Pregenerated sensors for SMIM14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037822Ensembl transcript IDs: ENSMUST00000040532.12, ENSMUST00000121661.8, ENSMUST00000139122.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGATACCCTGGAGTTACAGACAGCTGTGAGCTGCCGTGTGGTGGCTaGGAAATGAGCCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCGTA | + |
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Preference number: 1 (lower is better) Translates to: GYPGVTDSCELPCGG*EMSLGPLEEQPVLV Trigger: TACGAGCACTGGCTGCTCTTCCAGAGGACCCAGGCTCATTTCCCAGCCACCACACGGCAGCTCACAGCTGTCTGTAACTCCAGGGTATCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR TCA 90 bp | ACCTTGATAACAAAATATGTTCTGGTCCGGACAAATCCCCTGCAGTaGTTCCTAGGAGGAGAGAGTCCAGGCGTCCAGGCCGCCCAGGCC | + |
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Preference number: 1 (lower is better) Translates to: TLITKYVLVRTNPLQ*FLGGESPGVQAAQA Trigger: GGCCTGGGCGGCCTGGACGCCTGGACTCTCTCCTCCTAGGAATCACTGCAGGGGATTTGTCCGGACCAGAACATATTTTGTTATCAAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR GCA 90 bp | GAAAAGGAGACAGTTAGTGCCTGGTCGTCTTCAGTCGCTCGGTCGTaGAGGGTGTTAAACCATTGCTGCTTCCCACACCAGGACGTTAGT | + |
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Preference number: 1 (lower is better) Translates to: EKETVSAWSSSVARS*RVLNHCCFPHQDVS Trigger: ACTAACGTCCTGGTGTGGGAAGCAGCAATGGTTTAACACCCTGCACGACCGAGCGACTGAAGACGACCAGGCACTAACTGTCTCCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040532.12 |
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| 3UTR CCA 90 bp | GGGGCTGGCGGGTCCTGTCCAAGCAGAGACGTCTGTTTCTCACTATaGAATGTCTACCAGGATATGACTCCAGTGCTTGTGGTAACCATC | + |
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Preference number: 1 (lower is better) Translates to: GAGGSCPSRDVCFSL*NVYQDMTPVLVVTI Trigger: GATGGTTACCACAAGCACTGGAGTCATATCCTGGTAGACATTCCATAGTGAGAAACAGACGTCTCTGCTTGGACAGGACCCGCCAGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040532.12 |
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| 3UTR CCA 90 bp | GATGCCCTTAACAATGCTTACAGCCAGACCTTGATAACCACTGCTTaGGAGAAAGGGCAGGTTACCCAATTGGGTCACAGGGCAGGTCGT | + |
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Preference number: 1 (lower is better) Translates to: DALNNAYSQTLITTA*EKGQVTQLGHRAGR Trigger: ACGACCTGCCCTGTGACCCAATTGGGTAACCTGCCCTTTCTCCCAAGCAGTGGTTATCAAGGTCTGGCTGTAAGCATTGTTAAGGGCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR TCA 90 bp | CAGGTTAGAAAGCACTGTTGGGACATATGTGCAGCCTTCAAAGGCTaGGGGCAGGAGAAGAAACACTACAGCTTTAGATCCACTCGAGGC | + |
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Preference number: 1 (lower is better) Translates to: QVRKHCWDICAAFKG*GQEKKHYSFRSTRG Trigger: GCCTCGAGTGGATCTAAAGCTGTAGTGTTTCTTCTCCTGCCCTCAGCCTTTGAAGGCTGCACATATGTCCCAACAGTGCTTTCTAACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 90 bp | AGAGGTGACAAAAATATTCTCGTTTGTCATTCTCCTCCTTTCCCTTaGAAGAAACCAAGACCTCAGATTAAAGGCTCTTCTCCTCATAAG | + |
