RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091264

Ensembl transcript IDs: ENSMUST00000165561.4

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCGGCACAAGACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTaGCGAATGGTTATGCATAGAACTGGCGTGGAGCTTAATGCTAGG +
Preference number: 1 (lower is better)
Translates to: AAQDRKAPVNHSSSI*RMVMHRTGVELNAR
Trigger: CCTAGCATTAAGCTCCACGCCAGTTCTATGCATAACCATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTCTTGTGCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 90 bp ACACACAGTTCCAATTCCTCACAAAGGACCTGTCAAGCAGCAAGATaGTCATGCATCGCGGCACAAGACAGAAAGGCTCCTGTAAACCAC +
Preference number: 1 (lower is better)
Translates to: THSSNSSQRTCQAAR*SCIAAQDRKAPVNH
Trigger: GTGGTTTACAGGAGCCTTTCTGTCTTGTGCCGCGATGCATGATCATCTTGCTGCTTGACAGGTCCTTTGTGAGGAATTGGAACTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 90 bp CTAGAGCACTGGCCATGCAACATTTCCAGAAGGGCTGCTCGACACTaGCTTCTGTCTAATACCAGCAAACAGCTTTGGATAAAACCTTGG +
Preference number: 1 (lower is better)
Translates to: LEHWPCNISRRAARH*LLSNTSKQLWIKPW
Trigger: CCAAGGTTTTATCCAAAGCTGTTTGCTGGTATTAGACAGAAGGCAGTGTCGAGCAGCCCTTCTGGAAATGTTGCATGGCCAGTGCTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CCA 90 bp ACCACAGTAGCAGTATCTGGCGAATGGTTATGCATAGAACTGGCGTaGAGCTTAATGCTAGGAAGTCCTCAACAGGTAGCGTGTGTGCTA +
Preference number: 1 (lower is better)
Translates to: TTVAVSGEWLCIELA*SLMLGSPQQVACVL
Trigger: TAGCACACACGCTACCTGTTGAGGACTTCCTAGCATTAAGCTCCACGCCAGTTCTATGCATAACCATTCGCCAGATACTGCTACTGTGGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 90 bp CAACCAGTACTTTCTCAAGCCCTAGTACTCTTGAGGTCTTGTCGATaGATTGCTGTTCGTGAAGTACTTTCTCCACAACAGAAGCCCAGA +
Preference number: 1 (lower is better)
Translates to: QPVLSQALVLLRSCR*IAVREVLSPQQKPR
Trigger: TCTGGGCTTCTGTTGTGGAGAAAGTACTTCACGAACAGCAATTCATCGACAAGACCTCAAGAGTACTAGGGCTTGAGAAAGTACTGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 90 bp TCAAGCCCTAGTACTCTTGAGGTCTTGTCGATGAATTGCTGTTCGTaGAGTACTTTCTCCACAACAGAAGCCCAGAACATAAGTCCTCAT +
Preference number: 1 (lower is better)
Translates to: SSPSTLEVLSMNCCS*STFSTTEAQNISPH
Trigger: ATGAGGACTTATGTTCTGGGCTTCTGTTGTGGAGAAAGTACTTCACGAACAGCAATTCATCGACAAGACCTCAAGAGTACTAGGGCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 90 bp CACATACACACATACATCTTTAGGAAGGGTTGGCCAAGAAGGAACTaGAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGA +
Preference number: 1 (lower is better)
Translates to: HIHTYIFRKGWPRRN*SNLPRSPQESTILR
Trigger: TCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTCTTGGCCAACCCTTCCTAAAGATGTATGTGTGTATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 90 bp TTTTGTCAGATCAATTCTGAGGATTTTGGCAATTTCTCCTGCCTTTaGCTGCCATCACTTGGCGTGAAGAATGGCAATTGCTTTGCAAGT +
Preference number: 1 (lower is better)
Translates to: FCQINSEDFGNFSCL*LPSLGVKNGNCFAS
