGTAGAAGAAGATGACGAGTCAGAGGACTCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS CCA 90 bp | CAGTTAATACCAAGAATAAGAACAGCACACACACTACCAACACGATaGTTGTTTGCTGTGGAGCCTTGGACCACTCCACAAAGCCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: QLIPRIRTAHTLPTR*LFAVEPWTTPQSPG Trigger: CCCAGGGCTTTGTGGAGTGGTCCAAGGCTCCACAGCAAACAACCATCGTGTTGGTAGTGTGTGTGCTGTTCTTATTCTTGGTATTAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS-3UTR CAA 90 bp | ATAAATAACAAGGAAGCCACAACGGCGAGTTCAAAGGAAAAGAGTGATGGGAAAGTTTGCTGTGGAGCCTaGGACCACTCCACAAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: INNKEATTASSKEKSDGKVCCGA*DHSTKP Trigger: GGGCTTTGTGGAGTGGTCCAAGGCTCCACAGCAAAC...TTTCCCATCACTCTTTTCCTTTGAACTCGCCGTTGTGGCTTCCTTGTTATTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160218.2 |
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| CDS CCA 72 bp | GTTTGCTGTGGAGCCTTGGACCACTCCACAAAGCCCTaGGAGTCCTCTGACTCGTCATCTTCTTCTACTGAG | + |
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Preference number: 6 (lower is better) Translates to: VCCGALDHSTKP*ESSDSSSSSTE Trigger: CTCAGTAGAAGAAGATGACGAGTCAGAGGACTCCCAGGGCTTTGTGGAGTGGTCCAAGGCTCCACAGCAAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS CAA 90 bp | AACAGCACACACACTACCAACACGATGGTTGTTTGCTGTGGAGCCTaGGACCACTCCACAAAGCCCTGGGAGTCCTCTGACTCGTCATCT | + |
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Preference number: 6 (lower is better) Translates to: NSTHTTNTMVVCCGA*DHSTKPWESSDSSS Trigger: AGATGACGAGTCAGAGGACTCCCAGGGCTTTGTGGAGTGGTCCAAGGCTCCACAGCAAACAACCATCGTGTTGGTAGTGTGTGTGCTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS TCA 72 bp | TCTGACTCGTCATCTTCTTCTACTGAGCTCCATTCCTaGGATAGCCCAGTCTCTTGGGAGGACAGATCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SDSSSSSTELHS*DSPVSWEDRSF Trigger: GAAAGATCTGTCCTCCCAAGAGACTGGGCTATCTCAGGAATGGAGCTCAGTAGAAGAAGATGACGAGTCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS CCA 72 bp | CCAAGAATAAGAACAGCACACACACTACCAACACGATaGTTGTTTGCTGTGGAGCCTTGGACCACTCCACAA | + |
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Preference number: 6 (lower is better) Translates to: PRIRTAHTLPTR*LFAVEPWTTPQ Trigger: TTGTGGAGTGGTCCAAGGCTCCACAGCAAACAACCATCGTGTTGGTAGTGTGTGTGCTGTTCTTATTCTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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| CDS CAA 90 bp | TTAATACCAAGAATAAGAACAGCACACACACTACCAACACGATGGTaGTTTGCTGTGGAGCCTTGGACCACTCCACAAAGCCCTGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: LIPRIRTAHTLPTRW*FAVEPWTTPQSPGS Trigger: ACTCCCAGGGCTTTGTGGAGTGGTCCAAGGCTCCACAGCAAACAACCATCGTGTTGGTAGTGTGTGTGCTGTTCTTATTCTTGGTATTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160218.2 ENSMUST00000161855.8 |
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