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Preference number: 1 (lower is better) Translates to: RGDKNILVCHSPPFP*KKPRPQIKGSSPHK Trigger: CTTATGAGGAGAAGAGCCTTTAATCTGAGGTCTTGGTTTCTTCCAAGGGAAAGGAGGAGAATGACAAACGAGAATATTTTTGTCACCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR GCA 90 bp | AACAGTATGAAGAAGCTCTCAAGTGACTGCTCTTGGTGGCGTGGACGGCCTAACCAGACAGCTGTGAGCTaGCGTGTGGTGGCTGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: NSMKKLSSDCSWWRGRPNQTAVS*RVVAGK Trigger: TTTCCCAGCCACCACACGGCAGCTCACAGCTGTCTG...GTTAGGCCGTCCACGCCACCAAGAGCAGTCACTTGAGAGCTTCTTCATACTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTTGCCTGCGTGTATGCCTCTGTGAGGGTGTTGGATACCCTGGAGTTACAGGCCAGCTGGAGGTTGTaGGGAAAATGCTCACTGTCC | + |
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Preference number: 2 (lower is better) Translates to: SFACVYASVRVLDTLELQASWRL*GKCSLS Trigger: GGACAGTGAGCATTTTCCTCACAACCTCCAGCTGGC...CTGTAACTCCAGGGTATCCAACACCCTCACAGAGGCATACACGCAGGCAAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR TCA 90 bp | AACAGTATGAAGAAGCTCTCAAGTGACTGCTCTTGGTGGCGTGGACGGCCTAACCTCAGCTCTGTACAGTaGCAGCCTAGACTGCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: NSMKKLSSDCSWWRGRPNLSSVQ*QPRLPK Trigger: CTTGGGCAGTCTAGGCTGTCACTGTACAGAGCTGAG...GTTAGGCCGTCCACGCCACCAAGAGCAGTCACTTGAGAGCTTCTTCATACTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGAAACGCCTGGGTCAGGCCAGGTGGTGGTGGCACATGGCTTTAATCTCAGCGGTAAGACTTCTGGGTaGCCACAGCAAAAGAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: TETPGSGQVVVAHGFNLSGKTSG*PQQKRN Trigger: ATTCCTCTTTTGCTGTGGCCACCCAGAAGTCTTACC...GCTGAGATTAAAGCCATGTGCCACCACCACCTGGCCTGACCCAGGCGTTTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR CCA 90 bp | CCCAAGGCCAAGTACTTCTCAAAGAAATCCAACTGTTACCAAGCACTGAAACGCGGCAGGTTACCCAATTaGGTCACAGGGCAGGTCGTG | + |
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Preference number: 2 (lower is better) Translates to: PKAKYFSKKSNCYQALKRGRLPN*VTGQVV Trigger: CACGACCTGCCCTGTGACCCAATTGGGTAACCTGCC...GCGTTTCAGTGCTTGGTAACAGTTGGATTTCTTTGAGAAGTACTTGGCCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR TCA 90 bp | CCCAAGGCCAAGTACTTCTCAAAGAAATCCAACTGTTACCAAGCACTGAAACGCAGTCTCAGCTATTTGTaGGGCAGACTGTGTGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: PKAKYFSKKSNCYQALKRSLSYL*GRLCEA Trigger: GGCCTCACACAGTCTGCCTCACAAATAGCTGAGACT...GCGTTTCAGTGCTTGGTAACAGTTGGATTTCTTTGAGAAGTACTTGGCCTTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCTTAACAATGCTTACAGCCAGACCTTGATAACCACTGCTTGGGAGAAAGGGAGGGAAGGGTTAGACTaGAAGAGAAGCTTGCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: ALNNAYSQTLITTAWEKGREGLD*KRSLLK Trigger: CTTCAGCAAGCTTCTCTTCCAGTCTAACCCTTCCCT...CCCTTTCTCCCAAGCAGTGGTTATCAAGGTCTGGCTGTAAGCATTGTTAAGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR CCA 90 bp | AATTTTCCTTCAGCTGGGCCAGAAACCACCACAGACGTTCTAGTCAGGGTTGCACATCCAAACTGCAGATaGAAAAGGAGACAGTTAGTG | + |
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Preference number: 2 (lower is better) Translates to: NFPSAGPETTTDVLVRVAHPNCR*KRRQLV Trigger: CACTAACTGTCTCCTTTTCCATCTGCAGTTTGGATG...TGCAACCCTGACTAGAACGTCTGTGGTGGTTTCTGGCCCAGCTGAAGGAAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGCCTTTACCTTGATAACAAAATATGTTCTGGTCCGGACAAATCCCCTGCAGCAATACCATCCAAACTaGAGATGGAAAAGGAGACAG | + |