Trigger: ACTTGCAAAGCAATTGCCATTCTTCACGCCAAGTGATGGCAGTCAAAGGCAGGAGAAATTGCCAAAATCCTCAGAATTGATCTGACAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 90 bp TCCTTAATTCTATATTCTATAACCCAGTGCCATTCTACAGTCACCTaGGCATATCTCCATGCTCTGAGGACTGCTTATTGGCTTTATGAA +
Preference number: 1 (lower is better)
Translates to: SLILYSITQCHSTVT*AYLHALRTAYWLYE
Trigger: TTCATAAAGCCAATAAGCAGTCCTCAGAGCATGGAGATATGCTCAGGTGACTGTAGAATGGCACTGGGTTATAGAATATAGAATTAAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 90 bp CATGTGTGTCTACGAAGAAAGCATCGCCCATTAAGCTATGGCATGTaGCTGGTATCACAGAAACATGTTTTATTTTGCATTTATTCCATG +
Preference number: 1 (lower is better)
Translates to: HVCLRRKHRPLSYGM*LVSQKHVLFCIYSM
Trigger: CATGGAATAAATGCAAAATAAAACATGTTTCTGTGATACCAGGCACATGCCATAGCTTAATGGGCGATGCTTTCTTCGTAGACACACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 90 bp CTGTTATACAAATCTTTAATGCATTTGGCATTTAAATCTGAGCCATaGTATCACATGGGCAATTTGAAAACACATACACACGCATGCGCA +
Preference number: 1 (lower is better)
Translates to: LLYKSLMHLAFKSEP*YHMGNLKTHTHACA
Trigger: TGCGCATGCGTGTGTATGTGTTTTCAAATTGCCCATGTGATAGCATGGCTCAGATTTAAATGCCAAATGCATTAAAGATTTGTATAACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 90 bp TCTTCCTTTCTTAAGTCCTGTAAAGCATTTTGCTGTTTCTTTGCATaGAAATATAGACTTGTGATCATTTCTCCAGCCACAAATGTTGGC +
Preference number: 1 (lower is better)
Translates to: SSFLKSCKAFCCFFA*KYRLVIISPATNVG
Trigger: GCCAACATTTGTGGCTGGAGAAATGATCACAAGTCTATATTTTCATGCAAAGAAACAGCAAAATGCTTTACAGGACTTAAGAAAGGAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 90 bp AGTGTATTCAAGGGGCTGCGCTGTCTACATCTTCAGGAACTCACCTaGGGCAGTGCCAGTAGACGATTAACAACCAGCCTCTGCCAGAGC +
Preference number: 2 (lower is better)
Translates to: SVFKGLRCLHLQELT*GSASRRLTTSLCQS
Trigger: GCTCTGGCAGAGGCTGGTTGTTAATCGTCTACTGGCACTGCCCAAGGTGAGTTCCTGAAGATGTAGACAGCGCAGCCCCTTGAATACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp CTCAAGAATCTACAATCCTCAGAGATGATAGCATTATTTCTGGAAGGGTGCAGGGAAAGAAAGAAAGGATaGGTCCAGGAGCCAGCGAGT +
Preference number: 2 (lower is better)
Translates to: LKNLQSSEMIALFLEGCRERKKG*VQEPAS
Trigger: ACTCGCTGGCTCCTGGACTCATCCTTTCTTTCTTTC...CCTGCACCCTTCCAGAAATAATGCTATCATCTCTGAGGATTGTAGATTCTTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp GCGGCACAAGACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTGGCGAATGTTGTCAGATCAATTCTaGGGATTTTGGCAATTTCTC +
Preference number: 2 (lower is better)
Translates to: AAQDRKAPVNHSSSIWRMLSDQF*GFWQFL
Trigger: GAGAAATTGCCAAAATCCTCAGAATTGATCTGACAA...CATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTCTTGTGCCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGGCACATGAGGGACCCTaGAGAGAAAACACTTTCTCT +
Preference number: 2 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSEAHEGP*RENTFS
Trigger: AGAGAAAGTGTTTTCTCTGCAGGGTCCCTCATGTGC...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp CAACAGGTAGCGTGTGTGCTAACAAATGGAGATGCAGCTTCTACTGATACAGGAGCAAAATATCCAAGATaGAATCTGCAATGGCCCCAT +
Preference number: 2 (lower is better)
Translates to: QQVACVLTNGDAASTDTGAKYPR*NLQWPH
Trigger: ATGGGGCCATTGCAGATTTCATCTTGGATATTTTGC...TCCTGTATCAGTAGAAGCTGCATCTCCATTTGTTAGCACACACGCTACCTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CCA 90 bp GACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTGGCGAATGGTTATGCATACAAACATGGACTCCTaGCAAGAGGCATTTTACACA +
Preference number: 2 (lower is better)
Translates to: DRKAPVNHSSSIWRMVMHTNMDS*QEAFYT
Trigger: TGTGTAAAATGCCTCTTGCCAGGAGTCCATGTTTGT...ATGCATAACCATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp CAACAGGTAGCGTGTGTGCTAACAAATGGAGATGCAGCTTCTACTGATACAGGAATCACATGGGCAATTTaGAAACACATACACACGCAT +
Preference number: 2 (lower is better)
Translates to: QQVACVLTNGDAASTDTGITWAI*KHIHTH
Trigger: ATGCGTGTGTATGTGTTTTCAAATTGCCCATGTGAT...TCCTGTATCAGTAGAAGCTGCATCTCCATTTGTTAGCACACACGCTACCTGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp GACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTGGCGAATGGTTATGCATTTAAGCTATGGCATGTaGCTGGTATCACAGAAACAT +
Preference number: 2 (lower is better)
Translates to: DRKAPVNHSSSIWRMVMHLSYGM*LVSQKH
Trigger: ATGTTTCTGTGATACCAGGCACATGCCATAGCTTAA...ATGCATAACCATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp GACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTGGCGAATGGTTATGCATAATATACACATCAGCTaGGGTAATGACACTGTAACA +
Preference number: 2 (lower is better)
Translates to: DRKAPVNHSSSIWRMVMHNIHIS*GNDTVT
Trigger: TGTTACAGTGTCATTACCTCAGCTGATGTGTATATT...ATGCATAACCATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGAACCATCTATTAGGATaGACCATGTGTGTCTACGAA +
Preference number: 2 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSENHLLG*TMCVYE
Trigger: TTCGTAGACACACATGGTGCATCCTAATAGATGGTT...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGTTATTTCTGGAAGGGTaGAGGCAAGACTCTAGTATA +
Preference number: 2 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSELFLEG*RQDSSI
Trigger: TATACTAGAGTCTTGCCTGCACCCTTCCAGAAATAA...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp TTCATTTATTCTGTGCAGTTTAAAGAGGCAGTTAAAACATACAACCCATGGAAGTGTCAAGCAGCAAGATaGTCATGCATCGCGGCACAA +
Preference number: 2 (lower is better)
Translates to: FIYSVQFKEAVKTYNPWKCQAAR*SCIAAQ
Trigger: TTGTGCCGCGATGCATGATCATCTTGCTGCTTGACA...CTTCCATGGGTTGTATGTTTTAACTGCCTCTTTAAACTGCACAGAATAAATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGGGATATAAATCCAATTaGAAATGTTCCTCGGTCACT +
Preference number: 2 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSEGYKSN*KCSSVT
Trigger: AGTGACCGAGGAACATTTGCAATTGGATTTATATCC...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp AAAAAGATTGCACTGTGGACTCAGAATAGTATCACAGATTATGAGAAACACAGACTAGAGCACTGGCCATaGAACATTTCCAGAAGGGCT +
Preference number: 2 (lower is better)