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Preference number: 2 (lower is better) Translates to: SAFTLITKYVLVRTNPLQQYHPN*RWKRRQ Trigger: CTGTCTCCTTTTCCATCTGCAGTTTGGATGGTATTG...CTGCAGGGGATTTGTCCGGACCAGAACATATTTTGTTATCAAGGTAAAGGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGGCTCTGTCACTCACACCAGACAACCCCAAATAAATACCTTATGGAAAGACATCCAAACTGCAGATaGAAAAGGAGACAGTTAGTG | + |
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Preference number: 2 (lower is better) Translates to: VWLCHSHQTTPNKYLMERHPNCR*KRRQLV Trigger: CACTAACTGTCTCCTTTTCCATCTGCAGTTTGGATG...TCTTTCCATAAGGTATTTATTTGGGGTTGTCTGGTGTGAGTGACAGAGCCACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | GGAGTTACAGACAGCTGTGAGCTGCCGTGTGGTGGCTaGGAAATGAGCCTGGGTCCTCTGGAAGAGCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: GVTDSCELPCGG*EMSLGPLEEQP Trigger: TGGCTGCTCTTCCAGAGGACCCAGGCTCATTTCCCAGCCACCACACGGCAGCTCACAGCTGTCTGTAACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | TACCAAGCACTGAAACGCCTGGGTCAGGCCAGGTGGTaGTGGCACATGGCTTTAATCTCAGCCAGGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: YQALKRLGQARW*WHMALISAREA Trigger: TGCCTCCCTGGCTGAGATTAAAGCCATGTGCCACCACCACCTGGCCTGACCCAGGCGTTTCAGTGCTTGGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | CAAGCACTGAAACGCCTGGGTCAGGCCAGGTGGTGGTaGCACATGGCTTTAATCTCAGCCAGGGAGGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: QALKRLGQARWW*HMALISAREAK Trigger: TTTTGCCTCCCTGGCTGAGATTAAAGCCATGTGCCACCACCACCTGGCCTGACCCAGGCGTTTCAGTGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | TGTTACCAAGCACTGAAACGCCTGGGTCAGGCCAGGTaGTGGTGGCACATGGCTTTAATCTCAGCCAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: CYQALKRLGQAR*WWHMALISARE Trigger: CTCCCTGGCTGAGATTAAAGCCATGTGCCACCACCACCTGGCCTGACCCAGGCGTTTCAGTGCTTGGTAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR GCA 72 bp | ACAGTTAGTGCCTGGTCGTCTTCAGTCGCTCGGTCGTaGAGGGTGTTAAACCATTGCTGCTTCCCACACCAG | + |
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Preference number: 3 (lower is better) Translates to: TVSAWSSSVARS*RVLNHCCFPHQ Trigger: CTGGTGTGGGAAGCAGCAATGGTTTAACACCCTGCACGACCGAGCGACTGAAGACGACCAGGCACTAACTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | ACAAAATATGTTCTGGTCCGGACAAATCCCCTGCAGTaGTTCCTAGGAGGAGAGAGTCCAGGCGTCCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: TKYVLVRTNPLQ*FLGGESPGVQA Trigger: GGCCTGGACGCCTGGACTCTCTCCTCCTAGGAATCACTGCAGGGGATTTGTCCGGACCAGAACATATTTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | TCCAAACTGCAGATGGAAAAGGAGACAGTTAGTGCCTaGTCGTCTTCAGTCGCTCGGTCGTGCAGGGTGTTA | + |
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Preference number: 3 (lower is better) Translates to: SKLQMEKETVSA*SSSVARSCRVL Trigger: TAACACCCTGCACGACCGAGCGACTGAAGACGACCAGGCACTAACTGTCTCCTTTTCCATCTGCAGTTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | ATGCTCATTGGTCTTTTGCCTGCGTGTATGCCTCTGTaGGGGTGTTGGATACCCTGGAGTTACAGACAGCTG | + |
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Preference number: 3 (lower is better) Translates to: MLIGLLPACMPL*GCWIPWSYRQL Trigger: CAGCTGTCTGTAACTCCAGGGTATCCAACACCCTCACAGAGGCATACACGCAGGCAAAAGACCAATGAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | AGTACTTCTCAAAGAAATCCAACTGTTACCAAGCACTaGAACGCCTGGGTCAGGCCAGGTGGTGGTGGCACA | + |