Translates to: KKIALWTQNSITDYEKHRLEHWP*NISRRA
Trigger: AGCCCTTCTGGAAATGTTGCATGGCCAGTGCTCTAG...TCTGTGTTTCTCATAATCTGTGATACTATTCTGAGTCCACAGTGCAATCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp AAGCATCGCCCATTAAGCTATGGCATGTGCCTGGTATCACAGAAACATGTTTTATTGCAAGTGTCTCATTaGCAAAATATAGCATGGCTT +
Preference number: 2 (lower is better)
Translates to: KHRPLSYGMCLVSQKHVLLQVSH*QNIAWL
Trigger: AAGCCATGCTATATTTTGTCAATGAGACACTTGCAA...TAAAACATGTTTCTGTGATACCAGGCACATGCCATAGCTTAATGGGCGATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CCA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGTTAGTCTCCTCATACTaGCATCCAAAATGTTTTTAC +
Preference number: 2 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSELVSSY*HPKCFY
Trigger: GTAAAAACATTTTGGATGCCAGTATGAGGAGACTAA...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 90 bp CAGGAACACCATTCATTTGCATCTCTCTCGTCTGTATTTTACATCTaGTCATACACAGGTACTATTAACACACACAGTTCCAATTCCTCA +
Preference number: 2 (lower is better)
Translates to: QEHHSFASLSSVFYI*SYTGTINTHSSNSS
Trigger: TGAGGAATTGGAACTGTGTGTGTTAATAGTACCTGTGTATGACAAGATGTAAAATACAGACGAGAGAGATGCAAATGAATGGTGTTCCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CCA 90 bp AAGCATCGCCCATTAAGCTATGGCATGTGCCTGGTATCACAGAAACATGTTTTATGCAATGGCCCCATTTaGTTTAAATTCCCTTTATTT +
Preference number: 2 (lower is better)
Translates to: KHRPLSYGMCLVSQKHVLCNGPI*FKFPLF
Trigger: AAATAAAGGGAATTTAAACCAAATGGGGCCATTGCA...TAAAACATGTTTCTGTGATACCAGGCACATGCCATAGCTTAATGGGCGATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp TTGGCATCACTAATATCAAACATGTTCCAATGTTGTTTCCATGGTTTTCGACACATACTTCCCAATTTCTaGCGAGGCAAAATGTCAAGA +
Preference number: 2 (lower is better)
Translates to: LASLISNMFQCCFHGFRHILPNF*RGKMSR
Trigger: TCTTGACATTTTGCCTCGTCAGAAATTGGGAAGTAT...GTGTCGAAAACCATGGAAACAACATTGGAACATGTTTGATATTAGTGATGCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CCA 90 bp AAAAAGATTGCACTGTGGACTCAGAATAGTATCACAGATTATGAGAAACACAGAGACAAGACTATTACCTaGCTGACAGCAATGAGATAC +
Preference number: 2 (lower is better)
Translates to: KKIALWTQNSITDYEKHRDKTIT*LTAMRY
Trigger: GTATCTCATTGCTGTCAGCCAGGTAATAGTCTTGTC...TCTGTGTTTCTCATAATCTGTGATACTATTCTGAGTCCACAGTGCAATCTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp TTCATTTATTCTGTGCAGTTTAAAGAGGCAGTTAAAACATACAACCCATGGAAGAGCCTCTCTCTGCTTTaGATTTTGTCAGATCAATTC +
Preference number: 2 (lower is better)
Translates to: FIYSVQFKEAVKTYNPWKSLSLL*ILSDQF
Trigger: GAATTGATCTGACAAAATTCAAAGCAGAGAGAGGCT...CTTCCATGGGTTGTATGTTTTAACTGCCTCTTTAAACTGCACAGAATAAATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR GCA 90 bp TTCATTTATTCTGTGCAGTTTAAAGAGGCAGTTAAAACATACAACCCATGGAAGAACAGAGAGCTCACCTaGTGCTTAAAGTTTTTCCTA +
Preference number: 2 (lower is better)
Translates to: FIYSVQFKEAVKTYNPWKNRELT*CLKFFL
Trigger: TAGGAAAAACTTTAAGCAGCAGGTGAGCTCTCTGTT...CTTCCATGGGTTGTATGTTTTAACTGCCTCTTTAAACTGCACAGAATAAATGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR TCA 90 bp AAAAAGATTGCACTGTGGACTCAGAATAGTATCACAGATTATGAGAAACACAGATGCCTTGGGTCATCTTaGCCGGTTTTAAAATATTTA +
Preference number: 2 (lower is better)
Translates to: KKIALWTQNSITDYEKHRCLGSS*PVLKYL
Trigger: TAAATATTTTAAAACCGGTCAAGATGACCCAAGGCA...TCTGTGTTTCTCATAATCTGTGATACTATTCTGAGTCCACAGTGCAATCTTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp TCTGTACCTTCCCACCCACGTCTAGAGCACTGGCCATaGAACATTTCCAGAAGGGCTGCTCGACACTGCCTT +
Preference number: 3 (lower is better)
Translates to: SVPSHPRLEHWP*NISRRAARHCL
Trigger: AAGGCAGTGTCGAGCAGCCCTTCTGGAAATGTTGCATGGCCAGTGCTCTAGACGTGGGTGGGAAGGTACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp TCCAATTCCTCACAAAGGACCTGTCAAGCAGCAAGATaGTCATGCATCGCGGCACAAGACAGAAAGGCTCCT +
Preference number: 3 (lower is better)
Translates to: SNSSQRTCQAAR*SCIAAQDRKAP
Trigger: AGGAGCCTTTCTGTCTTGTGCCGCGATGCATGATCATCTTGCTGCTTGACAGGTCCTTTGTGAGGAATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CCA 72 bp GCAGTATCTGGCGAATGGTTATGCATAGAACTGGCGTaGAGCTTAATGCTAGGAAGTCCTCAACAGGTAGCG +
Preference number: 3 (lower is better)
Translates to: AVSGEWLCIELA*SLMLGSPQQVA
Trigger: CGCTACCTGTTGAGGACTTCCTAGCATTAAGCTCCACGCCAGTTCTATGCATAACCATTCGCCAGATACTGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CCA 72 bp GACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTaGCGAATGGTTATGCATAGAACTGGCGTGGAGCTT +
Preference number: 3 (lower is better)
Translates to: DRKAPVNHSSSI*RMVMHRTGVEL
Trigger: AAGCTCCACGCCAGTTCTATGCATAACCATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp CAACAGGTAGCGTGTGTGCTAACAAATGGAGATGCAGCTTCTACTGATACAGGACAATTTCTCCTGCCTTaGACTGCCATCACTTGGCGT +
Preference number: 3 (lower is better)
Translates to: QQVACVLTNGDAASTDTGQFLLP*TAITWR
Trigger: ACGCCAAGTGATGGCAGTCAAAGGCAGGAGAAATTG...TCCTGTATCAGTAGAAGCTGCATCTCCATTTGTTAGCACACACGCTACCTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGGGAAGGAGCTTGGCCTaGAAGCTCATTTCCCGTATG +
Preference number: 3 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSEGRSLA*KLISRM
Trigger: CATACGGGAAATGAGCTTCAAGGCCAAGCTCCTTCC...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp GCGGCACAAGACAGAAAGGCTCCTGTAAACCACAGTAGCAGTATCTGGCGAATGGAGCCTCTCTCTGCTTaGAATTTTGTCAGATCAATT +
Preference number: 3 (lower is better)
Translates to: AAQDRKAPVNHSSSIWRMEPLSA*NFVRSI
Trigger: AATTGATCTGACAAAATTCAAAGCAGAGAGAGGCTC...CATTCGCCAGATACTGCTACTGTGGTTTACAGGAGCCTTTCTGTCTTGTGCCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CCA 72 bp TTTTGGCAATTTCTCCTGCCTTTGACTGCCATCACTTaGCGTGAAGAATGGCAATTGCTTTGCAAGTGTCTC +
Preference number: 3 (lower is better)
Translates to: FWQFLLPLTAIT*REEWQLLCKCL
Trigger: GAGACACTTGCAAAGCAATTGCCATTCTTCACGCCAAGTGATGGCAGTCAAAGGCAGGAGAAATTGCCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp ATCAATTCTGAGGATTTTGGCAATTTCTCCTGCCTTTaGCTGCCATCACTTGGCGTGAAGAATGGCAATTGC +