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Preference number: 3 (lower is better) Translates to: STSQRNPTVTKH*NAWVRPGGGGT Trigger: TGTGCCACCACCACCTGGCCTGACCCAGGCGTTTCAGTGCTTGGTAACAGTTGGATTTCTTTGAGAAGTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | AAGGTGAAGTCTCAGCTATTTGTGAGGCAGACTGTGTaGGGCCATCAGCAGGTTAGAAAGCACTGTTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: KVKSQLFVRQTV*GHQQVRKHCWD Trigger: GTCCCAACAGTGCTTTCTAACCTGCTGATGGCCTCACACAGTCTGCCTCACAAATAGCTGAGACTTCACCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | GGGTCCTGTCCAAGCAGAGACGTCTGTTTCTCACTATaGAATGTCTACCAGGATATGACTCCAGTGCTTGTG | + |
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Preference number: 3 (lower is better) Translates to: GSCPSRDVCFSL*NVYQDMTPVLV Trigger: CACAAGCACTGGAGTCATATCCTGGTAGACATTCCATAGTGAGAAACAGACGTCTCTGCTTGGACAGGACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040532.12 |
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| 3UTR CCA 72 bp | AACAATGCTTACAGCCAGACCTTGATAACCACTGCTTaGGAGAAAGGGCAGGTTACCCAATTGGGTCACAGG | + |
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Preference number: 3 (lower is better) Translates to: NNAYSQTLITTA*EKGQVTQLGHR Trigger: CCTGTGACCCAATTGGGTAACCTGCCCTTTCTCCCAAGCAGTGGTTATCAAGGTCTGGCTGTAAGCATTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | AAGCACTGTTGGGACATATGTGCAGCCTTCAAAGGCTaGGGGCAGGAGAAGAAACACTACAGCTTTAGATCC | + |
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Preference number: 3 (lower is better) Translates to: KHCWDICAAFKG*GQEKKHYSFRS Trigger: GGATCTAAAGCTGTAGTGTTTCTTCTCCTGCCCTCAGCCTTTGAAGGCTGCACATATGTCCCAACAGTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR GCA 72 bp | CTTCTTTTATGCTCATTGGTCTTTTGCCTGCGTGTATaGCTCTGTGAGGGTGTTGGATACCCTGGAGTTACA | + |
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Preference number: 3 (lower is better) Translates to: LLLCSLVFCLRV*LCEGVGYPGVT Trigger: TGTAACTCCAGGGTATCCAACACCCTCACAGAGGCATACACGCAGGCAAAAGACCAATGAGCATAAAAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | TTTCCGTATTCTAGCCATAAAGCCAGCTGGAGGTTGTaGGGAAAATGCTCACTGTCCCAAGGACTACAGAAA | + |
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Preference number: 3 (lower is better) Translates to: FPYSSHKASWRL*GKCSLSQGLQK Trigger: TTTCTGTAGTCCTTGGGACAGTGAGCATTTTCCTCACAACCTCCAGCTGGCTTTATGGCTAGAATACGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | GGCGACTCTGGAGAACCCCTGTACATTGTTAGAACATaGGTTCTTAGGCATGGGATAGTGTTTAGGTACATG | + |
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Preference number: 3 (lower is better) Translates to: GDSGEPLYIVRT*VLRHGIVFRYM Trigger: CATGTACCTAAACACTATCCCATGCCTAAGAACTCATGTTCTAACAATGTACAGGGGTTCTCCAGAGTCGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR GCA 72 bp | GATTTACTCTTCTTTTATGCTCATTGGTCTTTTGCCTaGGTGTATGCCTCTGTGAGGGTGTTGGATACCCTG | + |
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Preference number: 3 (lower is better) Translates to: DLLFFYAHWSFA*VYASVRVLDTL Trigger: CAGGGTATCCAACACCCTCACAGAGGCATACACGCAGGCAAAAGACCAATGAGCATAAAAGAAGAGTAAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | GGACTACAGAAAAGGGCCAGTAAAGTAACTACAGTGTaGCTCTGTCACTCACACCAGACAACCCCAAATAAA | + |