Preference number: 3 (lower is better)
Translates to: INSEDFGNFSCL*LPSLGVKNGNC
Trigger: GCAATTGCCATTCTTCACGCCAAGTGATGGCAGTCAAAGGCAGGAGAAATTGCCAAAATCCTCAGAATTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CCA 72 bp CTCCTGCCTTTGACTGCCATCACTTGGCGTGAAGAATaGCAATTGCTTTGCAAGTGTCTCATTGACAAAATA +
Preference number: 3 (lower is better)
Translates to: LLPLTAITWREE*QLLCKCLIDKI
Trigger: TATTTTGTCAATGAGACACTTGCAAAGCAATTGCCATTCTTCACGCCAAGTGATGGCAGTCAAAGGCAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp AGTACTCTTGAGGTCTTGTCGATGAATTGCTGTTCGTaGAGTACTTTCTCCACAACAGAAGCCCAGAACATA +
Preference number: 3 (lower is better)
Translates to: STLEVLSMNCCS*STFSTTEAQNI
Trigger: TATGTTCTGGGCTTCTGTTGTGGAGAAAGTACTTCACGAACAGCAATTCATCGACAAGACCTCAAGAGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp GCCATTCTACAGTCACCTGAGCATATCTCCATGCTCTaGGGACTGCTTATTGGCTTTATGAAGTCAATTTCA +
Preference number: 3 (lower is better)
Translates to: AILQSPEHISML*GLLIGFMKSIS
Trigger: TGAAATTGACTTCATAAAGCCAATAAGCAGTCCTCAGAGCATGGAGATATGCTCAGGTGACTGTAGAATGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp ACATACATCTTTAGGAAGGGTTGGCCAAGAAGGAACTaGAGCAATCTACCAAGAAGTCCTCAAGAATCTACA +
Preference number: 3 (lower is better)
Translates to: TYIFRKGWPRRN*SNLPRSPQEST
Trigger: TGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTCTTGGCCAACCCTTCCTAAAGATGTATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp AAGCATCGCCCATTAAGCTATGGCATGTGCCTGGTATCACAGAAACATGTTTTACGTGAAGAATGGCAATaGCTTTGCAAGTGTCTCATT +
Preference number: 3 (lower is better)
Translates to: KHRPLSYGMCLVSQKHVLREEWQ*LCKCLI
Trigger: AATGAGACACTTGCAAAGCAATTGCCATTCTTCACG...TAAAACATGTTTCTGTGATACCAGGCACATGCCATAGCTTAATGGGCGATGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp AGTTCACTCTGTGATGCGGTCATAGGAGCCTCTCTCTaGTTTGAATTTTGTCAGATCAATTCTGAGGATTTT +
Preference number: 3 (lower is better)
Translates to: SSLCDAVIGASL*FEFCQINSEDF
Trigger: AAAATCCTCAGAATTGATCTGACAAAATTCAAAGCAGAGAGAGGCTCCTATGACCGCATCACAGAGTGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp TCAAATATAAAAGCACTTAGTTTACCAGCTGAGATCTaGAGTTATACTGGCTACCAGTCACAGTCAGACACC +
Preference number: 3 (lower is better)
Translates to: SNIKALSLPAEI*SYTGYQSQSDT
Trigger: GGTGTCTGACTGTGACTGGTAGCCAGTATAACTGCAGATCTCAGCTGGTAAACTAAGTGCTTTTATATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp GAAGGAACTGCAGCAATCTACCAAGAAGTCCTCAAGAATCTACAATCCTCAGAGAAACATGTTCCAATGTaGTTTCCATGGTTTTCGACA +
Preference number: 3 (lower is better)
Translates to: EGTAAIYQEVLKNLQSSEKHVPM*FPWFST
Trigger: TGTCGAAAACCATGGAAACAACATTGGAACATGTTT...CTCTGAGGATTGTAGATTCTTGAGGACTTCTTGGTAGATTGCTGCAGTTCCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp CTCAAGAATCTACAATCCTCAGAGATGATAGCATTATTTCTGGAAGGGTGCAGGTCAATTCTGAGGATTTaGGCAATTTCTCCTGCCTTT +
Preference number: 3 (lower is better)
Translates to: LKNLQSSEMIALFLEGCRSILRI*AISPAF
Trigger: AAAGGCAGGAGAAATTGCCAAAATCCTCAGAATTGA...CCTGCACCCTTCCAGAAATAATGCTATCATCTCTGAGGATTGTAGATTCTTGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp CTACGAAGAAAGCATCGCCCATTAAGCTATGGCATGTaGCTGGTATCACAGAAACATGTTTTATTTTGCATT +
Preference number: 3 (lower is better)
Translates to: LRRKHRPLSYGM*LVSQKHVLFCI
Trigger: AATGCAAAATAAAACATGTTTCTGTGATACCAGGCACATGCCATAGCTTAATGGGCGATGCTTTCTTCGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp ACTTTAAAGTTAAGTACACCCCTTGCACCGAGAGCCTaGGAATACAGGTATGACTGTTATAACAGCTATAAA +
Preference number: 3 (lower is better)
Translates to: TLKLSTPLAPRA*EYRYDCYNSYK
Trigger: TTTATAGCTGTTATAACAGTCATACCTGTATTCTCAGGCTCTCGGTGCAAGGGGTGTACTTAACTTTAAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp AGCGTGTGTGCTAACAAATGGAGATGCAGCTTCTACTaGTACAGGATAAAATGGAACTTGTTAGAAGTTTCA +
Preference number: 3 (lower is better)
Translates to: SVCANKWRCSFY*YRIKWNLLEVS
Trigger: TGAAACTTCTAACAAGTTCCATTTTATCCTGTATCAGTAGAAGCTGCATCTCCATTTGTTAGCACACACGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp CAATCCTCAGAGATGATAGCATTATTTCTGGAAGGGTaGAGGCAAGACTCTAGTATATGTATATTGTATCCT +
Preference number: 3 (lower is better)
Translates to: QSSEMIALFLEG*RQDSSICILYP
Trigger: AGGATACAATATACATATACTAGAGTCTTGCCTGCACCCTTCCAGAAATAATGCTATCATCTCTGAGGATTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp TCTACTTCCACTGTGAGAATCCATTCAGCTCAAACGTaGTTAATGCCTCAGCTGTTATACAAATCTTTAATG +
Preference number: 3 (lower is better)
Translates to: STSTVRIHSAQT*LMPQLLYKSLM
Trigger: CATTAAAGATTTGTATAACAGCTGAGGCATTAAGCACGTTTGAGCTGAATGGATTCTCACAGTGGAAGTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR GCA 72 bp TCACTTTTACTTAATCTAAATAACCATCTATTAGGATaGACCATGTGTGTCTACGAAGAAAGCATCGCCCAT +
Preference number: 3 (lower is better)
Translates to: SLLLNLNNHLLG*TMCVYEESIAH
Trigger: ATGGGCGATGCTTTCTTCGTAGACACACATGGTGCATCCTAATAGATGGTTATTTAGATTAAGTAAAAGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR-3UTR CAA 90 bp TTCATTTATTCTGTGCAGTTTAAAGAGGCAGTTAAAACATACAACCCATGGAAGGCTTTGGATAAAACCTaGGATGTCTTAATGGCAGTT +
Preference number: 3 (lower is better)
Translates to: FIYSVQFKEAVKTYNPWKALDKT*DVLMAV
Trigger: AACTGCCATTAAGACATCCAAGGTTTTATCCAAAGC...CTTCCATGGGTTGTATGTTTTAACTGCCTCTTTAAACTGCACAGAATAAATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR TCA 72 bp CCTGAAATATTTGATACCAACAATATACACATCAGCTaGGGTAATGACACTGTAACAAGCTGTGAAGTCATA +
Preference number: 3 (lower is better)
Translates to: PEIFDTNNIHIS*GNDTVTSCEVI
Trigger: TATGACTTCACAGCTTGTTACAGTGTCATTACCTCAGCTGATGTGTATATTGTTGGTATCAAATATTTCAGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 72 bp AAGGGGCTGCGCTGTCTACATCTTCAGGAACTCACCTaGGGCAGTGCCAGTAGACGATTAACAACCAGCCTC +