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Preference number: 3 (lower is better) Translates to: GLQKRASKVTTV*LCHSHQTTPNK Trigger: TTTATTTGGGGTTGTCTGGTGTGAGTGACAGAGCCACACTGTAGTTACTTTACTGGCCCTTTTCTGTAGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| 3UTR TCA 72 bp | CCAGGCCTGTTTGATGCAGTCTGTATTCACTGCTTTTaGACTTCTGACTGGTTAAACACATTTCAAAATCTC | + |
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Preference number: 3 (lower is better) Translates to: PGLFDAVCIHCF*TSDWLNTFQNL Trigger: GAGATTTTGAAATGTGTTTAACCAGTCAGAAGTTCAAAAGCAGTGAATACAGACTGCATCAAACAGGCCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | AAAAATATTCTCGTTTGTCATTCTCCTCCTTTCCCTTaGAAGAAACCAAGACCTCAGATTAAAGGCTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: KNILVCHSPPFP*KKPRPQIKGSS Trigger: AGAAGAGCCTTTAATCTGAGGTCTTGGTTTCTTCCAAGGGAAAGGAGGAGAATGACAAACGAGAATATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR-3UTR CAA 90 bp | ATCACTGAAGACAAACTGTCATTTAGAATGACAGACTTCCACAAGTCCTTTAGACAAAAATATTCTCGTTaGTCATTCTCCTCCTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: ITEDKLSFRMTDFHKSFRQKYSR*SFSSFP Trigger: GGGAAAGGAGGAGAATGACAAACGAGAATATTTTTG...TCTAAAGGACTTGTGGAAGTCTGTCATTCTAAATGACAGTTTGTCTTCAGTGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CCA 72 bp | ATTAGTAATTCCATAAACAGTATCACAAACGCTAAGTaGAAGCATGGGACAATTCCCAGTACTCATAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: ISNSINSITNAK*KHGTIPSTHRV Trigger: TACTCTATGAGTACTGGGAATTGTCCCATGCTTCCACTTAGCGTTTGTGATACTGTTTATGGAATTACTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CAA 72 bp | GGAGAGAGTCCAGGCGTCCAGGCCGCCCAGGCCTGTTaGATGCAGTCTGTATTCACTGCTTTTGAACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GESPGVQAAQAC*MQSVFTAFELL Trigger: CAGAAGTTCAAAAGCAGTGAATACAGACTGCATCAAACAGGCCTGGGCGGCCTGGACGCCTGGACTCTCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| CDS-3UTR TCA 90 bp | TGCAGAAATCTCAATTTTCCTTCAGCTGGGCCAGAAACCACCACAGACGTTCTAGGGTCCTGTCCACTGTaGGGACTGGAGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: CRNLNFPSAGPETTTDVLGSCPL*GLEGFP Trigger: TGGAAAGCCCTCCAGTCCTCACAGTGGACAGGACCC...TAGAACGTCTGTGGTGGTTTCTGGCCCAGCTGAAGGAAAATTGAGATTTCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| CDS-3UTR TCA 90 bp | AATGCAGAAATCTCAATTTTCCTTCAGCTGGGCCAGAAACCACCACAGACGTTCGGGTCCTGTCCACTGTaGGGACTGGAGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: NAEISIFLQLGQKPPQTFGSCPL*GLEGFP Trigger: TGGAAAGCCCTCCAGTCCTCACAGTGGACAGGACCC...GAACGTCTGTGGTGGTTTCTGGCCCAGCTGAAGGAAAATTGAGATTTCTGCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| CDS-3UTR CCA 90 bp | TCACTATGGAATGTCTACCAGGATATGACTCCAGTGCTTGTGGTAACCATCCTCGAGCACTGTGAGGACTaGAGGGCTTTCCAGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: SLWNVYQDMTPVLVVTILEHCED*RAFQGG Trigger: GCCTCCCTGGAAAGCCCTCCAGTCCTCACAGTGCTC...GAGGATGGTTACCACAAGCACTGGAGTCATATCCTGGTAGACATTCCATAGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040532.12 |
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| 3UTR CAA 72 bp | CAAAGAGATGCCCTTAACAATGCTTACAGCCAGACCTaGATAACCACTGCTTGGGAGAAAGGGCAGGTTACC | + |