Preference number: 4 (lower is better)
Translates to: KGLRCLHLQELT*GSASRRLTTSL
Trigger: GAGGCTGGTTGTTAATCGTCTACTGGCACTGCCCAAGGTGAGTTCCTGAAGATGTAGACAGCGCAGCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
CDS-3UTR CCA 90 bp GGCAATTGCTTTGCAAGTGTCTCATTGACAAAATATAGCATGGCTTCGTCAACTGGACGATCAGCAGCGTaGCCACGAACACCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: GNCFASVSLTKYSMASSTGRSAA*PRTPAG
Trigger: CCCTGCTGGTGTTCGTGGCCACGCTGCTGATCGTCC...AGTTGACGAAGCCATGCTATATTTTGTCAATGAGACACTTGCAAAGCAATTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 72 bp GGCGTGAAGAATGGCAATTGCTTTGCAAGTGTCTCATaGACAAAATATAGCATGGCTTCGTCAACTTGTGGG +
Preference number: 4 (lower is better)
Translates to: GVKNGNCFASVS*TKYSMASSTCG
Trigger: CCCACAAGTTGACGAAGCCATGCTATATTTTGTCAATGAGACACTTGCAAAGCAATTGCCATTCTTCACGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
CDS-3UTR TCA 90 bp GGCAATTGCTTTGCAAGTGTCTCATTGACAAAATATAGCATGGCTTCGTCAACTTTCTGTTTCAGACCCTaGAGGCTGCTCATTATCTCC +
Preference number: 4 (lower is better)
Translates to: GNCFASVSLTKYSMASSTFCFRP*RLLIIS
Trigger: GGAGATAATGAGCAGCCTTCAGGGTCTGAAACAGAA...AGTTGACGAAGCCATGCTATATTTTGTCAATGAGACACTTGCAAAGCAATTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
CDS-3UTR GCA 90 bp CAAAATATCCAAGATGAAATCTGCAATGGCCCCATTTGGTTTAAATTCCCTTTATCAGACCCTGAAGGCTaGTCATTATCTCCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: QNIQDEICNGPIWFKFPLSDPEG*SLSPSW
Trigger: CCAGGAAGGAGATAATGAGCAGCCTTCAGGGTCTGA...TAAAGGGAATTTAAACCAAATGGGGCCATTGCAGATTTCATCTTGGATATTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 72 bp TCTGCTTTGAATTTTGTCAGATCAATTCTGAGGATTTaGGCAATTTCTCCTGCCTTTGACTGCCATCACTTG +
Preference number: 4 (lower is better)
Translates to: SALNFVRSILRI*AISPAFDCHHL
Trigger: CAAGTGATGGCAGTCAAAGGCAGGAGAAATTGCCAAAATCCTCAGAATTGATCTGACAAAATTCAAAGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 72 bp CCACGTATGAGCTATTACACCATAAGGTGTTATTTCTaGGGCCAAGCACAGTATTTATTACAGGTTTATAAG +
Preference number: 4 (lower is better)
Translates to: PRMSYYTIRCYF*GQAQYLLQVYK
Trigger: CTTATAAACCTGTAATAAATACTGTGCTTGGCCCAAGAAATAACACCTTATGGTGTAATAGCTCATACGTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
3UTR CAA 72 bp CATTCATTTGCATCTCTCTCGTCTGTATTTTACATCTaGTCATACACAGGTACTATTAACACACACAGTTCC +
Preference number: 4 (lower is better)
Translates to: HSFASLSSVFYI*SYTGTINTHSS
Trigger: GGAACTGTGTGTGTTAATAGTACCTGTGTATGACAAGATGTAAAATACAGACGAGAGAGATGCAAATGAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4
CDS CCA 72 bp AACCGCACACCATCAGCAACAGGACGATCAGCAGCGTaGCCACGAACACCAGCAGGGTCAGCCCCACGTTGT +
Preference number: 6 (lower is better)
Translates to: NRTPSATGRSAA*PRTPAGSAPRC
Trigger: ACAACGTGGGGCTGACCCTGCTGGTGTTCGTGGCCACGCTGCTGATCGTCCTGTTGCTGATGGTGTGCGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165561.4