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Preference number: 4 (lower is better) Translates to: QRDALNNAYSQT*ITTAWEKGQVT Trigger: GGTAACCTGCCCTTTCTCCCAAGCAGTGGTTATCAAGGTCTGGCTGTAAGCATTGTTAAGGGCATCTCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| CDS-3UTR GCA 90 bp | AAGCTTAGGCCAACCAACAAAGCCCTCAACTTTTCAATAGAATCATTTACTCAGGGCACTCTGTGTCGGTaGAGTAGGACTGGGACTGCC | + |
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Preference number: 4 (lower is better) Translates to: KLRPTNKALNFSIESFTQGTLCR*SRTGTA Trigger: GGCAGTCCCAGTCCTACTGCACCGACACAGAGTGCC...CTGAGTAAATGATTCTATTGAAAAGTTGAGGGCTTTGTTGGTTGGCCTAAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| CDS-3UTR GCA 90 bp | AAAATACTTAAATGCAGAAATCTCAATTTTCCTTCAGCTGGGCCAGAAACCACCGGCACTCTGTGTCGGTaGAGTAGGACTGGGACTGCC | + |
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Preference number: 4 (lower is better) Translates to: KILKCRNLNFPSAGPETTGTLCR*SRTGTA Trigger: GGCAGTCCCAGTCCTACTGCACCGACACAGAGTGCC...GGTGGTTTCTGGCCCAGCTGAAGGAAAATTGAGATTTCTGCATTTAAGTATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| CDS-3UTR GCA 90 bp | ATCACTGAAGACAAACTGTCATTTAGAATGACAGACTTCCACAAGTCCTTTAGAGGCACTCTGTGTCGGTaGAGTAGGACTGGGACTGCC | + |
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Preference number: 4 (lower is better) Translates to: ITEDKLSFRMTDFHKSFRGTLCR*SRTGTA Trigger: GGCAGTCCCAGTCCTACTGCACCGACACAGAGTGCC...TCTAAAGGACTTGTGGAAGTCTGTCATTCTAAATGACAGTTTGTCTTCAGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| 3UTR CAA 72 bp | CAGCCTAGACTGCCCAAGAAGGGATCAGCCTTTACCTaGATAACAAAATATGTTCTGGTCCGGACAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: QPRLPKKGSAFT*ITKYVLVRTNP Trigger: GGGATTTGTCCGGACCAGAACATATTTTGTTATCAAGGTAAAGGCTGATCCCTTCTTGGGCAGTCTAGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139122.8 |
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| CDS-3UTR TCA 90 bp | AAGCTTAGGCCAACCAACAAAGCCCTCAACTTTTCAATAGAATCATTTACTCAGTACAGTGGAGCACTGTaGGGACTGGAGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KLRPTNKALNFSIESFTQYSGAL*GLEGFP Trigger: TGGAAAGCCCTCCAGTCCTCACAGTGCTCCACTGTA...CTGAGTAAATGATTCTATTGAAAAGTTGAGGGCTTTGTTGGTTGGCCTAAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040532.12 |
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| CDS CCA 90 bp | CATCAGGATCACAGTGATGCTGATGCCACTGTCACTGGAGGGTCCTaGCAACTCCCGAAGGCACTCTGTGTCGGTGCAGTAGGACTGGGA | + |
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Preference number: 5 (lower is better) Translates to: HQDHSDADATVTGGS*QLPKALCVGAVGLG Trigger: TCCCAGTCCTACTGCACCGACACAGAGTGCCTTCGGGAGTTGCCAGGACCCTCCAGTGACAGTGGCATCAGCATCACTGTGATCCTGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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| CDS CCA 72 bp | CACAGTGATGCTGATGCCACTGTCACTGGAGGGTCCTaGCAACTCCCGAAGGCACTCTGTGTCGGTGCAGTA | + |
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Preference number: 6 (lower is better) Translates to: HSDADATVTGGS*QLPKALCVGAV Trigger: TACTGCACCGACACAGAGTGCCTTCGGGAGTTGCCAGGACCCTCCAGTGACAGTGGCATCAGCATCACTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040532.12 ENSMUST00000121661.8 ENSMUST00000139122.8 |
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